Wall clock time and date at job start Tue Mar 31 2020 16:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46880 * 2 1 4 4 C 1.50693 * 109.47583 * 120.00254 * 2 1 3 5 5 O 1.21293 * 120.00043 * 110.94219 * 4 2 1 6 6 N 1.34777 * 120.00318 * 290.94900 * 4 2 1 7 7 C 1.46536 * 124.97453 * 355.74594 * 6 4 2 8 8 C 1.53747 * 105.19749 * 180.02562 * 7 6 4 9 9 C 1.51212 * 104.57806 * 359.97438 * 8 7 6 10 10 C 1.38193 * 130.96976 * 180.34308 * 9 8 7 11 11 C 1.38223 * 120.14844 * 180.23015 * 10 9 8 12 12 C 1.38304 * 119.83022 * 359.42067 * 11 10 9 13 13 C 1.37839 * 120.22049 * 0.25755 * 12 11 10 14 14 C 1.38551 * 108.56410 * 0.02562 * 9 8 7 15 15 N 1.46902 * 109.47189 * 240.00891 * 2 1 3 16 16 C 1.47451 * 110.99460 * 306.78733 * 15 2 1 17 17 C 1.54320 * 107.22898 * 123.25945 * 16 15 2 18 18 C 1.55142 * 103.02219 * 22.28273 * 17 16 15 19 19 O 1.42902 * 110.98785 * 82.43555 * 18 17 16 20 20 C 1.50696 * 110.99022 * 206.25020 * 18 17 16 21 21 H 1.08007 * 119.99267 * 118.54464 * 20 18 17 22 22 C 1.37867 * 120.00340 * 298.54584 * 20 18 17 23 23 N 1.31510 * 120.00402 * 0.02562 * 22 20 18 24 24 Si 1.86809 * 119.99866 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46773 * 90.00404 * 24 22 20 26 26 H 1.48500 * 109.46901 * 210.00070 * 24 22 20 27 27 H 1.48500 * 109.46951 * 330.00291 * 24 22 20 28 28 C 1.47839 * 111.00193 * 67.62980 * 15 2 1 29 29 H 1.09000 * 109.47212 * 298.60550 * 1 2 3 30 30 H 1.09000 * 109.47420 * 58.60590 * 1 2 3 31 31 H 1.09002 * 109.47294 * 178.60623 * 1 2 3 32 32 H 1.08998 * 110.30238 * 61.07096 * 7 6 4 33 33 H 1.09001 * 110.29904 * 298.92746 * 7 6 4 34 34 H 1.09003 * 110.41126 * 241.22304 * 8 7 6 35 35 H 1.09000 * 110.41679 * 118.77113 * 8 7 6 36 36 H 1.08000 * 119.92409 * 359.94993 * 10 9 8 37 37 H 1.08006 * 120.08904 * 179.70064 * 11 10 9 38 38 H 1.08001 * 119.89026 * 180.27985 * 12 11 10 39 39 H 1.07988 * 119.85783 * 180.02562 * 13 12 11 40 40 H 1.08996 * 109.88592 * 242.66073 * 16 15 2 41 41 H 1.09000 * 109.88869 * 3.85772 * 16 15 2 42 42 H 1.09003 * 110.70328 * 140.66862 * 17 16 15 43 43 H 1.08998 * 110.70634 * 263.89871 * 17 16 15 44 44 H 0.96701 * 113.99835 * 61.46044 * 19 18 17 45 45 H 0.96998 * 120.00665 * 180.02562 * 23 22 20 46 46 H 1.08997 * 110.37610 * 332.46673 * 28 15 2 47 47 H 1.09001 * 110.37233 * 94.80990 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.5886 -1.7833 1.1265 6 7 1.8637 -0.1537 2.4461 7 6 1.2894 1.1721 2.6905 8 6 1.3121 1.3458 4.2180 9 6 1.9174 0.0614 4.7382 10 6 2.1817 -0.3584 6.0280 11 6 2.7539 -1.5966 6.2515 12 6 3.0508 -2.4206 5.1811 13 6 2.7829 -2.0087 3.8933 14 6 2.2111 -0.7565 3.6591 15 7 2.0197 -0.6923 -1.1996 16 6 1.4185 -2.0335 -1.3179 17 6 0.7167 -2.1004 -2.6906 18 6 1.4408 -0.9981 -3.5075 19 8 2.6697 -1.4865 -4.0493 20 6 0.5493 -0.4598 -4.5967 21 1 0.2683 0.5831 -4.5984 22 6 0.0922 -1.2985 -5.5909 23 7 0.4339 -2.5685 -5.5886 24 14 -1.0136 -0.6313 -6.9406 25 1 -0.1795 -0.1517 -8.0719 26 1 -1.9198 -1.7077 -7.4153 27 1 -1.8202 0.4958 -6.4076 28 6 1.7011 0.0759 -2.4219 29 1 -0.3634 0.4920 0.9022 30 1 -0.3634 0.5353 -0.8772 31 1 -0.3634 -1.0274 -0.0250 32 1 0.2652 1.2147 2.3200 33 1 1.8972 1.9411 2.2139 34 1 0.2995 1.4712 4.6015 35 1 1.9326 2.1982 4.4945 36 1 1.9447 0.2843 6.8630 37 1 2.9645 -1.9218 7.2597 38 1 3.4938 -3.3901 5.3549 39 1 3.0167 -2.6570 3.0619 40 1 2.1966 -2.7948 -1.2617 41 1 0.6902 -2.1850 -0.5212 42 1 0.8611 -3.0782 -3.1500 43 1 -0.3447 -1.8726 -2.5922 44 1 2.5626 -2.2267 -4.6622 45 1 0.1127 -3.1585 -6.2882 46 1 0.8090 0.6827 -2.2670 47 1 2.5447 0.7052 -2.7052 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:34 Heat of formation + Delta-G solvation = -28.895296 kcal Electronic energy + Delta-G solvation = -29045.046209 eV Core-core repulsion = 25193.221444 eV Total energy + Delta-G solvation = -3851.824766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32532 -39.42463 -37.86632 -36.45329 -35.01124 -32.53215 -32.13475 -31.66422 -29.79286 -29.20102 -28.26809 -27.86673 -25.21351 -24.30506 -23.35887 -22.61450 -21.49401 -20.47676 -19.51644 -18.93216 -17.19632 -17.03231 -16.51326 -16.27676 -15.90795 -15.24861 -15.10682 -14.87908 -14.78369 -14.37228 -14.08433 -13.81613 -13.67898 -13.07021 -12.98291 -12.85137 -12.77214 -12.52479 -12.40673 -12.07854 -11.99186 -11.82237 -11.57873 -11.45768 -11.23396 -11.15268 -11.04866 -10.84922 -10.72901 -10.42519 -10.32553 -10.26012 -9.82668 -9.54596 -9.18276 -8.93730 -8.59513 -8.05350 -7.88808 -7.60776 -6.20621 -4.29492 1.15415 1.26183 2.63281 2.68262 3.21414 3.28775 3.30668 3.67772 4.07757 4.26609 4.28768 4.55674 4.56385 4.75876 4.84916 4.96899 5.03216 5.06836 5.11438 5.17499 5.23986 5.31997 5.47152 5.49758 5.54953 5.65445 5.72365 5.76978 5.86922 5.91187 6.09784 6.17571 6.19229 6.29252 6.30758 6.33159 6.45047 6.57702 6.69123 6.92673 6.93008 7.10633 7.25200 7.42352 7.51011 7.63191 7.66448 7.82533 8.11735 8.17318 8.72555 9.39365 9.54264 10.86182 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.002762 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.388795 B =10135.784670 C =10654.451903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.065 3.935 3 H 0.101 0.899 4 C 0.531 3.469 5 O -0.490 6.490 6 N -0.560 5.560 7 C 0.095 3.905 8 C -0.084 4.084 9 C -0.146 4.146 10 C -0.080 4.080 11 C -0.149 4.149 12 C -0.093 4.093 13 C -0.134 4.134 14 C 0.156 3.844 15 N -0.506 5.506 16 C 0.052 3.948 17 C -0.145 4.145 18 C 0.254 3.746 19 O -0.578 6.578 20 C -0.536 4.536 21 H 0.060 0.940 22 C 0.072 3.928 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.278 1.278 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.057 3.943 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.140 0.860 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.377 0.623 45 H 0.266 0.734 46 H 0.052 0.948 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 6.431 21.498 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.048 4.048 3 H 0.119 0.881 4 C 0.321 3.679 5 O -0.361 6.361 6 N -0.285 5.285 7 C -0.027 4.027 8 C -0.121 4.121 9 C -0.149 4.149 10 C -0.099 4.099 11 C -0.168 4.168 12 C -0.112 4.112 13 C -0.155 4.155 14 C 0.060 3.940 15 N -0.230 5.230 16 C -0.075 4.075 17 C -0.184 4.184 18 C 0.213 3.787 19 O -0.386 6.386 20 C -0.575 4.575 21 H 0.079 0.921 22 C -0.131 4.131 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.204 1.204 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.070 4.070 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.226 0.774 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.626 6.097 21.546 22.401 hybrid contribution -1.810 -0.028 -1.150 2.145 sum -1.183 6.069 20.396 21.312 Atomic orbital electron populations 1.22565 0.95180 1.03940 1.03071 1.21700 0.94245 0.98653 0.90159 0.88090 1.20817 0.78437 0.85822 0.82865 1.90677 1.39130 1.21169 1.85137 1.46058 1.60111 1.17906 1.04421 1.22291 0.99933 0.83816 0.96624 1.21082 1.01958 0.95920 0.93142 1.20009 1.05137 0.96735 0.92990 1.20320 0.98672 0.96285 0.94617 1.20984 1.02130 0.94730 0.98953 1.20946 0.98840 0.99614 0.91782 1.21027 1.01250 0.94951 0.98259 1.18438 0.96698 0.93811 0.85026 1.63635 1.56100 1.02959 1.00275 1.22831 0.96904 0.90368 0.97428 1.23305 0.98586 1.02785 0.93758 1.19499 0.82051 0.88049 0.89081 1.86150 1.32567 1.54883 1.65016 1.21512 1.29966 0.96128 1.09873 0.92147 1.24998 0.95683 0.94713 0.97685 1.69742 1.45501 1.03912 1.34015 0.86493 0.80311 0.78613 0.81948 1.20439 1.21144 1.19881 1.23092 0.99004 0.96714 0.88168 0.92110 0.90080 0.91094 0.89427 0.89720 0.89221 0.89185 0.85980 0.85856 0.85619 0.84259 0.91201 0.94315 0.90461 0.92760 0.77390 0.92367 0.92950 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 8.53 37.16 0.32 -2.30 16 2 C 0.07 1.03 2.06 -68.87 -0.14 0.88 16 3 H 0.10 1.38 7.91 -51.92 -0.41 0.97 16 4 C 0.53 8.71 6.73 -10.99 -0.07 8.64 16 5 O -0.49 -9.73 13.20 5.55 0.07 -9.66 16 6 N -0.56 -7.46 3.13 -112.90 -0.35 -7.81 16 7 C 0.10 0.85 6.33 -3.63 -0.02 0.83 16 8 C -0.08 -0.63 6.94 -27.24 -0.19 -0.82 16 9 C -0.15 -1.54 6.23 -104.27 -0.65 -2.19 16 10 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 11 C -0.15 -1.39 10.06 -39.56 -0.40 -1.79 16 12 C -0.09 -1.02 10.02 -39.70 -0.40 -1.42 16 13 C -0.13 -1.85 9.46 -39.21 -0.37 -2.22 16 14 C 0.16 2.10 6.62 -83.57 -0.55 1.54 16 15 N -0.51 -10.15 4.95 -224.68 -1.11 -11.26 16 16 C 0.05 1.10 4.75 -2.83 -0.01 1.08 16 17 C -0.15 -3.40 5.37 -24.91 -0.13 -3.53 16 18 C 0.25 6.29 0.87 -89.63 -0.08 6.22 16 19 O -0.58 -15.44 13.16 -35.23 -0.46 -15.90 16 20 C -0.54 -14.16 8.27 -34.45 -0.28 -14.44 16 21 H 0.06 1.57 7.79 -52.48 -0.41 1.16 16 22 C 0.07 1.89 5.29 -17.83 -0.09 1.80 16 23 N -0.89 -23.87 10.75 55.43 0.60 -23.28 16 24 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 C 0.06 1.21 5.66 -2.30 -0.01 1.20 16 29 H 0.06 0.65 5.50 -51.93 -0.29 0.36 16 30 H 0.08 1.16 6.43 -51.93 -0.33 0.83 16 31 H 0.07 1.10 5.92 -51.93 -0.31 0.79 16 32 H 0.09 0.66 5.80 -51.93 -0.30 0.36 16 33 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.14 2.20 6.29 -52.49 -0.33 1.87 16 40 H 0.07 1.60 8.11 -51.93 -0.42 1.18 16 41 H 0.04 0.77 5.15 -51.93 -0.27 0.50 16 42 H 0.08 1.95 7.54 -51.93 -0.39 1.56 16 43 H 0.05 1.27 8.03 -51.93 -0.42 0.86 16 44 H 0.38 10.12 7.57 45.56 0.34 10.47 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 46 H 0.05 1.03 5.93 -51.93 -0.31 0.72 16 47 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -31.05 362.26 -10.25 -41.30 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -5.93 Total: 13.38 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.49 Total: -7.67 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -0.87 Total: -42.35 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.39 Total: -25.56 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.05 -10.25 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.404 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds