Wall clock time and date at job start Tue Mar 31 2020 16:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47067 * 2 1 4 4 C 1.50703 * 109.47043 * 240.00173 * 2 1 3 5 5 O 1.21283 * 120.00195 * 265.06627 * 4 2 1 6 6 N 1.34779 * 119.99765 * 85.07059 * 4 2 1 7 7 C 1.46536 * 124.97826 * 354.66680 * 6 4 2 8 8 C 1.53745 * 105.19450 * 179.97438 * 7 6 4 9 9 C 1.51213 * 104.58471 * 0.02562 * 8 7 6 10 10 C 1.38185 * 130.97087 * 180.02562 * 9 8 7 11 11 C 1.38227 * 120.14857 * 179.97438 * 10 9 8 12 12 C 1.38298 * 119.82501 * 0.23044 * 11 10 9 13 13 C 1.37836 * 120.22593 * 359.50868 * 12 11 10 14 14 C 1.38556 * 108.55796 * 359.97438 * 9 8 7 15 15 N 1.46902 * 109.47082 * 120.00305 * 2 1 3 16 16 C 1.47441 * 110.99742 * 179.87641 * 15 2 1 17 17 C 1.54314 * 107.23583 * 123.25672 * 16 15 2 18 18 C 1.55146 * 103.01827 * 22.28256 * 17 16 15 19 19 O 1.42900 * 110.98893 * 82.43797 * 18 17 16 20 20 C 1.50694 * 110.98927 * 206.21660 * 18 17 16 21 21 H 1.08004 * 120.00189 * 24.65153 * 20 18 17 22 22 C 1.37875 * 119.99833 * 204.64711 * 20 18 17 23 23 N 1.31520 * 120.00234 * 173.51565 * 22 20 18 24 24 Si 1.86802 * 120.00134 * 353.51225 * 22 20 18 25 25 H 1.48505 * 109.46909 * 86.10910 * 24 22 20 26 26 H 1.48498 * 109.47231 * 206.10221 * 24 22 20 27 27 H 1.48495 * 109.47299 * 326.10729 * 24 22 20 28 28 C 1.47844 * 111.00132 * 300.71454 * 15 2 1 29 29 H 1.09007 * 109.46960 * 185.16276 * 1 2 3 30 30 H 1.09002 * 109.47293 * 305.16361 * 1 2 3 31 31 H 1.09003 * 109.47399 * 65.17031 * 1 2 3 32 32 H 1.08995 * 110.30184 * 61.05719 * 7 6 4 33 33 H 1.09000 * 110.29844 * 298.91376 * 7 6 4 34 34 H 1.08997 * 110.41231 * 241.22407 * 8 7 6 35 35 H 1.09005 * 110.41387 * 118.77858 * 8 7 6 36 36 H 1.07999 * 119.92663 * 359.95495 * 10 9 8 37 37 H 1.08000 * 120.08761 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.88668 * 179.72062 * 12 11 10 39 39 H 1.08006 * 119.85835 * 180.27676 * 13 12 11 40 40 H 1.09004 * 109.88687 * 242.66395 * 16 15 2 41 41 H 1.08999 * 109.89058 * 3.84830 * 16 15 2 42 42 H 1.09003 * 110.70989 * 140.66394 * 17 16 15 43 43 H 1.08993 * 110.70765 * 263.72665 * 17 16 15 44 44 H 0.96698 * 113.99996 * 56.24718 * 19 18 17 45 45 H 0.96994 * 119.99991 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.37345 * 332.47090 * 28 15 2 47 47 H 1.09002 * 110.37017 * 94.80264 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3196 -1.8875 -1.1764 6 7 2.1623 -0.0376 -2.3911 7 6 1.7450 1.3501 -2.6090 8 6 2.1012 1.6528 -4.0736 9 6 2.7127 0.3697 -4.5898 10 6 3.2196 0.0437 -5.8333 11 6 3.7342 -1.2182 -6.0641 12 6 3.7365 -2.1566 -5.0482 13 6 3.2369 -1.8341 -3.8047 14 6 2.7154 -0.5614 -3.5638 15 7 2.0196 -0.6926 1.1994 16 6 3.4935 -0.7148 1.2319 17 6 3.9316 -0.0574 2.5576 18 6 2.6766 -0.2132 3.4563 19 8 2.6307 -1.5119 4.0507 20 6 2.6313 0.8620 4.5112 21 1 3.1397 1.8008 4.3477 22 6 1.9408 0.6474 5.6851 23 7 2.0058 1.5308 6.6573 24 14 0.9128 -0.8982 5.8949 25 1 1.7733 -2.0011 6.3934 26 1 -0.1758 -0.6398 6.8712 27 1 0.3239 -1.2822 4.5869 28 6 1.5316 -0.0323 2.4289 29 1 -0.3633 -1.0236 0.0925 30 1 -0.3634 0.5918 0.8401 31 1 -0.3634 0.4315 -0.9327 32 1 2.2898 2.0180 -1.9418 33 1 0.6711 1.4511 -2.4522 34 1 2.8231 2.4675 -4.1288 35 1 1.2033 1.9003 -4.6399 36 1 3.2133 0.7764 -6.6267 37 1 4.1297 -1.4721 -7.0365 38 1 4.1342 -3.1443 -5.2288 39 1 3.2457 -2.5701 -3.0142 40 1 3.8498 -1.7442 1.1930 41 1 3.8916 -0.1503 0.3888 42 1 4.7818 -0.5867 2.9878 43 1 4.1715 0.9948 2.4051 44 1 3.4185 -1.7377 4.5638 45 1 1.5203 1.3796 7.4833 46 1 1.3508 1.0268 2.2447 47 1 0.6224 -0.5170 2.7846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:29 Heat of formation + Delta-G solvation = -55.744334 kcal Electronic energy + Delta-G solvation = -29125.598201 eV Core-core repulsion = 25272.609174 eV Total energy + Delta-G solvation = -3852.989027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.32060 -40.74479 -39.47483 -37.38585 -37.00440 -34.45230 -33.85539 -33.23995 -30.98493 -30.36031 -29.97009 -29.47987 -26.99020 -25.44975 -24.13943 -23.69343 -22.44891 -22.03380 -21.43178 -20.24739 -19.38261 -18.47755 -17.68703 -17.30981 -17.17790 -17.05578 -16.61877 -16.37081 -16.08212 -15.81137 -15.36506 -15.06256 -14.92124 -14.64879 -14.38626 -14.17012 -14.00266 -13.73631 -13.69658 -13.48159 -13.40323 -13.26701 -13.16533 -12.95410 -12.71952 -12.66972 -12.50065 -12.48294 -12.18087 -11.95675 -11.93379 -11.90764 -11.22496 -11.20975 -10.83445 -10.66026 -10.30081 -9.75493 -9.29238 -8.80841 -8.35580 -6.47679 0.25193 0.41209 1.47130 1.48412 1.51735 1.60973 1.74546 2.45257 2.83473 2.89228 2.97628 3.14687 3.55120 3.56918 3.67029 3.82043 3.87605 3.93553 4.11230 4.12494 4.15567 4.18903 4.23258 4.33985 4.46606 4.52787 4.56208 4.61095 4.63321 4.71107 4.73997 4.89763 4.92088 4.99486 5.04584 5.10256 5.11900 5.14000 5.28950 5.34196 5.45338 5.46397 5.50142 5.60789 5.90556 5.98011 6.07226 6.09277 6.25762 6.58618 6.91741 6.99572 7.32298 8.76953 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.002984 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.211020 B = 9381.346894 C = 9664.822983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.066 3.934 3 H 0.080 0.920 4 C 0.527 3.473 5 O -0.537 6.537 6 N -0.560 5.560 7 C 0.084 3.916 8 C -0.077 4.077 9 C -0.141 4.141 10 C -0.080 4.080 11 C -0.140 4.140 12 C -0.103 4.103 13 C -0.163 4.163 14 C 0.115 3.885 15 N -0.523 5.523 16 C 0.065 3.935 17 C -0.149 4.149 18 C 0.215 3.785 19 O -0.560 6.560 20 C -0.544 4.544 21 H 0.048 0.952 22 C 0.030 3.970 23 N -0.934 5.934 24 Si 1.004 2.996 25 H -0.286 1.286 26 H -0.336 1.336 27 H -0.266 1.266 28 C 0.067 3.933 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.378 0.622 45 H 0.267 0.733 46 H 0.063 0.937 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 1.199 -27.543 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.046 4.046 3 H 0.097 0.903 4 C 0.317 3.683 5 O -0.412 6.412 6 N -0.284 5.284 7 C -0.036 4.036 8 C -0.114 4.114 9 C -0.144 4.144 10 C -0.098 4.098 11 C -0.159 4.159 12 C -0.121 4.121 13 C -0.184 4.184 14 C 0.020 3.980 15 N -0.248 5.248 16 C -0.063 4.063 17 C -0.188 4.188 18 C 0.175 3.825 19 O -0.369 6.369 20 C -0.582 4.582 21 H 0.066 0.934 22 C -0.171 4.171 23 N -0.572 5.572 24 Si 0.839 3.161 25 H -0.213 1.213 26 H -0.269 1.269 27 H -0.192 1.192 28 C -0.060 4.060 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.175 0.825 37 H 0.173 0.827 38 H 0.157 0.843 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.227 0.773 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.269 0.111 -27.511 27.512 hybrid contribution 0.539 0.010 1.350 1.453 sum 0.270 0.121 -26.161 26.163 Atomic orbital electron populations 1.21799 0.90324 1.03229 1.04142 1.21860 0.98798 0.96007 0.87893 0.90257 1.20805 0.76989 0.86675 0.83862 1.90653 1.48859 1.17031 1.84621 1.46108 1.58115 1.15309 1.08824 1.22619 1.02622 0.79456 0.98924 1.21196 1.02795 0.94828 0.92549 1.20440 1.03914 0.96272 0.93729 1.20796 0.96461 0.97331 0.95195 1.21413 1.01193 0.93233 1.00049 1.21169 0.98352 1.00816 0.91804 1.20992 1.03030 0.95345 0.99005 1.18748 0.97452 0.94930 0.86868 1.63437 1.08797 1.51664 1.00920 1.22564 0.87305 1.00049 0.96385 1.23295 0.99199 1.00702 0.95624 1.20127 0.92026 0.80395 0.89956 1.86101 1.45018 1.36015 1.69737 1.21424 1.33838 1.01593 1.01332 0.93397 1.25783 0.96484 0.99757 0.95028 1.70071 1.42955 1.38187 1.06004 0.84777 0.76742 0.78479 0.76134 1.21301 1.26850 1.19245 1.23196 0.98586 0.96644 0.87553 0.92694 0.90336 0.89004 0.88698 0.87791 0.87042 0.86628 0.82457 0.82711 0.84274 0.87563 0.91882 0.93668 0.90357 0.91291 0.77266 0.92434 0.91923 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.95 71.98 0.64 -2.82 16 2 C 0.07 1.96 1.50 44.17 0.07 2.03 16 3 H 0.08 2.05 7.22 -2.39 -0.02 2.03 16 4 C 0.53 16.52 5.87 87.66 0.51 17.04 16 5 O -0.54 -21.19 14.27 -3.04 -0.04 -21.24 16 6 N -0.56 -13.90 3.13 -629.48 -1.97 -15.87 16 7 C 0.08 1.24 6.46 86.62 0.56 1.80 16 8 C -0.08 -0.83 6.94 30.26 0.21 -0.62 16 9 C -0.14 -2.49 6.23 -19.64 -0.12 -2.61 16 10 C -0.08 -1.11 10.04 22.25 0.22 -0.89 16 11 C -0.14 -2.09 10.06 22.28 0.22 -1.87 16 12 C -0.10 -2.08 10.02 22.19 0.22 -1.85 16 13 C -0.16 -4.46 9.46 22.51 0.21 -4.24 16 14 C 0.11 2.90 6.62 38.28 0.25 3.16 16 15 N -0.52 -19.57 4.74 -864.76 -4.10 -23.67 16 16 C 0.06 2.36 5.85 86.65 0.51 2.86 16 17 C -0.15 -5.72 6.11 31.78 0.19 -5.53 16 18 C 0.22 9.65 0.70 -10.16 -0.01 9.64 16 19 O -0.56 -25.10 8.56 -148.98 -1.28 -26.37 16 20 C -0.54 -29.20 8.88 25.60 0.23 -28.97 16 21 H 0.05 2.81 8.00 -2.91 -0.02 2.79 16 22 C 0.03 1.67 5.46 84.65 0.46 2.13 16 23 N -0.93 -56.53 13.96 21.45 0.30 -56.23 16 24 Si 1.00 49.65 24.87 68.60 1.71 51.36 16 25 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 26 H -0.34 -16.95 7.11 99.48 0.71 -16.24 16 27 H -0.27 -13.08 5.45 99.48 0.54 -12.54 16 28 C 0.07 2.77 4.46 86.77 0.39 3.16 16 29 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.08 1.95 7.22 -2.39 -0.02 1.93 16 31 H 0.09 1.66 7.00 -2.39 -0.02 1.65 16 32 H 0.09 1.21 7.72 -2.39 -0.02 1.19 16 33 H 0.10 1.13 7.03 -2.39 -0.02 1.12 16 34 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.11 3.53 6.30 -2.91 -0.02 3.51 16 40 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 41 H 0.04 1.53 7.04 -2.39 -0.02 1.51 16 42 H 0.08 2.79 8.12 -2.39 -0.02 2.77 16 43 H 0.07 2.61 7.99 -2.39 -0.02 2.59 16 44 H 0.38 14.82 8.99 -74.06 -0.67 14.15 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.06 2.47 7.46 -2.38 -0.02 2.45 16 47 H 0.07 2.92 6.56 -2.39 -0.02 2.90 16 Total: -1.00 -75.68 364.49 -0.45 -76.13 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.15 Total: 23.48 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 4.78 Total: -7.58 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -5.77 Total: -95.77 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -1.32 Total: -47.61 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 1.71 Total: 51.36 kcal Total: -75.68 -0.45 -76.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.382 kcal (2) G-P(sol) polarization free energy of solvation -75.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds