Wall clock time and date at job start Tue Mar 31 2020 16:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47067 * 2 1 4 4 C 1.50703 * 109.47043 * 240.00173 * 2 1 3 5 5 O 1.21283 * 120.00195 * 265.06627 * 4 2 1 6 6 N 1.34779 * 119.99765 * 85.07059 * 4 2 1 7 7 C 1.46536 * 124.97826 * 354.66680 * 6 4 2 8 8 C 1.53745 * 105.19450 * 179.97438 * 7 6 4 9 9 C 1.51213 * 104.58471 * 0.02562 * 8 7 6 10 10 C 1.38185 * 130.97087 * 180.02562 * 9 8 7 11 11 C 1.38227 * 120.14857 * 179.97438 * 10 9 8 12 12 C 1.38298 * 119.82501 * 0.23044 * 11 10 9 13 13 C 1.37836 * 120.22593 * 359.50868 * 12 11 10 14 14 C 1.38556 * 108.55796 * 359.97438 * 9 8 7 15 15 N 1.46902 * 109.47082 * 120.00305 * 2 1 3 16 16 C 1.47441 * 110.99742 * 179.87641 * 15 2 1 17 17 C 1.54314 * 107.23583 * 123.25672 * 16 15 2 18 18 C 1.55146 * 103.01827 * 22.28256 * 17 16 15 19 19 O 1.42900 * 110.98893 * 82.43797 * 18 17 16 20 20 C 1.50694 * 110.98927 * 206.21660 * 18 17 16 21 21 H 1.08004 * 120.00189 * 24.65153 * 20 18 17 22 22 C 1.37875 * 119.99833 * 204.64711 * 20 18 17 23 23 N 1.31520 * 120.00234 * 173.51565 * 22 20 18 24 24 Si 1.86802 * 120.00134 * 353.51225 * 22 20 18 25 25 H 1.48505 * 109.46909 * 86.10910 * 24 22 20 26 26 H 1.48498 * 109.47231 * 206.10221 * 24 22 20 27 27 H 1.48495 * 109.47299 * 326.10729 * 24 22 20 28 28 C 1.47844 * 111.00132 * 300.71454 * 15 2 1 29 29 H 1.09007 * 109.46960 * 185.16276 * 1 2 3 30 30 H 1.09002 * 109.47293 * 305.16361 * 1 2 3 31 31 H 1.09003 * 109.47399 * 65.17031 * 1 2 3 32 32 H 1.08995 * 110.30184 * 61.05719 * 7 6 4 33 33 H 1.09000 * 110.29844 * 298.91376 * 7 6 4 34 34 H 1.08997 * 110.41231 * 241.22407 * 8 7 6 35 35 H 1.09005 * 110.41387 * 118.77858 * 8 7 6 36 36 H 1.07999 * 119.92663 * 359.95495 * 10 9 8 37 37 H 1.08000 * 120.08761 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.88668 * 179.72062 * 12 11 10 39 39 H 1.08006 * 119.85835 * 180.27676 * 13 12 11 40 40 H 1.09004 * 109.88687 * 242.66395 * 16 15 2 41 41 H 1.08999 * 109.89058 * 3.84830 * 16 15 2 42 42 H 1.09003 * 110.70989 * 140.66394 * 17 16 15 43 43 H 1.08993 * 110.70765 * 263.72665 * 17 16 15 44 44 H 0.96698 * 113.99996 * 56.24718 * 19 18 17 45 45 H 0.96994 * 119.99991 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.37345 * 332.47090 * 28 15 2 47 47 H 1.09002 * 110.37017 * 94.80264 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3196 -1.8875 -1.1764 6 7 2.1623 -0.0376 -2.3911 7 6 1.7450 1.3501 -2.6090 8 6 2.1012 1.6528 -4.0736 9 6 2.7127 0.3697 -4.5898 10 6 3.2196 0.0437 -5.8333 11 6 3.7342 -1.2182 -6.0641 12 6 3.7365 -2.1566 -5.0482 13 6 3.2369 -1.8341 -3.8047 14 6 2.7154 -0.5614 -3.5638 15 7 2.0196 -0.6926 1.1994 16 6 3.4935 -0.7148 1.2319 17 6 3.9316 -0.0574 2.5576 18 6 2.6766 -0.2132 3.4563 19 8 2.6307 -1.5119 4.0507 20 6 2.6313 0.8620 4.5112 21 1 3.1397 1.8008 4.3477 22 6 1.9408 0.6474 5.6851 23 7 2.0058 1.5308 6.6573 24 14 0.9128 -0.8982 5.8949 25 1 1.7733 -2.0011 6.3934 26 1 -0.1758 -0.6398 6.8712 27 1 0.3239 -1.2822 4.5869 28 6 1.5316 -0.0323 2.4289 29 1 -0.3633 -1.0236 0.0925 30 1 -0.3634 0.5918 0.8401 31 1 -0.3634 0.4315 -0.9327 32 1 2.2898 2.0180 -1.9418 33 1 0.6711 1.4511 -2.4522 34 1 2.8231 2.4675 -4.1288 35 1 1.2033 1.9003 -4.6399 36 1 3.2133 0.7764 -6.6267 37 1 4.1297 -1.4721 -7.0365 38 1 4.1342 -3.1443 -5.2288 39 1 3.2457 -2.5701 -3.0142 40 1 3.8498 -1.7442 1.1930 41 1 3.8916 -0.1503 0.3888 42 1 4.7818 -0.5867 2.9878 43 1 4.1715 0.9948 2.4051 44 1 3.4185 -1.7377 4.5638 45 1 1.5203 1.3796 7.4833 46 1 1.3508 1.0268 2.2447 47 1 0.6224 -0.5170 2.7846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:30 Heat of formation + Delta-G solvation = -31.451561 kcal Electronic energy + Delta-G solvation = -29124.544788 eV Core-core repulsion = 25272.609174 eV Total energy + Delta-G solvation = -3851.935614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37676 -39.46497 -38.13146 -36.51828 -35.39792 -32.65411 -32.34448 -32.22910 -30.05084 -29.24894 -28.62495 -28.06676 -25.39108 -24.12962 -23.42108 -22.50969 -21.55449 -20.77819 -19.69716 -19.14068 -17.45619 -17.33888 -16.66790 -16.34794 -16.03023 -15.65192 -15.17075 -15.05113 -14.69625 -14.44240 -14.28025 -13.88175 -13.82073 -13.16458 -13.03720 -12.97417 -12.89177 -12.62904 -12.45214 -12.29709 -12.14958 -12.06784 -11.84683 -11.73270 -11.65429 -11.30099 -11.26402 -11.14298 -10.54566 -10.50304 -10.40188 -10.17735 -10.11621 -9.64232 -9.18677 -8.99104 -8.58323 -8.41851 -7.95510 -7.81083 -6.17488 -4.29370 1.09203 1.20485 2.53893 2.58040 3.50881 3.56563 3.62095 3.76403 4.00632 4.22222 4.31910 4.49933 4.54316 4.68238 4.80047 4.91049 4.99871 5.04346 5.11261 5.15028 5.19106 5.26777 5.28247 5.34120 5.41881 5.49504 5.50558 5.62669 5.67689 5.80087 5.82836 5.89827 6.08095 6.16978 6.21817 6.24309 6.27083 6.28313 6.39257 6.49775 6.69308 6.77163 6.86214 7.05361 7.15408 7.31333 7.46308 7.60322 8.02616 8.16931 8.69650 8.85847 9.45512 10.91231 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.002984 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.211020 B = 9381.346894 C = 9664.822983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.060 0.940 4 C 0.529 3.471 5 O -0.489 6.489 6 N -0.561 5.561 7 C 0.098 3.902 8 C -0.084 4.084 9 C -0.144 4.144 10 C -0.080 4.080 11 C -0.148 4.148 12 C -0.093 4.093 13 C -0.134 4.134 14 C 0.154 3.846 15 N -0.508 5.508 16 C 0.053 3.947 17 C -0.159 4.159 18 C 0.224 3.776 19 O -0.553 6.553 20 C -0.553 4.553 21 H 0.077 0.923 22 C 0.073 3.927 23 N -0.891 5.891 24 Si 0.949 3.051 25 H -0.292 1.292 26 H -0.328 1.328 27 H -0.267 1.267 28 C 0.056 3.944 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.368 0.632 45 H 0.266 0.734 46 H 0.057 0.943 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 0.124 -24.166 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.045 4.045 3 H 0.078 0.922 4 C 0.318 3.682 5 O -0.360 6.360 6 N -0.286 5.286 7 C -0.025 4.025 8 C -0.121 4.121 9 C -0.147 4.147 10 C -0.099 4.099 11 C -0.167 4.167 12 C -0.112 4.112 13 C -0.155 4.155 14 C 0.058 3.942 15 N -0.233 5.233 16 C -0.075 4.075 17 C -0.198 4.198 18 C 0.183 3.817 19 O -0.360 6.360 20 C -0.591 4.591 21 H 0.095 0.905 22 C -0.132 4.132 23 N -0.526 5.526 24 Si 0.785 3.215 25 H -0.220 1.220 26 H -0.259 1.259 27 H -0.193 1.193 28 C -0.070 4.070 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.215 0.785 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.132 -0.989 -24.085 24.105 hybrid contribution 0.410 0.304 0.468 0.693 sum 0.278 -0.685 -23.617 23.628 Atomic orbital electron populations 1.21799 0.91796 1.04058 1.02276 1.21761 0.97613 0.95637 0.89496 0.92217 1.20816 0.77226 0.87155 0.82965 1.90668 1.46471 1.15165 1.83741 1.46106 1.58883 1.14000 1.09617 1.22218 1.01289 0.81590 0.97363 1.21085 1.01413 0.95830 0.93782 1.20017 1.04811 0.95786 0.94083 1.20332 0.97870 0.96734 0.94923 1.20995 1.02602 0.93625 0.99444 1.20943 0.98438 0.99500 0.92329 1.21008 1.00830 0.95141 0.98481 1.18437 0.95650 0.94175 0.85907 1.63587 1.08678 1.50756 1.00306 1.22717 0.87338 1.00705 0.96697 1.23408 1.00237 1.00307 0.95808 1.20135 0.89550 0.81621 0.90350 1.86140 1.44030 1.36351 1.69482 1.21214 1.35581 1.01695 1.00561 0.90482 1.25159 0.95382 0.97622 0.94999 1.69976 1.41150 1.36259 1.05194 0.85666 0.78137 0.81064 0.76632 1.21971 1.25948 1.19264 1.23483 1.00130 0.96394 0.87021 0.90822 0.90483 0.92320 0.89705 0.89618 0.89099 0.89115 0.85901 0.85793 0.85592 0.84325 0.90717 0.94879 0.91478 0.91417 0.78492 0.92480 0.92487 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.95 37.16 0.33 -1.55 16 2 C 0.07 1.03 1.50 -68.86 -0.10 0.93 16 3 H 0.06 0.84 7.22 -51.93 -0.38 0.46 16 4 C 0.53 8.35 5.87 -10.98 -0.06 8.28 16 5 O -0.49 -9.30 14.27 5.55 0.08 -9.22 16 6 N -0.56 -7.30 3.13 -112.90 -0.35 -7.65 16 7 C 0.10 0.87 6.46 -3.63 -0.02 0.85 16 8 C -0.08 -0.63 6.94 -27.24 -0.19 -0.81 16 9 C -0.14 -1.48 6.23 -104.27 -0.65 -2.13 16 10 C -0.08 -0.71 10.04 -39.60 -0.40 -1.11 16 11 C -0.15 -1.32 10.06 -39.56 -0.40 -1.72 16 12 C -0.09 -0.98 10.02 -39.71 -0.40 -1.38 16 13 C -0.13 -1.78 9.46 -39.21 -0.37 -2.15 16 14 C 0.15 2.01 6.62 -83.57 -0.55 1.45 16 15 N -0.51 -9.62 4.74 -224.68 -1.07 -10.69 16 16 C 0.05 0.98 5.85 -2.84 -0.02 0.96 16 17 C -0.16 -3.10 6.11 -24.91 -0.15 -3.25 16 18 C 0.22 5.06 0.70 -89.64 -0.06 5.00 16 19 O -0.55 -12.59 8.56 -35.23 -0.30 -12.89 16 20 C -0.55 -14.73 8.88 -34.44 -0.31 -15.04 16 21 H 0.08 2.22 8.00 -52.48 -0.42 1.80 16 22 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 23 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 24 Si 0.95 23.88 24.87 -169.99 -4.23 19.66 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.33 -8.42 7.11 56.52 0.40 -8.02 16 27 H -0.27 -6.70 5.45 56.52 0.31 -6.39 16 28 C 0.06 1.17 4.46 -2.30 -0.01 1.16 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.01 7.22 -51.93 -0.38 0.64 16 31 H 0.06 0.61 7.00 -51.93 -0.36 0.24 16 32 H 0.08 0.68 7.72 -51.93 -0.40 0.28 16 33 H 0.09 0.63 7.03 -51.93 -0.36 0.26 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 39 H 0.14 2.09 6.30 -52.48 -0.33 1.76 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.03 0.57 7.04 -51.93 -0.37 0.20 16 42 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 43 H 0.07 1.31 7.99 -51.93 -0.41 0.90 16 44 H 0.37 7.36 8.99 45.56 0.41 7.77 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.06 1.15 7.46 -51.93 -0.39 0.76 16 47 H 0.08 1.83 6.56 -51.93 -0.34 1.49 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -33.64 364.49 -9.40 -43.04 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.34 Total: 6.52 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.46 Total: -8.56 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.64 Total: -44.04 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.22 Total: -22.11 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.23 Total: 19.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.64 -9.40 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.589 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds