Wall clock time and date at job start Tue Mar 31 2020 15:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46996 * 2 1 4 4 C 1.50698 * 109.46883 * 120.00231 * 2 1 3 5 5 H 1.08007 * 119.99939 * 120.00581 * 4 2 1 6 6 C 1.37878 * 120.00349 * 299.99703 * 4 2 1 7 7 N 1.31512 * 120.00003 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 119.99754 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46832 * 89.99972 * 8 6 4 10 10 H 1.48503 * 109.47015 * 209.99792 * 8 6 4 11 11 H 1.48503 * 109.47459 * 330.00003 * 8 6 4 12 12 N 1.46503 * 109.47017 * 240.00181 * 2 1 3 13 13 C 1.46495 * 119.99864 * 300.00179 * 12 2 1 14 14 C 1.34776 * 119.99820 * 119.99801 * 12 2 1 15 15 O 1.21289 * 119.99900 * 5.18957 * 14 12 2 16 16 C 1.50695 * 120.00018 * 185.18724 * 14 12 2 17 17 C 1.50696 * 109.60325 * 294.15662 * 16 14 12 18 18 C 1.38239 * 119.99883 * 126.93442 * 17 16 14 19 19 C 1.38240 * 119.99826 * 179.81250 * 18 17 16 20 20 C 1.38231 * 120.00056 * 0.42192 * 19 18 17 21 21 C 1.38234 * 119.99921 * 359.80888 * 20 19 18 22 22 C 1.38231 * 120.00236 * 307.21319 * 17 16 14 23 23 C 1.53349 * 109.60314 * 54.48386 * 16 14 12 24 24 C 1.53062 * 108.42578 * 52.22412 * 23 16 14 25 25 C 1.50179 * 109.88959 * 48.90315 * 24 23 16 26 26 O 1.21286 * 118.24563 * 162.39857 * 25 24 23 27 27 N 1.33353 * 123.51123 * 342.41346 * 25 24 23 28 28 C 1.45758 * 124.10377 * 2.22450 * 27 25 24 29 29 H 1.09000 * 109.46508 * 299.99561 * 1 2 3 30 30 H 1.08997 * 109.47193 * 59.99530 * 1 2 3 31 31 H 1.09001 * 109.46996 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00420 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47154 * 88.97451 * 13 12 2 34 34 H 1.08992 * 109.47454 * 328.97004 * 13 12 2 35 35 H 1.09002 * 109.47064 * 208.97103 * 13 12 2 36 36 H 1.07995 * 120.00074 * 0.02562 * 18 17 16 37 37 H 1.08002 * 119.99883 * 180.21114 * 19 18 17 38 38 H 1.07998 * 120.00229 * 179.79595 * 20 19 18 39 39 H 1.08001 * 119.99956 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.00193 * 359.97438 * 22 17 16 41 41 H 1.08994 * 109.67072 * 171.96163 * 23 16 14 42 42 H 1.08999 * 109.67111 * 292.48973 * 23 16 14 43 43 H 1.09005 * 109.40400 * 169.02710 * 24 23 16 44 44 H 1.08996 * 109.40467 * 288.86063 * 24 23 16 45 45 H 0.96997 * 117.94477 * 182.22531 * 27 25 24 46 46 H 1.08992 * 109.30009 * 220.61228 * 28 27 25 47 47 H 1.09003 * 109.29673 * 101.23460 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4828 7 7 2.1381 -0.8592 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8725 2.6998 10 1 0.9761 1.9949 3.9069 11 1 0.8471 2.1764 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.1639 1.0947 -1.8463 16 6 3.1989 -0.7074 -3.3698 17 6 4.0991 -1.8773 -3.0672 18 6 3.8003 -3.1285 -3.5735 19 6 4.6283 -4.2009 -3.2990 20 6 5.7502 -4.0241 -2.5111 21 6 6.0464 -2.7739 -2.0009 22 6 5.2206 -1.7007 -2.2785 23 6 1.9489 -1.1980 -4.1104 24 6 0.9717 -0.0270 -4.2387 25 6 1.6901 1.1829 -4.7635 26 8 1.0283 2.0866 -5.2286 27 7 3.0168 1.3166 -4.7459 28 6 3.9350 0.2935 -4.2614 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9035 -0.5282 4.4375 33 1 0.7280 -2.1444 -1.9837 34 1 1.5474 -2.6013 -0.4710 35 1 2.4545 -2.5771 -2.0022 36 1 2.9220 -3.2674 -4.1863 37 1 4.3967 -5.1777 -3.6974 38 1 6.3953 -4.8626 -2.2940 39 1 6.9227 -2.6358 -1.3849 40 1 5.4518 -0.7241 -1.8795 41 1 2.2265 -1.5547 -5.1022 42 1 1.4819 -2.0057 -3.5469 43 1 0.1698 -0.2980 -4.9254 44 1 0.5489 0.2007 -3.2602 45 1 3.3945 2.1468 -5.0762 46 1 4.7326 0.7671 -3.6891 47 1 4.3692 -0.2327 -5.1115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565182958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:49 Heat of formation + Delta-G solvation = -47.982312 kcal Electronic energy + Delta-G solvation = -30604.984067 eV Core-core repulsion = 26752.331626 eV Total energy + Delta-G solvation = -3852.652441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68013 -40.44755 -39.73373 -37.63885 -37.06408 -35.18106 -34.20561 -32.72877 -32.02068 -31.75339 -29.44901 -27.79934 -27.20228 -25.94643 -25.16145 -23.58801 -22.95887 -22.21956 -20.98977 -19.33383 -18.85534 -18.69522 -17.80948 -17.55056 -17.20687 -17.10796 -16.90465 -16.28765 -15.86988 -15.53762 -15.49387 -15.14493 -14.90923 -14.72256 -14.58486 -14.46384 -14.24460 -14.12327 -13.85325 -13.83081 -13.42776 -13.32337 -13.13797 -12.94586 -12.66210 -12.61192 -12.44341 -12.26967 -12.09273 -11.86071 -11.69699 -11.63297 -11.38054 -10.85736 -10.81425 -10.70760 -10.13067 -9.77016 -9.53318 -9.36031 -8.37756 -6.40879 0.38718 0.53921 1.21129 1.31150 1.38704 1.57043 1.68209 2.19823 2.23485 2.32159 2.84412 2.97918 3.29722 3.47830 3.51548 3.66568 3.78443 4.12761 4.13406 4.21372 4.32781 4.36631 4.41246 4.42843 4.53536 4.53697 4.54629 4.59459 4.68113 4.71248 4.75273 4.79903 4.88226 4.97062 4.99882 5.07563 5.13445 5.19068 5.28002 5.47377 5.60119 5.64067 5.68933 5.71098 5.74220 6.12892 6.17775 6.28543 6.61213 6.72166 7.14110 7.19076 7.34194 8.78202 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.005945 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.779361 B = 4708.670826 C = 6468.298945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.233 3.767 3 H 0.023 0.977 4 C -0.519 4.519 5 H 0.047 0.953 6 C 0.027 3.973 7 N -0.937 5.937 8 Si 0.935 3.065 9 H -0.253 1.253 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.583 5.583 13 C 0.060 3.940 14 C 0.513 3.487 15 O -0.592 6.592 16 C -0.043 4.043 17 C -0.078 4.078 18 C -0.108 4.108 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.139 4.139 25 C 0.515 3.485 26 O -0.611 6.611 27 N -0.703 5.703 28 C 0.139 3.861 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.268 0.732 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.143 0.857 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.133 0.867 44 H 0.081 0.919 45 H 0.402 0.598 46 H 0.072 0.928 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 -10.496 -19.814 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.130 3.870 3 H 0.041 0.959 4 C -0.557 4.557 5 H 0.065 0.935 6 C -0.172 4.172 7 N -0.576 5.576 8 Si 0.763 3.237 9 H -0.178 1.178 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.312 5.312 13 C -0.082 4.082 14 C 0.301 3.699 15 O -0.473 6.473 16 C -0.046 4.046 17 C -0.079 4.079 18 C -0.125 4.125 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.157 4.157 24 C -0.179 4.179 25 C 0.303 3.697 26 O -0.494 6.494 27 N -0.351 5.351 28 C 0.014 3.986 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.182 0.818 37 H 0.176 0.824 38 H 0.161 0.839 39 H 0.141 0.859 40 H 0.110 0.890 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.151 0.849 44 H 0.099 0.901 45 H 0.238 0.762 46 H 0.090 0.910 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.868 -9.701 -19.619 22.074 hybrid contribution 0.182 1.690 1.411 2.209 sum 3.051 -8.011 -18.208 20.125 Atomic orbital electron populations 1.22314 0.96693 1.02467 0.99670 1.18904 0.91615 0.93077 0.83443 0.95885 1.21316 1.31426 1.12958 0.90029 0.93489 1.25556 0.97102 0.99094 0.95489 1.69985 1.47094 1.42031 0.98530 0.86073 0.80208 0.80549 0.76847 1.17828 1.22385 1.19440 1.47729 1.49094 1.13007 1.21328 1.22421 1.02220 0.80718 1.02813 1.20845 0.77669 0.85759 0.85615 1.90651 1.56502 1.21436 1.78702 1.20023 0.97633 0.94868 0.92111 1.19140 0.94729 0.93944 1.00042 1.21442 1.00906 0.90492 0.99675 1.21540 0.93903 0.99992 0.97613 1.21521 0.98239 0.96795 0.97051 1.21286 0.99886 0.93420 1.00035 1.21019 0.95883 0.99012 0.98631 1.22272 0.91870 0.98054 1.03491 1.21742 1.00106 0.92484 1.03542 1.20624 0.82606 0.89310 0.77141 1.90704 1.65509 1.43678 1.49530 1.45296 1.06013 1.20677 1.63150 1.21347 0.91033 0.88482 0.97705 0.94308 0.92835 0.90636 0.92311 0.89866 0.92332 0.88331 0.81787 0.82408 0.83910 0.85900 0.89038 0.85618 0.86475 0.84934 0.90114 0.76235 0.90952 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.32 8.67 71.98 0.62 -5.70 16 2 C 0.23 11.13 2.22 44.25 0.10 11.22 16 3 H 0.02 1.28 5.97 -2.39 -0.01 1.27 16 4 C -0.52 -28.94 8.58 25.60 0.22 -28.72 16 5 H 0.05 2.86 7.56 -2.91 -0.02 2.84 16 6 C 0.03 1.53 5.45 84.66 0.46 1.99 16 7 N -0.94 -57.36 13.96 21.45 0.30 -57.06 16 8 Si 0.94 45.87 24.37 68.60 1.67 47.54 16 9 H -0.25 -11.36 6.87 99.48 0.68 -10.68 16 10 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 11 H -0.27 -13.31 6.53 99.48 0.65 -12.66 16 12 N -0.58 -22.30 2.64 -826.80 -2.18 -24.48 16 13 C 0.06 1.73 7.65 127.77 0.98 2.70 16 14 C 0.51 18.83 4.05 87.66 0.36 19.18 16 15 O -0.59 -27.40 14.93 -3.06 -0.05 -27.45 16 16 C -0.04 -1.03 0.35 -53.59 -0.02 -1.05 16 17 C -0.08 -1.69 3.13 -19.87 -0.06 -1.75 16 18 C -0.11 -1.57 7.35 22.27 0.16 -1.40 16 19 C -0.11 -1.54 10.05 22.27 0.22 -1.31 16 20 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 21 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 22 C -0.13 -3.41 9.02 22.27 0.20 -3.21 16 23 C -0.12 -2.00 3.17 30.73 0.10 -1.91 16 24 C -0.14 -3.22 5.50 29.71 0.16 -3.06 16 25 C 0.51 15.56 7.44 87.71 0.65 16.21 16 26 O -0.61 -23.51 17.78 -3.05 -0.05 -23.56 16 27 N -0.70 -18.34 5.11 -467.31 -2.39 -20.73 16 28 C 0.14 3.10 5.23 86.49 0.45 3.55 16 29 H 0.04 1.68 3.27 -2.39 -0.01 1.67 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 2.79 7.67 -2.39 -0.02 2.77 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.08 1.79 6.95 -2.39 -0.02 1.77 16 34 H 0.06 2.02 7.00 -2.39 -0.02 2.00 16 35 H 0.10 2.33 2.97 -2.39 -0.01 2.33 16 36 H 0.16 1.24 5.98 -2.91 -0.02 1.22 16 37 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.09 2.97 7.86 -2.91 -0.02 2.95 16 41 H 0.13 1.16 7.68 -2.39 -0.02 1.14 16 42 H 0.12 1.58 3.94 -2.39 -0.01 1.57 16 43 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 44 H 0.08 2.30 7.34 -2.39 -0.02 2.28 16 45 H 0.40 9.99 8.80 -92.71 -0.82 9.18 16 46 H 0.07 1.87 7.71 -2.39 -0.02 1.86 16 47 H 0.11 1.68 8.11 -2.39 -0.02 1.66 16 Total: -1.00 -82.24 354.87 2.47 -79.76 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.12 Total: 23.76 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 5.06 Total: 2.23 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -4.27 Total: -102.27 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -0.10 Total: -51.02 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.67 Total: 47.54 kcal Total: -82.24 2.47 -79.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565182958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.781 kcal (2) G-P(sol) polarization free energy of solvation -82.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds