Wall clock time and date at job start Tue Mar 31 2020 17:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47269 * 2 1 4 4 C 1.46503 * 120.00093 * 80.29289 * 3 2 1 5 5 C 1.50704 * 109.46994 * 89.99559 * 4 3 2 6 6 H 1.07991 * 120.00289 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99561 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00057 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47184 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47195 * 120.00235 * 9 7 5 12 12 H 1.48500 * 109.47421 * 240.00378 * 9 7 5 13 13 C 1.34769 * 120.00079 * 260.28818 * 3 2 1 14 14 O 1.21283 * 120.00327 * 181.54459 * 13 3 2 15 15 C 1.50702 * 119.99923 * 1.54888 * 13 3 2 16 16 C 1.50698 * 109.60649 * 51.88287 * 15 13 3 17 17 C 1.38239 * 119.99890 * 242.78353 * 16 15 13 18 18 C 1.38234 * 119.99734 * 179.76005 * 17 16 15 19 19 C 1.38237 * 120.00157 * 0.50650 * 18 17 16 20 20 C 1.38238 * 119.99965 * 359.74532 * 19 18 17 21 21 C 1.38238 * 120.00068 * 359.97438 * 20 19 18 22 22 C 1.53344 * 109.60252 * 291.55718 * 15 13 3 23 23 C 1.53075 * 108.42687 * 307.77427 * 22 15 13 24 24 C 1.50181 * 109.88901 * 311.10041 * 23 22 15 25 25 O 1.21280 * 118.24462 * 197.55637 * 24 23 22 26 26 N 1.33352 * 123.50685 * 17.58032 * 24 23 22 27 27 C 1.45751 * 124.10998 * 357.78001 * 26 24 23 28 28 H 1.08999 * 109.47325 * 292.31093 * 1 2 3 29 29 H 1.09002 * 109.47524 * 172.30896 * 1 2 3 30 30 H 1.09004 * 109.47089 * 52.30484 * 1 2 3 31 31 H 1.09005 * 109.46763 * 120.00015 * 2 1 3 32 32 H 1.08999 * 109.47217 * 239.99425 * 2 1 3 33 33 H 1.08994 * 109.47445 * 209.99875 * 4 3 2 34 34 H 1.09003 * 109.47058 * 329.99755 * 4 3 2 35 35 H 0.97005 * 119.99480 * 179.97438 * 8 7 5 36 36 H 1.07997 * 119.99959 * 359.97438 * 17 16 15 37 37 H 1.07998 * 120.00098 * 180.22742 * 18 17 16 38 38 H 1.08003 * 120.00290 * 179.72179 * 19 18 17 39 39 H 1.07997 * 120.00363 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.00461 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.67576 * 67.50829 * 22 15 13 42 42 H 1.09005 * 109.67878 * 188.04313 * 22 15 13 43 43 H 1.08997 * 109.40053 * 71.22821 * 23 22 15 44 44 H 1.09000 * 109.39994 * 191.05590 * 23 22 15 45 45 H 0.97002 * 117.94288 * 177.77740 * 26 24 23 46 46 H 1.09001 * 109.29719 * 258.76338 * 27 26 24 47 47 H 1.09001 * 109.30142 * 139.38806 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0609 2.1431 1.2506 5 6 3.3958 1.9374 1.9190 6 1 4.1384 1.3030 1.4582 7 6 3.6694 2.5601 3.1183 8 7 2.7652 3.3331 3.6792 9 14 5.3243 2.3058 3.9466 10 1 6.1584 1.3987 3.1179 11 1 6.0113 3.6143 4.0921 12 1 5.1191 1.7026 5.2879 13 6 2.4286 1.9509 -1.1504 14 8 2.8592 3.0847 -1.1459 15 6 2.3523 1.1791 -2.4425 16 6 0.9619 0.6256 -2.6196 17 6 0.7625 -0.7416 -2.6632 18 6 -0.5135 -1.2493 -2.8207 19 6 -1.5890 -0.3897 -2.9451 20 6 -1.3890 0.9776 -2.9067 21 6 -0.1136 1.4853 -2.7434 22 6 3.3646 0.0276 -2.4145 23 6 4.7369 0.5986 -2.0486 24 6 5.0353 1.7981 -2.9017 25 8 6.1853 2.1754 -2.9794 26 7 4.1033 2.4706 -3.5779 27 6 2.6934 2.1026 -3.6127 28 1 -0.3634 0.3901 0.9507 29 1 -0.3634 -1.0184 -0.1375 30 1 -0.3633 0.6284 -0.8132 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.9216 3.2025 1.0355 34 1 1.2662 1.7993 1.9127 35 1 2.9576 3.7709 4.5233 36 1 1.6033 -1.4131 -2.5708 37 1 -0.6697 -2.3175 -2.8511 38 1 -2.5854 -0.7863 -3.0726 39 1 -2.2291 1.6492 -3.0042 40 1 0.0427 2.5534 -2.7138 41 1 3.0628 -0.7083 -1.6693 42 1 3.4130 -0.4426 -3.3968 43 1 4.7390 0.8915 -0.9987 44 1 5.5010 -0.1609 -2.2141 45 1 4.3811 3.2540 -4.0780 46 1 2.4778 1.5905 -4.5504 47 1 2.0840 3.0042 -3.5496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579022994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:14 Heat of formation + Delta-G solvation = -21.989894 kcal Electronic energy + Delta-G solvation = -30809.663297 eV Core-core repulsion = 26958.137973 eV Total energy + Delta-G solvation = -3851.525325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.61818 -39.36570 -38.34249 -36.08553 -35.37985 -33.45169 -32.58505 -31.76023 -31.02710 -29.94703 -28.44128 -27.19685 -24.99791 -24.21533 -23.03215 -22.61338 -22.07229 -21.29748 -19.82328 -17.84076 -17.75092 -16.54892 -16.49798 -16.16191 -15.94937 -15.59991 -15.50402 -14.70561 -14.64830 -14.51103 -14.25568 -13.86383 -13.68278 -13.61292 -13.36808 -13.26466 -13.06014 -12.45007 -12.27393 -12.15816 -12.01978 -11.81345 -11.56194 -11.41140 -11.25449 -11.14790 -11.02391 -10.82785 -10.75561 -10.58830 -10.42097 -10.11000 -9.61948 -9.47054 -9.25272 -8.89920 -8.87361 -8.48442 -8.43855 -7.67397 -6.05091 -4.09671 1.21153 1.30660 2.96396 3.21893 3.30504 3.39104 3.42994 3.53694 3.64954 3.79833 4.34126 4.45092 4.54160 4.59904 4.79261 4.88725 4.91053 4.95614 5.02566 5.18038 5.26993 5.30148 5.36511 5.39320 5.45276 5.57337 5.61715 5.70733 5.78153 5.81204 5.84605 5.91048 5.93944 6.09946 6.17394 6.31416 6.35918 6.42297 6.46404 6.62244 6.86737 6.97873 7.05704 7.41625 7.51638 7.55718 7.90961 8.21693 8.37710 8.48643 8.86554 9.02737 9.55801 11.02933 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.005637 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.021346 B = 4965.836114 C = 6508.256338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 N -0.584 5.584 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.517 3.483 14 O -0.529 6.529 15 C -0.059 4.059 16 C -0.061 4.061 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.106 4.106 22 C -0.120 4.120 23 C -0.142 4.142 24 C 0.531 3.469 25 O -0.564 6.564 26 N -0.706 5.706 27 C 0.144 3.856 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.399 0.601 46 H 0.070 0.930 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.484 -11.159 -16.053 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.035 4.035 3 N -0.315 5.315 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.302 3.698 14 O -0.406 6.406 15 C -0.063 4.063 16 C -0.062 4.062 17 C -0.129 4.129 18 C -0.133 4.133 19 C -0.138 4.138 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.157 4.157 23 C -0.182 4.182 24 C 0.319 3.681 25 O -0.443 6.443 26 N -0.357 5.357 27 C 0.019 3.981 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.235 0.765 46 H 0.088 0.912 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.763 -10.438 -15.753 20.830 hybrid contribution 0.705 0.217 0.663 0.992 sum -8.058 -10.221 -15.090 19.928 Atomic orbital electron populations 1.22535 0.96516 1.01649 1.03084 1.21969 0.94333 0.84383 1.02864 1.48138 1.61063 1.13285 1.08966 1.19260 0.97062 0.92196 0.78588 1.21419 1.00200 1.29213 1.05422 0.92508 1.24914 0.97074 0.94890 0.97108 1.69943 1.34060 1.30860 1.18471 0.86486 0.83962 0.78178 0.79106 1.19692 1.20864 1.20980 1.19739 0.79032 0.86851 0.84201 1.90723 1.45539 1.18453 1.85898 1.20178 0.93544 0.96870 0.95725 1.19321 0.92948 0.93730 1.00196 1.21114 0.97623 0.94325 0.99879 1.21063 0.92476 0.99654 1.00103 1.21127 0.98853 0.93493 1.00306 1.21086 0.96716 0.95497 0.99967 1.20982 0.92330 0.99892 0.99226 1.22071 0.93277 0.96870 1.03493 1.21720 0.98035 0.96303 1.02157 1.19944 0.84669 0.84676 0.78852 1.90721 1.20458 1.68988 1.64163 1.45128 1.07755 1.31381 1.51395 1.21095 0.82372 0.98816 0.95853 0.92801 0.92573 0.91107 0.90782 0.89877 0.94104 0.95017 0.92802 0.85351 0.86012 0.86272 0.86053 0.85990 0.88677 0.89938 0.87051 0.87887 0.76547 0.91157 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 8.12 37.16 0.30 -2.19 16 2 C 0.09 1.36 5.30 -4.04 -0.02 1.34 16 3 N -0.58 -11.62 2.46 -175.06 -0.43 -12.05 16 4 C 0.25 6.33 5.15 -5.19 -0.03 6.30 16 5 C -0.52 -14.63 9.39 -34.44 -0.32 -14.96 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.52 9.87 4.55 -10.99 -0.05 9.82 16 14 O -0.53 -12.52 14.75 5.55 0.08 -12.44 16 15 C -0.06 -0.80 0.35 -156.68 -0.05 -0.85 16 16 C -0.06 -0.69 2.49 -104.62 -0.26 -0.95 16 17 C -0.11 -1.03 6.16 -39.58 -0.24 -1.27 16 18 C -0.11 -0.94 8.86 -39.58 -0.35 -1.29 16 19 C -0.12 -1.00 9.73 -39.58 -0.39 -1.39 16 20 C -0.11 -1.09 9.18 -39.58 -0.36 -1.45 16 21 C -0.11 -1.20 7.40 -39.58 -0.29 -1.49 16 22 C -0.12 -1.42 3.43 -26.51 -0.09 -1.51 16 23 C -0.14 -2.19 5.50 -28.10 -0.15 -2.34 16 24 C 0.53 9.41 7.17 -11.87 -0.09 9.32 16 25 O -0.56 -12.14 17.78 5.56 0.10 -12.04 16 26 N -0.71 -10.47 4.87 -61.39 -0.30 -10.77 16 27 C 0.14 1.79 5.07 -4.49 -0.02 1.77 16 28 H 0.05 0.84 7.99 -51.93 -0.41 0.43 16 29 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 30 H 0.07 0.96 3.14 -51.93 -0.16 0.80 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.08 1.05 1.62 -51.93 -0.08 0.96 16 33 H 0.04 1.19 7.44 -51.93 -0.39 0.80 16 34 H 0.03 0.83 7.92 -51.93 -0.41 0.42 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.13 0.99 5.71 -52.49 -0.30 0.69 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.12 1.46 7.58 -52.49 -0.40 1.07 16 41 H 0.10 1.03 4.53 -51.93 -0.24 0.79 16 42 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 43 H 0.11 2.10 7.43 -51.93 -0.39 1.72 16 44 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.40 5.47 8.80 -40.82 -0.36 5.12 16 46 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 47 H 0.08 1.04 7.40 -51.93 -0.38 0.66 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -35.62 357.15 -8.38 -44.00 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.41 Total: 6.09 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.52 Total: 0.53 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.01 Total: -48.67 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.18 Total: -24.47 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.62 -8.38 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579022994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.015 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds