Wall clock time and date at job start Tue Mar 31 2020 16:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46880 * 2 1 4 4 C 1.50693 * 109.47583 * 120.00254 * 2 1 3 5 5 O 1.21293 * 120.00043 * 110.94219 * 4 2 1 6 6 N 1.34777 * 120.00318 * 290.94900 * 4 2 1 7 7 C 1.46536 * 124.97453 * 355.74594 * 6 4 2 8 8 C 1.53747 * 105.19749 * 180.02562 * 7 6 4 9 9 C 1.51212 * 104.57806 * 359.97438 * 8 7 6 10 10 C 1.38193 * 130.96976 * 180.34308 * 9 8 7 11 11 C 1.38223 * 120.14844 * 180.23015 * 10 9 8 12 12 C 1.38304 * 119.83022 * 359.42067 * 11 10 9 13 13 C 1.37839 * 120.22049 * 0.25755 * 12 11 10 14 14 C 1.38551 * 108.56410 * 0.02562 * 9 8 7 15 15 N 1.46902 * 109.47189 * 240.00891 * 2 1 3 16 16 C 1.47451 * 110.99460 * 306.78733 * 15 2 1 17 17 C 1.54320 * 107.22898 * 123.25945 * 16 15 2 18 18 C 1.55142 * 103.02219 * 22.28273 * 17 16 15 19 19 O 1.42902 * 110.98785 * 82.43555 * 18 17 16 20 20 C 1.50696 * 110.99022 * 206.25020 * 18 17 16 21 21 H 1.08007 * 119.99267 * 118.54464 * 20 18 17 22 22 C 1.37867 * 120.00340 * 298.54584 * 20 18 17 23 23 N 1.31510 * 120.00402 * 0.02562 * 22 20 18 24 24 Si 1.86809 * 119.99866 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46773 * 90.00404 * 24 22 20 26 26 H 1.48500 * 109.46901 * 210.00070 * 24 22 20 27 27 H 1.48500 * 109.46951 * 330.00291 * 24 22 20 28 28 C 1.47839 * 111.00193 * 67.62980 * 15 2 1 29 29 H 1.09000 * 109.47212 * 298.60550 * 1 2 3 30 30 H 1.09000 * 109.47420 * 58.60590 * 1 2 3 31 31 H 1.09002 * 109.47294 * 178.60623 * 1 2 3 32 32 H 1.08998 * 110.30238 * 61.07096 * 7 6 4 33 33 H 1.09001 * 110.29904 * 298.92746 * 7 6 4 34 34 H 1.09003 * 110.41126 * 241.22304 * 8 7 6 35 35 H 1.09000 * 110.41679 * 118.77113 * 8 7 6 36 36 H 1.08000 * 119.92409 * 359.94993 * 10 9 8 37 37 H 1.08006 * 120.08904 * 179.70064 * 11 10 9 38 38 H 1.08001 * 119.89026 * 180.27985 * 12 11 10 39 39 H 1.07988 * 119.85783 * 180.02562 * 13 12 11 40 40 H 1.08996 * 109.88592 * 242.66073 * 16 15 2 41 41 H 1.09000 * 109.88869 * 3.85772 * 16 15 2 42 42 H 1.09003 * 110.70328 * 140.66862 * 17 16 15 43 43 H 1.08998 * 110.70634 * 263.89871 * 17 16 15 44 44 H 0.96701 * 113.99835 * 61.46044 * 19 18 17 45 45 H 0.96998 * 120.00665 * 180.02562 * 23 22 20 46 46 H 1.08997 * 110.37610 * 332.46673 * 28 15 2 47 47 H 1.09001 * 110.37233 * 94.80990 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.5886 -1.7833 1.1265 6 7 1.8637 -0.1537 2.4461 7 6 1.2894 1.1721 2.6905 8 6 1.3121 1.3458 4.2180 9 6 1.9174 0.0614 4.7382 10 6 2.1817 -0.3584 6.0280 11 6 2.7539 -1.5966 6.2515 12 6 3.0508 -2.4206 5.1811 13 6 2.7829 -2.0087 3.8933 14 6 2.2111 -0.7565 3.6591 15 7 2.0197 -0.6923 -1.1996 16 6 1.4185 -2.0335 -1.3179 17 6 0.7167 -2.1004 -2.6906 18 6 1.4408 -0.9981 -3.5075 19 8 2.6697 -1.4865 -4.0493 20 6 0.5493 -0.4598 -4.5967 21 1 0.2683 0.5831 -4.5984 22 6 0.0922 -1.2985 -5.5909 23 7 0.4339 -2.5685 -5.5886 24 14 -1.0136 -0.6313 -6.9406 25 1 -0.1795 -0.1517 -8.0719 26 1 -1.9198 -1.7077 -7.4153 27 1 -1.8202 0.4958 -6.4076 28 6 1.7011 0.0759 -2.4219 29 1 -0.3634 0.4920 0.9022 30 1 -0.3634 0.5353 -0.8772 31 1 -0.3634 -1.0274 -0.0250 32 1 0.2652 1.2147 2.3200 33 1 1.8972 1.9411 2.2139 34 1 0.2995 1.4712 4.6015 35 1 1.9326 2.1982 4.4945 36 1 1.9447 0.2843 6.8630 37 1 2.9645 -1.9218 7.2597 38 1 3.4938 -3.3901 5.3549 39 1 3.0167 -2.6570 3.0619 40 1 2.1966 -2.7948 -1.2617 41 1 0.6902 -2.1850 -0.5212 42 1 0.8611 -3.0782 -3.1500 43 1 -0.3447 -1.8726 -2.5922 44 1 2.5626 -2.2267 -4.6622 45 1 0.1127 -3.1585 -6.2882 46 1 0.8090 0.6827 -2.2670 47 1 2.5447 0.7052 -2.7052 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:33 Heat of formation + Delta-G solvation = -50.455473 kcal Electronic energy + Delta-G solvation = -29045.981129 eV Core-core repulsion = 25193.221444 eV Total energy + Delta-G solvation = -3852.759685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31653 -40.74286 -39.29043 -37.36939 -36.78205 -34.18302 -33.54181 -32.99664 -30.84260 -30.03449 -29.93693 -29.48236 -26.76161 -25.74109 -24.09801 -23.80642 -22.37673 -21.95527 -21.27598 -20.14849 -19.04408 -18.25964 -17.51921 -17.14857 -16.94784 -16.88859 -16.70224 -16.50305 -15.86773 -15.74947 -15.39703 -15.11156 -14.69221 -14.43383 -14.42808 -13.90056 -13.81573 -13.70538 -13.49454 -13.45783 -13.29810 -13.10030 -12.99579 -12.87820 -12.68585 -12.57930 -12.39572 -12.27455 -12.23765 -12.18838 -11.88402 -11.74034 -11.16251 -11.13372 -10.78544 -10.58534 -10.07495 -9.73871 -9.19399 -8.77307 -8.20094 -6.36816 0.28062 0.42672 1.41597 1.43589 1.52619 1.55295 1.64529 2.38715 2.85634 3.00604 3.06727 3.21785 3.60665 3.70944 3.89814 3.93465 3.95749 4.07880 4.13206 4.13893 4.18045 4.26510 4.34788 4.41076 4.48263 4.52747 4.62747 4.66617 4.70744 4.75430 4.90356 4.94590 5.03686 5.09428 5.13309 5.16027 5.25820 5.33022 5.46411 5.48373 5.51849 5.53051 5.62366 5.78873 5.91947 6.06088 6.12637 6.20519 6.31452 6.69936 6.97018 7.34691 7.43946 8.85374 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.002762 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.388795 B =10135.784670 C =10654.451903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 H 0.129 0.871 4 C 0.526 3.474 5 O -0.543 6.543 6 N -0.558 5.558 7 C 0.082 3.918 8 C -0.077 4.077 9 C -0.140 4.140 10 C -0.079 4.079 11 C -0.141 4.141 12 C -0.104 4.104 13 C -0.166 4.166 14 C 0.116 3.884 15 N -0.522 5.522 16 C 0.071 3.929 17 C -0.132 4.132 18 C 0.234 3.766 19 O -0.591 6.591 20 C -0.555 4.555 21 H 0.063 0.937 22 C 0.027 3.973 23 N -0.914 5.914 24 Si 0.962 3.038 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.265 1.265 28 C 0.068 3.932 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.371 0.629 45 H 0.267 0.733 46 H 0.073 0.927 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 9.582 24.190 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.047 4.047 3 H 0.147 0.853 4 C 0.316 3.684 5 O -0.418 6.418 6 N -0.282 5.282 7 C -0.038 4.038 8 C -0.113 4.113 9 C -0.143 4.143 10 C -0.097 4.097 11 C -0.160 4.160 12 C -0.122 4.122 13 C -0.187 4.187 14 C 0.021 3.979 15 N -0.246 5.246 16 C -0.057 4.057 17 C -0.172 4.172 18 C 0.195 3.805 19 O -0.398 6.398 20 C -0.594 4.594 21 H 0.081 0.919 22 C -0.173 4.173 23 N -0.553 5.553 24 Si 0.788 3.212 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.189 1.189 28 C -0.059 4.059 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.177 0.823 37 H 0.173 0.827 38 H 0.155 0.845 39 H 0.121 0.879 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.219 0.781 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.958 9.295 24.292 26.027 hybrid contribution -1.270 -1.018 -1.838 2.455 sum -2.228 8.277 22.454 24.035 Atomic orbital electron populations 1.22485 0.93355 1.03045 1.04947 1.21828 0.95645 0.99195 0.87997 0.85323 1.20908 0.78136 0.85326 0.84074 1.90667 1.41723 1.23363 1.86050 1.46052 1.59414 1.19227 1.03458 1.22723 1.00908 0.81868 0.98307 1.21209 1.03604 0.94904 0.91618 1.20458 1.03916 0.97371 0.92594 1.20800 0.97301 0.96470 0.95152 1.21404 1.00471 0.94426 0.99684 1.21155 0.99092 1.00704 0.91280 1.20999 1.03500 0.95671 0.98531 1.18756 0.98626 0.94487 0.86025 1.63438 1.57064 1.02521 1.01543 1.22512 0.95922 0.90853 0.96397 1.23095 0.98387 1.01007 0.94688 1.19818 0.81487 0.89356 0.89885 1.86147 1.34007 1.54672 1.65003 1.21788 1.30486 0.96342 1.10739 0.91914 1.25754 0.96932 0.94938 0.99724 1.69858 1.46117 1.04815 1.34539 0.85500 0.78535 0.78141 0.79073 1.20426 1.20995 1.18887 1.22948 0.99672 0.95725 0.87530 0.88300 0.90137 0.93198 0.87737 0.88033 0.86701 0.86808 0.82332 0.82731 0.84491 0.87872 0.94025 0.93154 0.93159 0.93064 0.78129 0.92370 0.90901 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.64 8.53 71.98 0.61 -4.03 16 2 C 0.07 2.00 2.06 44.17 0.09 2.09 16 3 H 0.13 3.19 7.91 -2.38 -0.02 3.17 16 4 C 0.53 17.45 6.73 87.65 0.59 18.04 16 5 O -0.54 -23.02 13.20 -3.07 -0.04 -23.06 16 6 N -0.56 -14.31 3.13 -629.48 -1.97 -16.28 16 7 C 0.08 1.18 6.33 86.62 0.55 1.73 16 8 C -0.08 -0.81 6.94 30.26 0.21 -0.60 16 9 C -0.14 -2.55 6.23 -19.64 -0.12 -2.67 16 10 C -0.08 -1.15 10.04 22.26 0.22 -0.93 16 11 C -0.14 -2.25 10.06 22.28 0.22 -2.03 16 12 C -0.10 -2.26 10.02 22.19 0.22 -2.04 16 13 C -0.17 -4.85 9.46 22.51 0.21 -4.64 16 14 C 0.12 3.07 6.62 38.28 0.25 3.32 16 15 N -0.52 -21.24 4.95 -864.74 -4.28 -25.51 16 16 C 0.07 3.13 4.75 86.65 0.41 3.55 16 17 C -0.13 -6.46 5.37 31.78 0.17 -6.29 16 18 C 0.23 11.90 0.87 -10.15 -0.01 11.89 16 19 O -0.59 -32.79 13.16 -148.98 -1.96 -34.75 16 20 C -0.56 -29.48 8.27 25.60 0.21 -29.27 16 21 H 0.06 3.22 7.79 -2.91 -0.02 3.20 16 22 C 0.03 1.43 5.29 84.65 0.45 1.88 16 23 N -0.91 -50.02 10.75 21.44 0.23 -49.79 16 24 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 28 C 0.07 2.89 5.66 86.78 0.49 3.38 16 29 H 0.10 1.76 5.50 -2.39 -0.01 1.75 16 30 H 0.08 2.11 6.43 -2.39 -0.02 2.09 16 31 H 0.05 1.51 5.92 -2.39 -0.01 1.49 16 32 H 0.10 1.12 5.80 -2.39 -0.01 1.10 16 33 H 0.10 1.12 8.13 -2.39 -0.02 1.11 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.10 3.69 6.29 -2.92 -0.02 3.67 16 40 H 0.04 2.05 8.11 -2.39 -0.02 2.03 16 41 H 0.05 2.09 5.15 -2.39 -0.01 2.08 16 42 H 0.05 2.68 7.54 -2.39 -0.02 2.66 16 43 H 0.05 2.47 8.03 -2.39 -0.02 2.45 16 44 H 0.37 20.94 7.57 -74.06 -0.56 20.38 16 45 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 46 H 0.07 2.76 5.93 -2.39 -0.01 2.75 16 47 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -72.10 362.26 -0.76 -72.85 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.44 Total: 39.26 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 4.79 Total: -6.62 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -6.02 Total: -91.59 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -2.00 Total: -57.81 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -72.10 -0.76 -72.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.396 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds