Wall clock time and date at job start Tue Mar 31 2020 17:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47474 * 2 1 4 4 C 1.46507 * 119.99801 * 270.00341 * 3 2 1 5 5 C 1.50694 * 109.46744 * 269.99617 * 4 3 2 6 6 H 1.08008 * 120.00596 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99794 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99842 * 180.02562 * 7 5 4 9 9 Si 1.86791 * 120.00070 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46994 * 90.00737 * 9 7 5 11 11 H 1.48501 * 109.47240 * 209.99983 * 9 7 5 12 12 H 1.48497 * 109.47408 * 330.00700 * 9 7 5 13 13 C 1.34781 * 120.00190 * 89.99496 * 3 2 1 14 14 O 1.21666 * 120.00124 * 179.97438 * 13 3 2 15 15 C 1.46891 * 119.99587 * 0.02562 * 13 3 2 16 16 C 1.36396 * 126.76328 * 89.97230 * 15 13 3 17 17 C 1.50694 * 125.10885 * 0.02562 * 16 15 13 18 18 N 1.35433 * 109.77700 * 180.02562 * 16 15 13 19 19 C 1.46503 * 124.79178 * 180.02562 * 18 16 15 20 20 C 1.38127 * 110.41051 * 0.02562 * 18 16 15 21 21 C 1.39123 * 133.11742 * 179.97438 * 20 18 16 22 22 C 1.37717 * 120.00401 * 179.97438 * 21 20 18 23 23 C 1.39195 * 120.58205 * 0.03398 * 22 21 20 24 24 O 1.35972 * 119.90881 * 180.25831 * 23 22 21 25 25 C 1.42901 * 116.99838 * 359.72687 * 24 23 22 26 26 C 1.38205 * 120.17926 * 359.97438 * 23 22 21 27 27 C 1.39278 * 119.62617 * 0.02562 * 26 23 22 28 28 H 1.09005 * 109.47220 * 300.00171 * 1 2 3 29 29 H 1.09006 * 109.47055 * 59.99608 * 1 2 3 30 30 H 1.08997 * 109.47630 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46957 * 239.99560 * 2 1 3 32 32 H 1.08997 * 109.46870 * 120.00269 * 2 1 3 33 33 H 1.08995 * 109.47124 * 29.99337 * 4 3 2 34 34 H 1.09000 * 109.46779 * 150.00213 * 4 3 2 35 35 H 0.96999 * 119.99968 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47583 * 90.00421 * 17 16 15 37 37 H 1.09003 * 109.47104 * 210.00355 * 17 16 15 38 38 H 1.09000 * 109.47483 * 329.99796 * 17 16 15 39 39 H 1.09006 * 109.46656 * 90.00620 * 19 18 16 40 40 H 1.09006 * 109.46955 * 209.99975 * 19 18 16 41 41 H 1.08997 * 109.47582 * 330.00274 * 19 18 16 42 42 H 1.07991 * 119.99933 * 0.02562 * 21 20 18 43 43 H 1.07997 * 119.71143 * 180.02562 * 22 21 20 44 44 H 1.08989 * 109.47353 * 60.00237 * 25 24 23 45 45 H 1.09008 * 109.46911 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.46948 * 299.99362 * 25 24 23 47 47 H 1.08005 * 120.18300 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1494 2.3903 -2.8775 8 7 5.3913 2.1832 -3.2574 9 14 3.0131 3.4358 -3.9287 10 1 3.1159 4.8559 -3.5070 11 1 3.4067 3.3135 -5.3554 12 1 1.6135 2.9692 -3.7596 13 6 2.2430 2.0166 1.1672 14 8 2.6490 3.1635 1.1672 15 6 1.9985 1.3239 2.4393 16 6 2.8928 0.5747 3.1458 17 6 4.3212 0.3187 2.7395 18 7 2.3041 0.0954 4.2674 19 6 2.9673 -0.7492 5.2640 20 6 0.9902 0.5154 4.3389 21 6 -0.0260 0.3058 5.2656 22 6 -1.2674 0.8676 5.0653 23 6 -1.5188 1.6466 3.9395 24 8 -2.7480 2.1990 3.7580 25 6 -3.7329 1.9330 4.7587 26 6 -0.5209 1.8649 3.0087 27 6 0.7375 1.3007 3.2032 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 5.7174 2.5736 -4.0833 36 1 4.9623 1.0958 3.1558 37 1 4.6375 -0.6538 3.1167 38 1 4.3971 0.3288 1.6522 39 1 3.4278 -0.1195 6.0253 40 1 2.2326 -1.4053 5.7309 41 1 3.7346 -1.3512 4.7774 42 1 0.1588 -0.2967 6.1426 43 1 -2.0527 0.7021 5.7880 44 1 -3.3832 2.3066 5.7210 45 1 -4.6652 2.4311 4.4923 46 1 -3.9018 0.8583 4.8256 47 1 -0.7161 2.4690 2.1349 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592754167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:26 Heat of formation + Delta-G solvation = -4.366264 kcal Electronic energy + Delta-G solvation = -29137.957778 eV Core-core repulsion = 25287.196671 eV Total energy + Delta-G solvation = -3850.761107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57027 -39.44579 -38.56677 -36.12732 -35.14416 -33.14962 -32.45992 -30.94409 -30.39036 -30.14359 -28.01816 -27.46670 -26.76902 -25.97886 -22.93554 -22.77610 -22.12294 -21.29544 -20.08473 -18.43539 -17.68202 -17.06373 -16.78437 -16.18048 -15.98378 -15.69788 -15.41330 -15.32106 -15.21109 -14.30140 -13.99136 -13.73617 -13.47125 -13.32078 -13.14257 -13.07938 -12.94830 -12.83260 -12.64298 -12.42190 -12.34905 -12.23639 -12.00505 -11.77950 -11.74896 -11.50529 -11.33695 -10.83861 -10.75396 -10.58357 -10.47184 -10.36065 -10.08282 -9.50812 -9.44147 -8.99371 -8.52334 -7.87711 -7.58259 -7.37149 -6.03085 -4.00723 1.02347 1.59786 2.53134 2.66902 3.24340 3.35286 3.41263 3.43625 3.44564 3.81980 4.08307 4.46207 4.53319 4.59767 4.70452 4.78972 4.92985 4.96623 4.99551 5.13338 5.16524 5.20235 5.29392 5.30894 5.40290 5.49828 5.54854 5.59195 5.65952 5.76460 5.79437 5.92866 5.98489 6.10968 6.20316 6.24888 6.31137 6.32579 6.57320 6.61889 6.71865 6.84950 7.06204 7.08863 7.24564 7.43594 7.50122 7.68958 8.40721 8.53985 8.99178 9.14297 9.58526 11.10289 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.003972 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.323784 B = 7047.882740 C = 8428.772128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 N -0.584 5.584 4 C 0.215 3.785 5 C -0.524 4.524 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.586 3.414 14 O -0.536 6.536 15 C -0.207 4.207 16 C 0.131 3.869 17 C -0.101 4.101 18 N -0.476 5.476 19 C 0.077 3.923 20 C 0.063 3.937 21 C -0.086 4.086 22 C -0.184 4.184 23 C 0.101 3.899 24 O -0.318 6.318 25 C 0.030 3.970 26 C -0.106 4.106 27 C -0.030 4.030 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.129 0.871 44 H 0.052 0.948 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.006 -9.436 19.793 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 N -0.315 5.315 4 C 0.094 3.906 5 C -0.563 4.563 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.190 1.190 13 C 0.372 3.628 14 O -0.413 6.413 15 C -0.217 4.217 16 C 0.021 3.979 17 C -0.158 4.158 18 N -0.160 5.160 19 C -0.065 4.065 20 C -0.041 4.041 21 C -0.107 4.107 22 C -0.204 4.204 23 C 0.055 3.945 24 O -0.232 6.232 25 C -0.065 4.065 26 C -0.126 4.126 27 C -0.035 4.035 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.071 0.929 45 H 0.114 0.886 46 H 0.071 0.929 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.563 -8.866 19.688 24.981 hybrid contribution -0.535 0.304 -0.270 0.672 sum -13.098 -8.561 19.418 24.938 Atomic orbital electron populations 1.22262 0.96846 1.01346 1.02487 1.21325 0.93484 0.83746 1.02455 1.47893 1.63553 1.13424 1.06595 1.19662 0.97281 0.93449 0.80158 1.21329 0.95298 1.32637 1.07004 0.90736 1.24837 0.94970 0.95819 0.97360 1.69896 1.15146 1.45203 1.23595 0.86870 0.81622 0.81691 0.79672 1.19904 1.21175 1.18993 1.17152 0.77707 0.85582 0.82385 1.90772 1.45573 1.17768 1.87211 1.19867 0.93276 1.09114 0.99463 1.20320 0.95360 0.95809 0.86407 1.20632 0.88678 1.02128 1.04362 1.43344 1.08738 1.44029 1.19880 1.21950 0.98592 0.94481 0.91463 1.18041 0.85250 1.02325 0.98437 1.19689 0.91006 1.01916 0.98062 1.20804 0.97687 1.03040 0.98856 1.18545 0.85182 0.95956 0.94783 1.86092 1.19039 1.70360 1.47686 1.22983 0.90961 1.01160 0.91423 1.19563 0.89931 1.03109 0.99971 1.18415 0.92370 0.98582 0.94128 0.92249 0.92515 0.92489 0.90173 0.91604 0.95200 0.94582 0.92662 0.89717 0.91092 0.88581 0.91208 0.90125 0.89645 0.86110 0.85304 0.92950 0.88564 0.92939 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.11 2.00 5.95 -4.04 -0.02 1.97 16 3 N -0.58 -12.77 2.46 -176.53 -0.43 -13.20 16 4 C 0.22 5.43 4.23 -5.19 -0.02 5.41 16 5 C -0.52 -15.14 9.94 -34.44 -0.34 -15.49 16 6 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 9 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 13 C 0.59 13.17 7.02 -12.76 -0.09 13.08 16 14 O -0.54 -14.39 16.69 5.22 0.09 -14.30 16 15 C -0.21 -3.80 4.28 -103.31 -0.44 -4.24 16 16 C 0.13 2.00 6.51 -81.67 -0.53 1.47 16 17 C -0.10 -1.36 9.82 36.00 0.35 -1.01 16 18 N -0.48 -5.97 3.15 -116.94 -0.37 -6.34 16 19 C 0.08 0.58 10.76 59.85 0.64 1.22 16 20 C 0.06 0.87 6.79 -83.90 -0.57 0.30 16 21 C -0.09 -0.96 9.91 -39.44 -0.39 -1.35 16 22 C -0.18 -2.04 9.01 -39.42 -0.36 -2.40 16 23 C 0.10 1.37 6.68 -39.24 -0.26 1.11 16 24 O -0.32 -4.04 10.49 -19.65 -0.21 -4.24 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 C -0.11 -1.71 8.60 -39.21 -0.34 -2.04 16 27 C -0.03 -0.50 5.79 -104.96 -0.61 -1.10 16 28 H 0.06 0.94 5.96 -51.93 -0.31 0.63 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.07 1.07 6.62 -51.93 -0.34 0.72 16 33 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 34 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.70 6.86 -51.93 -0.36 0.34 16 38 H 0.10 1.56 7.85 -51.93 -0.41 1.15 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.46 8.03 -51.93 -0.42 0.04 16 41 H 0.08 0.53 6.82 -51.93 -0.35 0.17 16 42 H 0.12 0.97 8.01 -52.49 -0.42 0.55 16 43 H 0.13 1.04 6.26 -52.49 -0.33 0.71 16 44 H 0.05 0.35 7.64 -51.94 -0.40 -0.05 16 45 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 46 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 47 H 0.13 2.22 8.05 -52.48 -0.42 1.79 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -36.64 384.63 -7.72 -44.36 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.00 Total: -0.29 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.70 Total: -2.05 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.03 Total: -46.57 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.12 Total: -18.55 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.64 -7.72 -44.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592754167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.994 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds