Wall clock time and date at job start Tue Mar 31 2020 17:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47474 * 2 1 4 4 C 1.46507 * 119.99801 * 270.00341 * 3 2 1 5 5 C 1.50694 * 109.46744 * 269.99617 * 4 3 2 6 6 H 1.08008 * 120.00596 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99794 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99842 * 180.02562 * 7 5 4 9 9 Si 1.86791 * 120.00070 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46994 * 90.00737 * 9 7 5 11 11 H 1.48501 * 109.47240 * 209.99983 * 9 7 5 12 12 H 1.48497 * 109.47408 * 330.00700 * 9 7 5 13 13 C 1.34781 * 120.00190 * 89.99496 * 3 2 1 14 14 O 1.21666 * 120.00124 * 179.97438 * 13 3 2 15 15 C 1.46891 * 119.99587 * 0.02562 * 13 3 2 16 16 C 1.36396 * 126.76328 * 89.97230 * 15 13 3 17 17 C 1.50694 * 125.10885 * 0.02562 * 16 15 13 18 18 N 1.35433 * 109.77700 * 180.02562 * 16 15 13 19 19 C 1.46503 * 124.79178 * 180.02562 * 18 16 15 20 20 C 1.38127 * 110.41051 * 0.02562 * 18 16 15 21 21 C 1.39123 * 133.11742 * 179.97438 * 20 18 16 22 22 C 1.37717 * 120.00401 * 179.97438 * 21 20 18 23 23 C 1.39195 * 120.58205 * 0.03398 * 22 21 20 24 24 O 1.35972 * 119.90881 * 180.25831 * 23 22 21 25 25 C 1.42901 * 116.99838 * 359.72687 * 24 23 22 26 26 C 1.38205 * 120.17926 * 359.97438 * 23 22 21 27 27 C 1.39278 * 119.62617 * 0.02562 * 26 23 22 28 28 H 1.09005 * 109.47220 * 300.00171 * 1 2 3 29 29 H 1.09006 * 109.47055 * 59.99608 * 1 2 3 30 30 H 1.08997 * 109.47630 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46957 * 239.99560 * 2 1 3 32 32 H 1.08997 * 109.46870 * 120.00269 * 2 1 3 33 33 H 1.08995 * 109.47124 * 29.99337 * 4 3 2 34 34 H 1.09000 * 109.46779 * 150.00213 * 4 3 2 35 35 H 0.96999 * 119.99968 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47583 * 90.00421 * 17 16 15 37 37 H 1.09003 * 109.47104 * 210.00355 * 17 16 15 38 38 H 1.09000 * 109.47483 * 329.99796 * 17 16 15 39 39 H 1.09006 * 109.46656 * 90.00620 * 19 18 16 40 40 H 1.09006 * 109.46955 * 209.99975 * 19 18 16 41 41 H 1.08997 * 109.47582 * 330.00274 * 19 18 16 42 42 H 1.07991 * 119.99933 * 0.02562 * 21 20 18 43 43 H 1.07997 * 119.71143 * 180.02562 * 22 21 20 44 44 H 1.08989 * 109.47353 * 60.00237 * 25 24 23 45 45 H 1.09008 * 109.46911 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.46948 * 299.99362 * 25 24 23 47 47 H 1.08005 * 120.18300 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1494 2.3903 -2.8775 8 7 5.3913 2.1832 -3.2574 9 14 3.0131 3.4358 -3.9287 10 1 3.1159 4.8559 -3.5070 11 1 3.4067 3.3135 -5.3554 12 1 1.6135 2.9692 -3.7596 13 6 2.2430 2.0166 1.1672 14 8 2.6490 3.1635 1.1672 15 6 1.9985 1.3239 2.4393 16 6 2.8928 0.5747 3.1458 17 6 4.3212 0.3187 2.7395 18 7 2.3041 0.0954 4.2674 19 6 2.9673 -0.7492 5.2640 20 6 0.9902 0.5154 4.3389 21 6 -0.0260 0.3058 5.2656 22 6 -1.2674 0.8676 5.0653 23 6 -1.5188 1.6466 3.9395 24 8 -2.7480 2.1990 3.7580 25 6 -3.7329 1.9330 4.7587 26 6 -0.5209 1.8649 3.0087 27 6 0.7375 1.3007 3.2032 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 5.7174 2.5736 -4.0833 36 1 4.9623 1.0958 3.1558 37 1 4.6375 -0.6538 3.1167 38 1 4.3971 0.3288 1.6522 39 1 3.4278 -0.1195 6.0253 40 1 2.2326 -1.4053 5.7309 41 1 3.7346 -1.3512 4.7774 42 1 0.1588 -0.2967 6.1426 43 1 -2.0527 0.7021 5.7880 44 1 -3.3832 2.3066 5.7210 45 1 -4.6652 2.4311 4.4923 46 1 -3.9018 0.8583 4.8256 47 1 -0.7161 2.4690 2.1349 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592754167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:26 Heat of formation + Delta-G solvation = -28.458421 kcal Electronic energy + Delta-G solvation = -29139.002492 eV Core-core repulsion = 25287.196671 eV Total energy + Delta-G solvation = -3851.805821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.64228 -40.52936 -40.11272 -37.07618 -36.93604 -34.90565 -33.97628 -31.99213 -31.84781 -31.27866 -29.78944 -28.19006 -27.78212 -27.15923 -24.64784 -24.30944 -23.11690 -22.54786 -21.29964 -19.72497 -19.09782 -18.74737 -18.27367 -17.55081 -17.11431 -16.69243 -16.62666 -16.42365 -16.29159 -16.11779 -15.38068 -15.07948 -14.72192 -14.69354 -14.48075 -14.20628 -14.07437 -13.93689 -13.86433 -13.68050 -13.63039 -13.40154 -13.21467 -13.14468 -13.06273 -12.59031 -12.55574 -12.51878 -12.43347 -12.06266 -11.95162 -11.73543 -11.71230 -11.29555 -10.82792 -10.81903 -10.50063 -9.43628 -8.91228 -8.43887 -8.33270 -6.37096 0.00110 0.59790 1.31230 1.35794 1.36531 1.44365 1.64124 1.80926 2.31298 2.40194 2.47539 2.82621 3.00742 3.60862 3.65027 3.73515 3.98224 4.07810 4.13131 4.17230 4.33231 4.38658 4.41333 4.44565 4.48876 4.50070 4.58777 4.59751 4.61805 4.71693 4.75894 4.77455 4.78374 4.91037 4.92346 4.94200 4.98892 5.04444 5.22763 5.32964 5.34046 5.46614 5.56845 5.59813 5.68745 6.03003 6.25740 6.30555 6.55927 6.62540 6.69514 7.22244 7.42235 8.83295 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.003972 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.323784 B = 7047.882740 C = 8428.772128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.113 3.887 3 N -0.588 5.588 4 C 0.224 3.776 5 C -0.531 4.531 6 H 0.035 0.965 7 C 0.016 3.984 8 N -0.941 5.941 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.271 1.271 12 H -0.243 1.243 13 C 0.585 3.415 14 O -0.599 6.599 15 C -0.256 4.256 16 C 0.144 3.856 17 C -0.097 4.097 18 N -0.463 5.463 19 C 0.064 3.936 20 C 0.054 3.946 21 C -0.066 4.066 22 C -0.178 4.178 23 C 0.107 3.893 24 O -0.344 6.344 25 C 0.019 3.981 26 C -0.147 4.147 27 C -0.050 4.050 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.269 0.731 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.167 0.833 43 H 0.169 0.831 44 H 0.068 0.932 45 H 0.112 0.888 46 H 0.071 0.929 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 -11.918 22.904 30.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.009 4.009 3 N -0.318 5.318 4 C 0.102 3.898 5 C -0.570 4.570 6 H 0.053 0.947 7 C -0.182 4.182 8 N -0.582 5.582 9 Si 0.764 3.236 10 H -0.203 1.203 11 H -0.195 1.195 12 H -0.166 1.166 13 C 0.374 3.626 14 O -0.481 6.481 15 C -0.267 4.267 16 C 0.030 3.970 17 C -0.155 4.155 18 N -0.145 5.145 19 C -0.075 4.075 20 C -0.050 4.050 21 C -0.086 4.086 22 C -0.197 4.197 23 C 0.061 3.939 24 O -0.258 6.258 25 C -0.076 4.076 26 C -0.167 4.167 27 C -0.055 4.055 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.184 0.816 43 H 0.186 0.814 44 H 0.086 0.914 45 H 0.130 0.870 46 H 0.089 0.911 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.026 -11.420 22.843 29.631 hybrid contribution 0.199 1.016 -1.084 1.499 sum -14.827 -10.404 21.759 28.311 Atomic orbital electron populations 1.22164 0.94692 1.03204 1.01791 1.21527 0.95136 0.81355 1.02919 1.47991 1.63297 1.14947 1.05519 1.19342 0.95410 0.92748 0.82286 1.21490 0.96616 1.32110 1.06739 0.94653 1.25739 0.96637 0.97042 0.98787 1.70027 1.17127 1.46519 1.24480 0.85812 0.80520 0.79150 0.78112 1.20340 1.19544 1.16642 1.17842 0.75876 0.84966 0.83913 1.90701 1.48465 1.20596 1.88304 1.19536 0.96003 1.12315 0.98830 1.20359 0.95202 0.94582 0.86895 1.20619 0.88161 1.04632 1.02048 1.43567 1.08324 1.43208 1.19354 1.22420 0.99742 0.94583 0.90737 1.18300 0.86276 1.02286 0.98150 1.20192 0.89663 1.00624 0.98109 1.21224 0.98829 1.01438 0.98213 1.18668 0.84950 0.95505 0.94759 1.86071 1.19385 1.70526 1.49821 1.23349 0.90334 1.02805 0.91066 1.19447 0.91404 1.05180 1.00638 1.18467 0.91753 1.00002 0.95269 0.92937 0.93234 0.89194 0.90478 0.90211 0.93441 0.96847 0.92233 0.89656 0.86716 0.92311 0.89727 0.87229 0.88007 0.81574 0.81370 0.91375 0.86998 0.91068 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 10.24 71.98 0.74 -4.18 16 2 C 0.11 4.10 5.95 86.38 0.51 4.61 16 3 N -0.59 -27.44 2.46 -830.65 -2.04 -29.48 16 4 C 0.22 11.93 4.23 85.63 0.36 12.29 16 5 C -0.53 -32.48 9.94 25.60 0.25 -32.22 16 6 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 7 C 0.02 0.99 5.47 84.65 0.46 1.45 16 8 N -0.94 -60.38 13.96 21.45 0.30 -60.08 16 9 Si 0.94 46.40 27.47 68.60 1.88 48.29 16 10 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.24 -11.01 6.54 99.48 0.65 -10.36 16 13 C 0.59 28.49 7.02 86.51 0.61 29.09 16 14 O -0.60 -35.17 16.69 -4.24 -0.07 -35.24 16 15 C -0.26 -9.88 4.28 -19.01 -0.08 -9.96 16 16 C 0.14 4.36 6.51 41.57 0.27 4.63 16 17 C -0.10 -2.66 9.82 71.23 0.70 -1.96 16 18 N -0.46 -10.40 3.15 -523.89 -1.65 -12.05 16 19 C 0.06 0.67 10.76 127.77 1.37 2.05 16 20 C 0.05 1.35 6.79 38.88 0.26 1.61 16 21 C -0.07 -1.15 9.91 22.36 0.22 -0.93 16 22 C -0.18 -3.22 9.01 22.38 0.20 -3.02 16 23 C 0.11 2.79 6.68 22.49 0.15 2.94 16 24 O -0.34 -8.37 10.49 -93.23 -0.98 -9.35 16 25 C 0.02 0.23 9.81 113.37 1.11 1.34 16 26 C -0.15 -4.93 8.60 22.51 0.19 -4.74 16 27 C -0.05 -1.69 5.79 -20.08 -0.12 -1.81 16 28 H 0.05 1.71 5.96 -2.38 -0.01 1.70 16 29 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 2.80 8.07 -2.39 -0.02 2.78 16 32 H 0.08 2.65 6.62 -2.39 -0.02 2.64 16 33 H 0.05 2.34 7.13 -2.39 -0.02 2.32 16 34 H 0.01 0.77 6.85 -2.39 -0.02 0.76 16 35 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.11 2.02 6.86 -2.39 -0.02 2.00 16 38 H 0.06 2.06 7.85 -2.39 -0.02 2.04 16 39 H 0.08 0.71 8.14 -2.38 -0.02 0.70 16 40 H 0.11 0.57 8.03 -2.38 -0.02 0.55 16 41 H 0.10 0.77 6.82 -2.39 -0.02 0.75 16 42 H 0.17 1.43 8.01 -2.92 -0.02 1.41 16 43 H 0.17 1.70 6.26 -2.91 -0.02 1.68 16 44 H 0.07 0.64 7.64 -2.39 -0.02 0.62 16 45 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 47 H 0.10 3.72 8.05 -2.91 -0.02 3.69 16 Total: -1.00 -88.91 384.63 5.59 -83.32 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.92 Total: 13.39 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 7.23 Total: 1.20 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -3.39 Total: -101.61 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -1.05 Total: -44.59 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.29 kcal Total: -88.91 5.59 -83.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592754167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.862 kcal (2) G-P(sol) polarization free energy of solvation -88.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds