Wall clock time and date at job start Tue Mar 31 2020 17:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47269 * 2 1 4 4 C 1.46503 * 120.00093 * 80.29289 * 3 2 1 5 5 C 1.50704 * 109.46994 * 89.99559 * 4 3 2 6 6 H 1.07991 * 120.00289 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99561 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00057 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47184 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47195 * 120.00235 * 9 7 5 12 12 H 1.48500 * 109.47421 * 240.00378 * 9 7 5 13 13 C 1.34769 * 120.00079 * 260.28818 * 3 2 1 14 14 O 1.21283 * 120.00327 * 181.54459 * 13 3 2 15 15 C 1.50702 * 119.99923 * 1.54888 * 13 3 2 16 16 C 1.50698 * 109.60649 * 51.88287 * 15 13 3 17 17 C 1.38239 * 119.99890 * 242.78353 * 16 15 13 18 18 C 1.38234 * 119.99734 * 179.76005 * 17 16 15 19 19 C 1.38237 * 120.00157 * 0.50650 * 18 17 16 20 20 C 1.38238 * 119.99965 * 359.74532 * 19 18 17 21 21 C 1.38238 * 120.00068 * 359.97438 * 20 19 18 22 22 C 1.53344 * 109.60252 * 291.55718 * 15 13 3 23 23 C 1.53075 * 108.42687 * 307.77427 * 22 15 13 24 24 C 1.50181 * 109.88901 * 311.10041 * 23 22 15 25 25 O 1.21280 * 118.24462 * 197.55637 * 24 23 22 26 26 N 1.33352 * 123.50685 * 17.58032 * 24 23 22 27 27 C 1.45751 * 124.10998 * 357.78001 * 26 24 23 28 28 H 1.08999 * 109.47325 * 292.31093 * 1 2 3 29 29 H 1.09002 * 109.47524 * 172.30896 * 1 2 3 30 30 H 1.09004 * 109.47089 * 52.30484 * 1 2 3 31 31 H 1.09005 * 109.46763 * 120.00015 * 2 1 3 32 32 H 1.08999 * 109.47217 * 239.99425 * 2 1 3 33 33 H 1.08994 * 109.47445 * 209.99875 * 4 3 2 34 34 H 1.09003 * 109.47058 * 329.99755 * 4 3 2 35 35 H 0.97005 * 119.99480 * 179.97438 * 8 7 5 36 36 H 1.07997 * 119.99959 * 359.97438 * 17 16 15 37 37 H 1.07998 * 120.00098 * 180.22742 * 18 17 16 38 38 H 1.08003 * 120.00290 * 179.72179 * 19 18 17 39 39 H 1.07997 * 120.00363 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.00461 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.67576 * 67.50829 * 22 15 13 42 42 H 1.09005 * 109.67878 * 188.04313 * 22 15 13 43 43 H 1.08997 * 109.40053 * 71.22821 * 23 22 15 44 44 H 1.09000 * 109.39994 * 191.05590 * 23 22 15 45 45 H 0.97002 * 117.94288 * 177.77740 * 26 24 23 46 46 H 1.09001 * 109.29719 * 258.76338 * 27 26 24 47 47 H 1.09001 * 109.30142 * 139.38806 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0609 2.1431 1.2506 5 6 3.3958 1.9374 1.9190 6 1 4.1384 1.3030 1.4582 7 6 3.6694 2.5601 3.1183 8 7 2.7652 3.3331 3.6792 9 14 5.3243 2.3058 3.9466 10 1 6.1584 1.3987 3.1179 11 1 6.0113 3.6143 4.0921 12 1 5.1191 1.7026 5.2879 13 6 2.4286 1.9509 -1.1504 14 8 2.8592 3.0847 -1.1459 15 6 2.3523 1.1791 -2.4425 16 6 0.9619 0.6256 -2.6196 17 6 0.7625 -0.7416 -2.6632 18 6 -0.5135 -1.2493 -2.8207 19 6 -1.5890 -0.3897 -2.9451 20 6 -1.3890 0.9776 -2.9067 21 6 -0.1136 1.4853 -2.7434 22 6 3.3646 0.0276 -2.4145 23 6 4.7369 0.5986 -2.0486 24 6 5.0353 1.7981 -2.9017 25 8 6.1853 2.1754 -2.9794 26 7 4.1033 2.4706 -3.5779 27 6 2.6934 2.1026 -3.6127 28 1 -0.3634 0.3901 0.9507 29 1 -0.3634 -1.0184 -0.1375 30 1 -0.3633 0.6284 -0.8132 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.9216 3.2025 1.0355 34 1 1.2662 1.7993 1.9127 35 1 2.9576 3.7709 4.5233 36 1 1.6033 -1.4131 -2.5708 37 1 -0.6697 -2.3175 -2.8511 38 1 -2.5854 -0.7863 -3.0726 39 1 -2.2291 1.6492 -3.0042 40 1 0.0427 2.5534 -2.7138 41 1 3.0628 -0.7083 -1.6693 42 1 3.4130 -0.4426 -3.3968 43 1 4.7390 0.8915 -0.9987 44 1 5.5010 -0.1609 -2.2141 45 1 4.3811 3.2540 -4.0780 46 1 2.4778 1.5905 -4.5504 47 1 2.0840 3.0042 -3.5496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579022994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:13 Heat of formation + Delta-G solvation = -46.966588 kcal Electronic energy + Delta-G solvation = -30810.746368 eV Core-core repulsion = 26958.137973 eV Total energy + Delta-G solvation = -3852.608396 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.77927 -40.54132 -39.61886 -37.46109 -36.86050 -35.05851 -34.28685 -32.74270 -31.91833 -31.28731 -29.64219 -28.89789 -26.17011 -25.60564 -24.66229 -23.78024 -22.87033 -22.33438 -21.24255 -19.16190 -18.85428 -18.60612 -17.68208 -17.44794 -17.10502 -17.03562 -16.84171 -16.40731 -15.73698 -15.57889 -15.36589 -15.16800 -14.86307 -14.75564 -14.64727 -14.42713 -14.17855 -13.96807 -13.65545 -13.38832 -13.32275 -13.28340 -13.02532 -12.83973 -12.65637 -12.51800 -12.42164 -12.32131 -12.03925 -11.89984 -11.70885 -11.66326 -11.54521 -10.81008 -10.67625 -10.64537 -10.08414 -9.61433 -9.46874 -9.38157 -8.25173 -6.38952 0.46545 0.60735 1.31149 1.34952 1.45624 1.58758 1.79591 2.25449 2.34198 2.41554 2.89520 3.04740 3.30584 3.49997 3.51935 3.65515 3.79630 4.06389 4.14037 4.19642 4.24294 4.35126 4.41801 4.48659 4.51818 4.57453 4.61171 4.70329 4.74481 4.82780 4.86545 4.92407 5.00584 5.08054 5.08972 5.13663 5.21280 5.25156 5.47566 5.57352 5.67785 5.70371 5.75488 5.77764 5.86186 6.04492 6.19014 6.30085 6.68685 6.81503 7.16634 7.26672 7.47597 8.81817 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.005637 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.021346 B = 4965.836114 C = 6508.256338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 N -0.589 5.589 4 C 0.267 3.733 5 C -0.535 4.535 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.511 3.489 14 O -0.588 6.588 15 C -0.047 4.047 16 C -0.075 4.075 17 C -0.111 4.111 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.113 4.113 23 C -0.141 4.141 24 C 0.520 3.480 25 O -0.614 6.614 26 N -0.699 5.699 27 C 0.139 3.861 28 H 0.026 0.974 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.121 0.879 33 H -0.008 1.008 34 H 0.018 0.982 35 H 0.266 0.734 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.069 0.931 44 H 0.127 0.873 45 H 0.402 0.598 46 H 0.116 0.884 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.631 -15.184 -17.937 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.037 4.037 3 N -0.319 5.319 4 C 0.145 3.855 5 C -0.573 4.573 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.299 3.701 14 O -0.469 6.469 15 C -0.050 4.050 16 C -0.076 4.076 17 C -0.129 4.129 18 C -0.125 4.125 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.181 4.181 24 C 0.308 3.692 25 O -0.498 6.498 26 N -0.348 5.348 27 C 0.015 3.985 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.010 0.990 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.170 0.830 37 H 0.172 0.828 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.148 0.852 43 H 0.087 0.913 44 H 0.145 0.855 45 H 0.237 0.763 46 H 0.134 0.866 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.977 -14.508 -17.661 24.938 hybrid contribution 0.923 1.528 1.204 2.153 sum -9.053 -12.980 -16.457 22.832 Atomic orbital electron populations 1.22499 0.95028 1.03734 1.01822 1.22286 0.95569 0.81794 1.04081 1.48090 1.61520 1.14755 1.07504 1.18617 0.95698 0.90285 0.80890 1.21699 1.00972 1.28993 1.05681 0.92936 1.25788 1.00689 0.94592 0.97902 1.70056 1.36008 1.31734 1.19005 0.85488 0.79436 0.77943 0.78724 1.19179 1.21194 1.19062 1.20809 0.77015 0.86527 0.85736 1.90684 1.47830 1.21349 1.87046 1.20062 0.96088 0.96908 0.91962 1.19136 0.91055 0.94860 1.02572 1.21372 0.99191 0.93209 0.99090 1.21436 0.91561 1.01239 0.98284 1.21478 1.00378 0.92757 0.98622 1.21256 0.96127 0.96708 0.99870 1.20940 0.93567 0.99044 1.00696 1.22201 0.90150 0.96140 1.06515 1.21703 1.01309 0.96077 0.98980 1.20446 0.84337 0.85434 0.78953 1.90683 1.22514 1.70570 1.66027 1.45197 1.08541 1.30862 1.50173 1.21388 0.80522 0.99081 0.97482 0.95498 0.88982 0.90664 0.91955 0.86213 0.99020 0.96359 0.92513 0.82959 0.82820 0.83853 0.85220 0.88264 0.87116 0.85244 0.91254 0.85469 0.76284 0.86591 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.49 8.12 71.98 0.58 -3.91 16 2 C 0.08 2.51 5.30 86.38 0.46 2.97 16 3 N -0.59 -24.25 2.46 -826.15 -2.04 -26.29 16 4 C 0.27 14.50 5.15 85.63 0.44 14.94 16 5 C -0.53 -31.22 9.39 25.60 0.24 -30.98 16 6 H 0.05 3.04 7.81 -2.92 -0.02 3.02 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 9 Si 0.96 46.47 29.54 68.60 2.03 48.50 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 C 0.51 20.16 4.55 87.66 0.40 20.56 16 14 O -0.59 -29.75 14.75 -3.04 -0.04 -29.80 16 15 C -0.05 -1.18 0.35 -53.59 -0.02 -1.20 16 16 C -0.08 -1.48 2.49 -19.86 -0.05 -1.53 16 17 C -0.11 -1.47 6.16 22.27 0.14 -1.33 16 18 C -0.11 -1.12 8.86 22.27 0.20 -0.92 16 19 C -0.11 -1.38 9.73 22.27 0.22 -1.16 16 20 C -0.12 -2.00 9.18 22.27 0.20 -1.79 16 21 C -0.12 -2.63 7.40 22.27 0.16 -2.47 16 22 C -0.11 -2.31 3.43 30.73 0.11 -2.20 16 23 C -0.14 -4.21 5.50 29.71 0.16 -4.05 16 24 C 0.52 18.61 7.17 87.72 0.63 19.24 16 25 O -0.61 -27.32 17.78 -3.03 -0.05 -27.37 16 26 N -0.70 -20.70 4.87 -467.32 -2.28 -22.98 16 27 C 0.14 3.29 5.07 86.49 0.44 3.73 16 28 H 0.03 0.83 7.99 -2.39 -0.02 0.81 16 29 H 0.09 1.72 7.51 -2.39 -0.02 1.70 16 30 H 0.07 1.92 3.14 -2.39 -0.01 1.91 16 31 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.12 2.63 1.62 -2.39 0.00 2.62 16 33 H -0.01 -0.53 7.44 -2.39 -0.02 -0.55 16 34 H 0.02 1.03 7.92 -2.39 -0.02 1.01 16 35 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 36 H 0.15 1.29 5.71 -2.91 -0.02 1.27 16 37 H 0.15 0.73 8.06 -2.91 -0.02 0.70 16 38 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 39 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.10 2.49 7.58 -2.91 -0.02 2.47 16 41 H 0.11 1.91 4.53 -2.39 -0.01 1.89 16 42 H 0.13 1.57 8.06 -2.38 -0.02 1.55 16 43 H 0.07 2.70 7.43 -2.39 -0.02 2.68 16 44 H 0.13 3.09 8.14 -2.39 -0.02 3.08 16 45 H 0.40 11.28 8.80 -92.71 -0.82 10.46 16 46 H 0.12 1.78 8.11 -2.39 -0.02 1.76 16 47 H 0.07 1.91 7.40 -2.39 -0.02 1.89 16 Total: -1.00 -85.68 357.15 2.86 -82.81 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.19 Total: 21.26 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 4.77 Total: 10.89 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -4.03 Total: -106.29 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -0.10 Total: -57.17 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -85.68 2.86 -82.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579022994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.843 kcal (2) G-P(sol) polarization free energy of solvation -85.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds