Wall clock time and date at job start Tue Mar 31 2020 16:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47275 * 2 1 4 4 C 1.50704 * 109.46717 * 239.99619 * 2 1 3 5 5 O 1.21284 * 120.00239 * 267.62118 * 4 2 1 6 6 N 1.34780 * 119.99709 * 87.62920 * 4 2 1 7 7 C 1.46534 * 124.98095 * 354.95740 * 6 4 2 8 8 C 1.53738 * 105.19798 * 179.97438 * 7 6 4 9 9 C 1.51215 * 104.58215 * 0.02562 * 8 7 6 10 10 C 1.38185 * 130.96940 * 180.02562 * 9 8 7 11 11 C 1.38230 * 120.14777 * 180.02562 * 10 9 8 12 12 C 1.38297 * 119.82575 * 359.92770 * 11 10 9 13 13 C 1.37840 * 120.22622 * 0.04912 * 12 11 10 14 14 C 1.38553 * 108.55739 * 359.97438 * 9 8 7 15 15 N 1.46903 * 109.47043 * 119.99972 * 2 1 3 16 16 C 1.48535 * 110.99928 * 177.59932 * 15 2 1 17 17 C 1.54935 * 103.22520 * 159.72168 * 16 15 2 18 18 C 1.54595 * 102.91905 * 322.58711 * 17 16 15 19 19 O 1.42903 * 110.39399 * 262.99564 * 18 17 16 20 20 C 1.50705 * 110.30869 * 140.87627 * 18 17 16 21 21 H 1.07995 * 119.99802 * 239.00683 * 20 18 17 22 22 C 1.37880 * 119.99964 * 59.00141 * 20 18 17 23 23 N 1.31518 * 119.99971 * 4.66090 * 22 20 18 24 24 Si 1.86801 * 120.00068 * 184.66430 * 22 20 18 25 25 H 1.48496 * 109.47253 * 94.98312 * 24 22 20 26 26 H 1.48498 * 109.46728 * 214.98747 * 24 22 20 27 27 H 1.48501 * 109.46870 * 334.98230 * 24 22 20 28 28 C 1.47895 * 110.99776 * 294.99983 * 15 2 1 29 29 H 1.09007 * 109.46737 * 303.86976 * 1 2 3 30 30 H 1.09003 * 109.47096 * 63.86741 * 1 2 3 31 31 H 1.09002 * 109.47460 * 183.86630 * 1 2 3 32 32 H 1.09003 * 110.30210 * 61.03327 * 7 6 4 33 33 H 1.09000 * 110.29855 * 298.89635 * 7 6 4 34 34 H 1.08996 * 110.41552 * 241.22428 * 8 7 6 35 35 H 1.09009 * 110.41355 * 118.77720 * 8 7 6 36 36 H 1.07990 * 119.93329 * 359.97438 * 10 9 8 37 37 H 1.08001 * 120.08775 * 179.97438 * 11 10 9 38 38 H 1.08005 * 119.89050 * 180.02562 * 12 11 10 39 39 H 1.08000 * 119.85940 * 179.97438 * 13 12 11 40 40 H 1.08995 * 110.66935 * 278.15819 * 16 15 2 41 41 H 1.08998 * 110.66468 * 41.28467 * 16 15 2 42 42 H 1.09002 * 110.72254 * 204.22995 * 17 16 15 43 43 H 1.08995 * 110.72242 * 80.94692 * 17 16 15 44 44 H 0.96700 * 114.00394 * 295.77305 * 19 18 17 45 45 H 0.96998 * 120.00302 * 179.97438 * 23 22 20 46 46 H 1.08994 * 109.91896 * 333.50354 * 28 15 2 47 47 H 1.09000 * 109.92229 * 94.60926 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 8 2.2755 -1.8980 -1.1883 6 7 2.2113 -0.0263 -2.3778 7 6 1.8550 1.3804 -2.5814 8 6 2.2505 1.6902 -4.0343 9 6 2.8189 0.3910 -4.5594 10 6 3.3353 0.0632 -5.7985 11 6 3.8015 -1.2155 -6.0401 12 6 3.7513 -2.1668 -5.0376 13 6 3.2375 -1.8441 -3.7999 14 6 2.7645 -0.5547 -3.5483 15 7 2.0197 -0.6925 1.1995 16 6 3.5033 -0.7628 1.2051 17 6 3.8407 -1.0123 2.6965 18 6 2.7914 -0.1516 3.4369 19 8 3.3516 1.1112 3.8025 20 6 2.2911 -0.8748 4.6608 21 1 1.2395 -1.0977 4.7641 22 6 3.1761 -1.2519 5.6486 23 7 4.4409 -0.9008 5.5674 24 14 2.5785 -2.2614 7.1023 25 1 2.8136 -3.7029 6.8339 26 1 3.3205 -1.8578 8.3236 27 1 1.1263 -2.0260 7.3049 28 6 1.6461 0.0442 2.4263 29 1 -0.3633 0.5728 0.8534 30 1 -0.3633 0.4526 -0.9226 31 1 -0.3634 -1.0253 0.0693 32 1 2.4136 2.0154 -1.8937 33 1 0.7832 1.5229 -2.4428 34 1 3.0059 2.4754 -4.0636 35 1 1.3742 1.9827 -4.6129 36 1 3.3741 0.8073 -6.5801 37 1 4.2044 -1.4708 -7.0091 38 1 4.1156 -3.1661 -5.2251 39 1 3.2008 -2.5918 -3.0214 40 1 3.8516 -1.5911 0.5881 41 1 3.9343 0.1789 0.8654 42 1 4.8504 -0.6715 2.9258 43 1 3.7218 -2.0662 2.9478 44 1 4.0782 1.0502 4.4377 45 1 5.0634 -1.1657 6.2625 46 1 1.5267 1.1039 2.2013 47 1 0.7169 -0.3563 2.8316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:25 Heat of formation + Delta-G solvation = -58.109911 kcal Electronic energy + Delta-G solvation = -29003.520260 eV Core-core repulsion = 25150.428654 eV Total energy + Delta-G solvation = -3853.091606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.30705 -40.62165 -39.35756 -37.38557 -36.78010 -34.18026 -33.76373 -33.20914 -30.92889 -30.02415 -29.96903 -29.35924 -26.89999 -25.51722 -24.14544 -23.56801 -22.50011 -22.14583 -21.13851 -20.34500 -19.12868 -18.48185 -17.74407 -17.20945 -17.10329 -16.88787 -16.57894 -16.26832 -15.84311 -15.64526 -15.45793 -15.07456 -14.67762 -14.60432 -14.38665 -13.97869 -13.75271 -13.67030 -13.59678 -13.33906 -13.27339 -13.21583 -13.09425 -12.90410 -12.71274 -12.65799 -12.48319 -12.38631 -12.30405 -12.08377 -11.95620 -11.90738 -11.21564 -11.13887 -10.80393 -10.60072 -10.14527 -9.75476 -9.44370 -8.80910 -8.22963 -6.36012 0.25048 0.41161 1.39591 1.42092 1.46250 1.51642 1.61909 2.38698 2.83101 2.86981 3.05023 3.14436 3.56882 3.68917 3.79062 3.91125 3.95565 4.11329 4.14512 4.15800 4.20371 4.26167 4.33516 4.36272 4.47141 4.52638 4.55862 4.62341 4.65965 4.74481 4.81044 4.92161 4.99863 5.02292 5.11203 5.14633 5.17878 5.29285 5.35536 5.45784 5.49913 5.53616 5.60750 5.73232 5.83461 5.99694 6.09119 6.13278 6.25710 6.68617 6.91280 7.32069 7.41329 8.83291 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.023329 B = 0.002866 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.940152 B = 9765.861535 C =10123.455437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.062 3.938 3 H 0.078 0.922 4 C 0.526 3.474 5 O -0.539 6.539 6 N -0.559 5.559 7 C 0.084 3.916 8 C -0.076 4.076 9 C -0.140 4.140 10 C -0.079 4.079 11 C -0.140 4.140 12 C -0.103 4.103 13 C -0.164 4.164 14 C 0.114 3.886 15 N -0.503 5.503 16 C 0.046 3.954 17 C -0.105 4.105 18 C 0.230 3.770 19 O -0.598 6.598 20 C -0.553 4.553 21 H 0.057 0.943 22 C 0.027 3.973 23 N -0.913 5.913 24 Si 0.959 3.041 25 H -0.280 1.280 26 H -0.279 1.279 27 H -0.269 1.269 28 C 0.070 3.930 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.139 0.861 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.051 0.949 43 H 0.041 0.959 44 H 0.377 0.623 45 H 0.268 0.732 46 H 0.050 0.950 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 7.530 -23.642 25.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.050 4.050 3 H 0.095 0.905 4 C 0.316 3.684 5 O -0.414 6.414 6 N -0.283 5.283 7 C -0.036 4.036 8 C -0.113 4.113 9 C -0.143 4.143 10 C -0.097 4.097 11 C -0.158 4.158 12 C -0.122 4.122 13 C -0.185 4.185 14 C 0.019 3.981 15 N -0.229 5.229 16 C -0.082 4.082 17 C -0.144 4.144 18 C 0.190 3.810 19 O -0.406 6.406 20 C -0.591 4.591 21 H 0.075 0.925 22 C -0.173 4.173 23 N -0.553 5.553 24 Si 0.785 3.215 25 H -0.206 1.206 26 H -0.205 1.205 27 H -0.194 1.194 28 C -0.057 4.057 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.177 0.823 37 H 0.174 0.826 38 H 0.157 0.843 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.227 0.773 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.730 6.589 -23.775 25.121 hybrid contribution 0.956 -0.593 1.797 2.120 sum -3.774 5.996 -21.978 23.092 Atomic orbital electron populations 1.21753 0.89592 1.03375 1.04234 1.21908 0.99340 0.95912 0.87814 0.90462 1.20819 0.76811 0.86829 0.83925 1.90656 1.49806 1.16709 1.84235 1.46107 1.58730 1.13865 1.09624 1.22623 1.03249 0.78641 0.99098 1.21198 1.03024 0.94462 0.92593 1.20450 1.03959 0.95994 0.93897 1.20801 0.96472 0.97298 0.95128 1.21417 1.01334 0.93006 1.00079 1.21167 0.98179 1.00928 0.91903 1.20999 1.03316 0.95156 0.99060 1.18762 0.97534 0.94806 0.86998 1.64692 1.09915 1.47524 1.00775 1.23112 0.88197 0.98883 0.98012 1.22711 0.99301 0.99888 0.92521 1.19559 0.88855 0.80892 0.91688 1.86065 1.55227 1.32977 1.66378 1.21931 0.94625 1.37665 1.04901 0.92526 1.25709 0.95024 0.96110 1.00501 1.69768 1.03593 1.46494 1.35463 0.85527 0.78594 0.78670 0.78718 1.20643 1.20464 1.19371 1.22683 0.98487 0.95731 0.88823 0.89969 0.89020 0.92531 0.88971 0.87490 0.87088 0.86375 0.82298 0.82625 0.84339 0.87756 0.91885 0.94582 0.93059 0.93981 0.77279 0.92225 0.93196 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.09 71.98 0.65 -2.66 16 2 C 0.06 1.95 1.66 44.17 0.07 2.03 16 3 H 0.08 2.16 6.97 -2.39 -0.02 2.14 16 4 C 0.53 17.68 6.18 87.66 0.54 18.23 16 5 O -0.54 -22.72 13.68 -3.04 -0.04 -22.76 16 6 N -0.56 -14.89 3.13 -629.49 -1.97 -16.86 16 7 C 0.08 1.34 6.45 86.62 0.56 1.90 16 8 C -0.08 -0.88 6.93 30.26 0.21 -0.67 16 9 C -0.14 -2.64 6.23 -19.64 -0.12 -2.76 16 10 C -0.08 -1.18 10.04 22.26 0.22 -0.96 16 11 C -0.14 -2.25 10.06 22.28 0.22 -2.02 16 12 C -0.10 -2.25 10.02 22.19 0.22 -2.03 16 13 C -0.16 -4.82 9.46 22.51 0.21 -4.61 16 14 C 0.11 3.07 6.62 38.28 0.25 3.32 16 15 N -0.50 -20.52 4.84 -862.26 -4.17 -24.70 16 16 C 0.05 1.99 5.61 86.65 0.49 2.48 16 17 C -0.11 -5.30 5.30 31.80 0.17 -5.13 16 18 C 0.23 11.69 0.99 -10.66 -0.01 11.68 16 19 O -0.60 -31.20 12.94 -148.98 -1.93 -33.13 16 20 C -0.55 -30.45 8.12 25.60 0.21 -30.24 16 21 H 0.06 3.10 7.36 -2.91 -0.02 3.08 16 22 C 0.03 1.45 5.22 84.65 0.44 1.89 16 23 N -0.91 -50.07 10.89 21.45 0.23 -49.84 16 24 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C 0.07 3.02 5.08 86.45 0.44 3.46 16 29 H 0.08 1.94 7.48 -2.38 -0.02 1.92 16 30 H 0.09 1.65 7.33 -2.39 -0.02 1.63 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.32 7.70 -2.39 -0.02 1.30 16 33 H 0.11 1.20 7.33 -2.39 -0.02 1.19 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.16 1.23 8.06 -2.92 -0.02 1.21 16 37 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.10 3.71 6.30 -2.91 -0.02 3.69 16 40 H 0.06 2.87 7.13 -2.39 -0.02 2.85 16 41 H 0.04 1.50 8.02 -2.39 -0.02 1.48 16 42 H 0.05 2.66 7.98 -2.39 -0.02 2.64 16 43 H 0.04 2.30 7.86 -2.39 -0.02 2.28 16 44 H 0.38 20.30 7.31 -74.06 -0.54 19.76 16 45 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.05 1.99 7.47 -2.39 -0.02 1.97 16 47 H 0.08 3.49 7.40 -2.39 -0.02 3.48 16 Total: -1.00 -71.02 369.94 -0.62 -71.64 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 0.44 Total: 36.26 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 4.79 Total: -6.10 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -5.91 Total: -91.39 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -1.97 Total: -55.89 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.02 -0.62 -71.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.534 kcal (2) G-P(sol) polarization free energy of solvation -71.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds