Wall clock time and date at job start Tue Mar 31 2020 16:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47275 * 2 1 4 4 C 1.50704 * 109.46717 * 239.99619 * 2 1 3 5 5 O 1.21284 * 120.00239 * 267.62118 * 4 2 1 6 6 N 1.34780 * 119.99709 * 87.62920 * 4 2 1 7 7 C 1.46534 * 124.98095 * 354.95740 * 6 4 2 8 8 C 1.53738 * 105.19798 * 179.97438 * 7 6 4 9 9 C 1.51215 * 104.58215 * 0.02562 * 8 7 6 10 10 C 1.38185 * 130.96940 * 180.02562 * 9 8 7 11 11 C 1.38230 * 120.14777 * 180.02562 * 10 9 8 12 12 C 1.38297 * 119.82575 * 359.92770 * 11 10 9 13 13 C 1.37840 * 120.22622 * 0.04912 * 12 11 10 14 14 C 1.38553 * 108.55739 * 359.97438 * 9 8 7 15 15 N 1.46903 * 109.47043 * 119.99972 * 2 1 3 16 16 C 1.48535 * 110.99928 * 177.59932 * 15 2 1 17 17 C 1.54935 * 103.22520 * 159.72168 * 16 15 2 18 18 C 1.54595 * 102.91905 * 322.58711 * 17 16 15 19 19 O 1.42903 * 110.39399 * 262.99564 * 18 17 16 20 20 C 1.50705 * 110.30869 * 140.87627 * 18 17 16 21 21 H 1.07995 * 119.99802 * 239.00683 * 20 18 17 22 22 C 1.37880 * 119.99964 * 59.00141 * 20 18 17 23 23 N 1.31518 * 119.99971 * 4.66090 * 22 20 18 24 24 Si 1.86801 * 120.00068 * 184.66430 * 22 20 18 25 25 H 1.48496 * 109.47253 * 94.98312 * 24 22 20 26 26 H 1.48498 * 109.46728 * 214.98747 * 24 22 20 27 27 H 1.48501 * 109.46870 * 334.98230 * 24 22 20 28 28 C 1.47895 * 110.99776 * 294.99983 * 15 2 1 29 29 H 1.09007 * 109.46737 * 303.86976 * 1 2 3 30 30 H 1.09003 * 109.47096 * 63.86741 * 1 2 3 31 31 H 1.09002 * 109.47460 * 183.86630 * 1 2 3 32 32 H 1.09003 * 110.30210 * 61.03327 * 7 6 4 33 33 H 1.09000 * 110.29855 * 298.89635 * 7 6 4 34 34 H 1.08996 * 110.41552 * 241.22428 * 8 7 6 35 35 H 1.09009 * 110.41355 * 118.77720 * 8 7 6 36 36 H 1.07990 * 119.93329 * 359.97438 * 10 9 8 37 37 H 1.08001 * 120.08775 * 179.97438 * 11 10 9 38 38 H 1.08005 * 119.89050 * 180.02562 * 12 11 10 39 39 H 1.08000 * 119.85940 * 179.97438 * 13 12 11 40 40 H 1.08995 * 110.66935 * 278.15819 * 16 15 2 41 41 H 1.08998 * 110.66468 * 41.28467 * 16 15 2 42 42 H 1.09002 * 110.72254 * 204.22995 * 17 16 15 43 43 H 1.08995 * 110.72242 * 80.94692 * 17 16 15 44 44 H 0.96700 * 114.00394 * 295.77305 * 19 18 17 45 45 H 0.96998 * 120.00302 * 179.97438 * 23 22 20 46 46 H 1.08994 * 109.91896 * 333.50354 * 28 15 2 47 47 H 1.09000 * 109.92229 * 94.60926 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 8 2.2755 -1.8980 -1.1883 6 7 2.2113 -0.0263 -2.3778 7 6 1.8550 1.3804 -2.5814 8 6 2.2505 1.6902 -4.0343 9 6 2.8189 0.3910 -4.5594 10 6 3.3353 0.0632 -5.7985 11 6 3.8015 -1.2155 -6.0401 12 6 3.7513 -2.1668 -5.0376 13 6 3.2375 -1.8441 -3.7999 14 6 2.7645 -0.5547 -3.5483 15 7 2.0197 -0.6925 1.1995 16 6 3.5033 -0.7628 1.2051 17 6 3.8407 -1.0123 2.6965 18 6 2.7914 -0.1516 3.4369 19 8 3.3516 1.1112 3.8025 20 6 2.2911 -0.8748 4.6608 21 1 1.2395 -1.0977 4.7641 22 6 3.1761 -1.2519 5.6486 23 7 4.4409 -0.9008 5.5674 24 14 2.5785 -2.2614 7.1023 25 1 2.8136 -3.7029 6.8339 26 1 3.3205 -1.8578 8.3236 27 1 1.1263 -2.0260 7.3049 28 6 1.6461 0.0442 2.4263 29 1 -0.3633 0.5728 0.8534 30 1 -0.3633 0.4526 -0.9226 31 1 -0.3634 -1.0253 0.0693 32 1 2.4136 2.0154 -1.8937 33 1 0.7832 1.5229 -2.4428 34 1 3.0059 2.4754 -4.0636 35 1 1.3742 1.9827 -4.6129 36 1 3.3741 0.8073 -6.5801 37 1 4.2044 -1.4708 -7.0091 38 1 4.1156 -3.1661 -5.2251 39 1 3.2008 -2.5918 -3.0214 40 1 3.8516 -1.5911 0.5881 41 1 3.9343 0.1789 0.8654 42 1 4.8504 -0.6715 2.9258 43 1 3.7218 -2.0662 2.9478 44 1 4.0782 1.0502 4.4377 45 1 5.0634 -1.1657 6.2625 46 1 1.5267 1.1039 2.2013 47 1 0.7169 -0.3563 2.8316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:26 Heat of formation + Delta-G solvation = -37.110172 kcal Electronic energy + Delta-G solvation = -29002.609643 eV Core-core repulsion = 25150.428654 eV Total energy + Delta-G solvation = -3852.180989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31343 -39.29838 -37.86250 -36.46242 -35.03509 -32.55901 -32.11586 -32.04389 -29.94709 -29.20125 -28.18913 -27.76385 -25.25738 -24.16245 -23.38459 -22.36052 -21.46149 -20.69785 -19.35852 -19.14573 -17.40475 -17.03137 -16.65034 -16.31967 -15.94928 -15.47482 -15.07348 -14.82842 -14.47998 -14.22855 -14.01200 -13.91388 -13.53284 -13.21353 -12.96517 -12.92527 -12.74343 -12.55861 -12.20486 -12.16286 -12.01243 -11.84408 -11.79460 -11.44616 -11.33185 -11.19829 -11.06409 -10.89515 -10.60249 -10.45712 -10.37302 -10.25960 -9.95303 -9.56619 -9.14994 -8.94160 -8.55805 -8.11653 -7.90349 -7.85669 -6.18476 -4.24310 1.14253 1.25520 2.58588 2.64656 3.26098 3.33343 3.36984 3.67087 4.05495 4.26478 4.34046 4.41109 4.55224 4.72524 4.84661 4.96137 5.04196 5.07929 5.14811 5.22200 5.24776 5.32191 5.46589 5.53349 5.54838 5.60057 5.69902 5.81803 5.86721 5.97918 6.07134 6.14895 6.22640 6.24518 6.28559 6.31807 6.35376 6.44117 6.52508 6.90973 6.91903 7.05691 7.21818 7.26058 7.49819 7.59796 7.66543 7.84194 8.08180 8.16921 8.77535 9.40370 9.50681 10.89256 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.023329 B = 0.002866 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.940152 B = 9765.861535 C =10123.455437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.063 3.937 3 H 0.059 0.941 4 C 0.531 3.469 5 O -0.489 6.489 6 N -0.561 5.561 7 C 0.098 3.902 8 C -0.084 4.084 9 C -0.144 4.144 10 C -0.080 4.080 11 C -0.148 4.148 12 C -0.093 4.093 13 C -0.134 4.134 14 C 0.154 3.846 15 N -0.490 5.490 16 C 0.029 3.971 17 C -0.113 4.113 18 C 0.243 3.757 19 O -0.596 6.596 20 C -0.528 4.528 21 H 0.062 0.938 22 C 0.068 3.932 23 N -0.897 5.897 24 Si 0.900 3.100 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.273 1.273 28 C 0.058 3.942 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.140 0.860 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.383 0.617 45 H 0.266 0.734 46 H 0.037 0.963 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 5.340 -21.185 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.049 4.049 3 H 0.076 0.924 4 C 0.320 3.680 5 O -0.360 6.360 6 N -0.286 5.286 7 C -0.024 4.024 8 C -0.121 4.121 9 C -0.147 4.147 10 C -0.099 4.099 11 C -0.167 4.167 12 C -0.112 4.112 13 C -0.154 4.154 14 C 0.059 3.941 15 N -0.216 5.216 16 C -0.099 4.099 17 C -0.152 4.152 18 C 0.203 3.797 19 O -0.405 6.405 20 C -0.567 4.567 21 H 0.081 0.919 22 C -0.134 4.134 23 N -0.537 5.537 24 Si 0.728 3.272 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.069 4.069 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.234 0.766 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.797 4.356 -21.275 22.046 hybrid contribution 0.616 0.080 1.167 1.322 sum -3.181 4.436 -20.108 20.835 Atomic orbital electron populations 1.21749 0.91807 1.03940 1.02050 1.21776 0.97640 0.95735 0.89790 0.92362 1.20772 0.77011 0.87290 0.82936 1.90671 1.47330 1.14713 1.83294 1.46097 1.59602 1.12411 1.10445 1.22201 1.01638 0.81052 0.97525 1.21080 1.01503 0.95644 0.93849 1.20009 1.04994 0.95456 0.94290 1.20321 0.98012 0.96646 0.94897 1.20990 1.02831 0.93366 0.99513 1.20946 0.98256 0.99550 0.92430 1.21021 1.00952 0.94972 0.98482 1.18437 0.95627 0.94080 0.85975 1.64804 1.10991 1.46274 0.99516 1.23382 0.86997 0.98941 1.00552 1.22929 1.00130 1.01844 0.90283 1.19358 0.87762 0.81251 0.91294 1.86076 1.55423 1.32466 1.66567 1.21663 0.94689 1.36674 1.03630 0.91938 1.25016 0.94815 0.95327 0.98201 1.69689 1.02981 1.46229 1.34848 0.86446 0.78920 0.80355 0.81493 1.20548 1.21208 1.19768 1.22890 1.00082 0.94888 0.89052 0.90732 0.92492 0.90766 0.89736 0.89696 0.89125 0.89151 0.85935 0.85814 0.85580 0.84268 0.90937 0.95395 0.91576 0.91197 0.76631 0.92398 0.94503 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.09 37.16 0.34 -1.50 16 2 C 0.06 1.01 1.66 -68.86 -0.11 0.90 16 3 H 0.06 0.88 6.97 -51.93 -0.36 0.51 16 4 C 0.53 8.79 6.18 -10.98 -0.07 8.72 16 5 O -0.49 -9.70 13.68 5.55 0.08 -9.62 16 6 N -0.56 -7.67 3.13 -112.90 -0.35 -8.02 16 7 C 0.10 0.93 6.45 -3.64 -0.02 0.90 16 8 C -0.08 -0.66 6.93 -27.25 -0.19 -0.85 16 9 C -0.14 -1.56 6.23 -104.27 -0.65 -2.21 16 10 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 11 C -0.15 -1.40 10.06 -39.56 -0.40 -1.79 16 12 C -0.09 -1.03 10.02 -39.71 -0.40 -1.42 16 13 C -0.13 -1.86 9.46 -39.21 -0.37 -2.23 16 14 C 0.15 2.11 6.62 -83.57 -0.55 1.55 16 15 N -0.49 -9.87 4.84 -223.89 -1.08 -10.96 16 16 C 0.03 0.61 5.61 -1.90 -0.01 0.60 16 17 C -0.11 -2.73 5.30 -24.87 -0.13 -2.86 16 18 C 0.24 6.08 0.99 -90.41 -0.09 5.99 16 19 O -0.60 -15.38 12.94 -35.23 -0.46 -15.84 16 20 C -0.53 -14.27 8.12 -34.44 -0.28 -14.55 16 21 H 0.06 1.68 7.36 -52.49 -0.39 1.30 16 22 C 0.07 1.82 5.22 -17.82 -0.09 1.73 16 23 N -0.90 -24.17 10.89 55.43 0.60 -23.56 16 24 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.06 1.25 5.08 -2.76 -0.01 1.24 16 29 H 0.07 0.96 7.48 -51.92 -0.39 0.57 16 30 H 0.06 0.60 7.33 -51.93 -0.38 0.22 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 0.74 7.70 -51.93 -0.40 0.34 16 33 H 0.08 0.65 7.33 -51.93 -0.38 0.27 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.54 8.14 -51.92 -0.42 0.11 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 39 H 0.14 2.20 6.30 -52.49 -0.33 1.87 16 40 H 0.07 1.56 7.13 -51.93 -0.37 1.19 16 41 H 0.03 0.57 8.02 -51.93 -0.42 0.16 16 42 H 0.07 1.64 7.98 -51.93 -0.41 1.23 16 43 H 0.07 1.82 7.86 -51.93 -0.41 1.41 16 44 H 0.38 10.07 7.31 45.56 0.33 10.41 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.04 0.76 7.47 -51.93 -0.39 0.37 16 47 H 0.08 1.78 7.40 -51.93 -0.38 1.40 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -31.00 369.94 -10.45 -41.45 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -6.35 Total: 11.96 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.44 Total: -6.94 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.83 Total: -42.54 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.38 Total: -25.46 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.00 -10.45 -41.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.339 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds