Wall clock time and date at job start Tue Mar 31 2020 16:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47171 * 240.00026 * 2 1 3 5 5 O 1.42899 * 109.46885 * 65.00292 * 4 2 1 6 6 C 1.42905 * 114.00005 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47157 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00101 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99830 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00187 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47140 * 90.00266 * 10 9 7 12 12 H 1.08000 * 119.99687 * 0.02562 * 11 10 9 13 13 C 1.37867 * 120.00305 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99902 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00221 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46690 * 60.00426 * 15 13 11 17 17 H 1.48506 * 109.47083 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47232 * 300.00507 * 15 13 11 19 19 C 1.46505 * 120.00256 * 0.02562 * 9 7 6 20 20 C 1.52995 * 109.47506 * 89.99358 * 19 9 7 21 21 C 1.47192 * 109.47456 * 180.02562 * 20 19 9 22 22 N 8.48838 * 100.48252 * 235.99253 * 2 1 3 23 23 C 1.50702 * 109.47112 * 119.99718 * 2 1 3 24 24 C 1.38234 * 120.00272 * 239.99894 * 23 2 1 25 25 C 1.38230 * 119.99880 * 179.97438 * 24 23 2 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99464 * 60.02609 * 23 2 1 29 29 H 1.09001 * 109.47141 * 300.00060 * 1 2 3 30 30 H 1.08997 * 109.47114 * 59.99789 * 1 2 3 31 31 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47213 * 184.99904 * 4 2 1 33 33 H 1.08994 * 109.47386 * 305.00081 * 4 2 1 34 34 H 1.08999 * 109.46670 * 300.00035 * 6 5 4 35 35 H 1.08997 * 109.46853 * 59.99448 * 6 5 4 36 36 H 1.09004 * 109.47495 * 210.00262 * 10 9 7 37 37 H 1.08995 * 109.47099 * 330.00496 * 10 9 7 38 38 H 0.97003 * 120.00130 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.47529 * 209.99936 * 19 9 7 40 40 H 1.09002 * 109.46972 * 329.99677 * 19 9 7 41 41 H 1.08996 * 109.47199 * 300.00781 * 20 19 9 42 42 H 1.09002 * 109.46744 * 60.00180 * 20 19 9 43 43 H 1.08001 * 119.99769 * 0.02562 * 24 23 2 44 44 H 1.08000 * 120.00376 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 46 46 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00481 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0169 -2.4130 6 6 2.0914 -0.5743 -3.6411 7 6 1.6403 0.2825 -4.7958 8 8 1.0133 1.2996 -4.5876 9 7 1.9345 -0.0809 -6.0598 10 6 1.4965 0.7524 -7.1824 11 6 2.5605 1.7726 -7.4959 12 1 3.4720 1.7974 -6.9171 13 6 2.3704 2.6741 -8.5215 14 7 1.2603 2.6441 -9.2260 15 14 3.6890 3.9391 -8.9096 16 1 4.9503 3.2441 -9.2721 17 1 3.2445 4.7845 -10.0468 18 1 3.9201 4.7947 -7.7181 19 6 2.6924 -1.3091 -6.3114 20 6 1.7237 -2.4825 -6.4714 21 6 2.4852 -3.7167 -6.7235 22 7 3.0743 -4.6683 -6.9191 23 6 2.0323 -0.7104 1.2305 24 6 2.8270 -0.0386 2.1404 25 6 3.2873 -0.6901 3.2693 26 6 2.9525 -2.0132 3.4887 27 6 2.1569 -2.6847 2.5793 28 6 1.6987 -2.0339 1.4489 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1263 -0.7994 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 3.1787 -0.6499 -3.6472 35 1 1.6575 -1.5697 -3.7364 36 1 1.3268 0.1240 -8.0568 37 1 0.5709 1.2628 -6.9165 38 1 1.1263 3.2786 -9.9473 39 1 3.2780 -1.1945 -7.2235 40 1 3.3610 -1.5018 -5.4723 41 1 1.1382 -2.5972 -5.5593 42 1 1.0552 -2.2898 -7.3105 43 1 3.0876 0.9955 1.9697 44 1 3.9079 -0.1652 3.9805 45 1 3.3157 -2.5235 4.3685 46 1 1.8955 -3.7185 2.7504 47 1 1.0778 -2.5588 0.7381 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593062444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:06 Heat of formation + Delta-G solvation = -36.965441 kcal Electronic energy + Delta-G solvation = -27104.856456 eV Core-core repulsion = 23252.681743 eV Total energy + Delta-G solvation = -3852.174713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.87178 -39.36265 -37.65050 -36.83461 -35.25071 -34.64033 -32.90066 -31.18009 -30.87592 -29.83996 -28.75378 -26.86367 -25.81475 -24.04823 -23.45181 -22.75598 -22.51887 -20.31888 -18.70486 -17.69128 -17.30541 -16.89031 -16.48372 -16.25640 -16.12349 -15.52619 -15.22111 -15.17083 -14.72510 -14.41047 -14.32850 -13.98602 -13.79642 -13.58389 -13.45978 -13.21139 -12.99887 -12.59797 -12.52219 -12.46180 -12.22377 -12.00701 -11.93041 -11.77858 -11.54270 -11.30781 -11.18055 -11.03075 -10.98770 -10.90252 -10.77521 -10.61262 -10.19709 -9.74173 -9.63369 -9.18349 -9.01477 -8.93534 -8.47221 -7.88168 -6.09079 -4.13808 1.07560 1.13627 2.68695 2.77530 3.15498 3.27409 3.30674 3.35419 3.39489 3.53299 3.85899 4.26761 4.42156 4.51479 4.62635 4.74834 4.83893 4.88067 4.89507 4.94578 5.06864 5.10978 5.18258 5.21144 5.24395 5.25890 5.28183 5.30363 5.43469 5.48118 5.58728 5.74532 5.76108 5.78574 5.85448 5.95352 6.03081 6.15790 6.24557 6.26780 6.42338 6.73887 6.83033 7.13949 7.33735 7.41979 7.53863 7.86911 8.15993 8.21349 8.82755 8.96810 9.51712 10.99041 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.002558 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.045770 B =10944.724489 C =12483.562609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 H 0.089 0.911 4 C 0.069 3.931 5 O -0.357 6.357 6 C 0.042 3.958 7 C 0.508 3.492 8 O -0.510 6.510 9 N -0.597 5.597 10 C 0.246 3.754 11 C -0.530 4.530 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.116 3.884 20 C -0.052 4.052 21 C 0.217 3.783 22 N -0.445 5.445 23 C -0.073 4.073 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.114 4.114 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.047 0.953 38 H 0.264 0.736 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 -11.304 20.778 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 H 0.108 0.892 4 C -0.008 4.008 5 O -0.275 6.275 6 C -0.038 4.038 7 C 0.293 3.707 8 O -0.384 6.384 9 N -0.331 5.331 10 C 0.128 3.872 11 C -0.569 4.569 12 H 0.076 0.924 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.011 4.011 20 C -0.093 4.093 21 C -0.101 4.101 22 N -0.122 5.122 23 C -0.073 4.073 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.132 4.132 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.441 -11.874 20.440 23.683 hybrid contribution 0.756 0.711 -0.231 1.063 sum 2.196 -11.163 20.209 23.192 Atomic orbital electron populations 1.21797 0.93304 1.01994 1.02713 1.20071 0.97114 0.99872 0.89845 0.89239 1.22552 0.98579 0.94539 0.85164 1.88014 1.78205 1.49043 1.12281 1.22408 0.99663 0.96433 0.85290 1.19942 0.81019 0.86276 0.83413 1.90720 1.38882 1.24906 1.83917 1.48176 1.54759 1.23142 1.06977 1.19364 0.96652 0.89351 0.81831 1.21375 1.03510 1.15966 1.16022 0.92407 1.24910 0.95769 0.97326 0.95940 1.69907 1.24994 1.37187 1.21143 0.86573 0.81658 0.81389 0.77904 1.20255 1.21193 1.20135 1.21331 0.92802 0.83005 1.03914 1.19917 0.97847 0.85871 1.05671 1.29106 0.93723 0.94390 0.92919 1.81221 1.09620 1.12017 1.09355 1.19795 0.97333 0.94201 0.95957 1.21137 0.97571 1.00114 0.94348 1.21153 1.00040 0.94979 0.97559 1.21154 0.98821 0.94939 0.99498 1.21151 0.98139 0.99896 0.94579 1.21055 1.00133 0.94334 0.97724 0.92700 0.90744 0.92799 0.93206 0.93172 0.90820 0.91043 0.94547 0.93469 0.92591 0.88502 0.90807 0.87624 0.86302 0.85857 0.86093 0.86264 0.86130 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.90 37.16 0.33 -1.11 16 2 C -0.05 -0.52 2.80 -91.77 -0.26 -0.78 16 3 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 4 C 0.07 0.75 5.06 37.16 0.19 0.93 16 5 O -0.36 -5.30 9.41 -55.14 -0.52 -5.82 16 6 C 0.04 0.57 4.97 36.01 0.18 0.75 16 7 C 0.51 9.59 7.75 -10.99 -0.09 9.51 16 8 O -0.51 -12.39 16.08 -14.35 -0.23 -12.62 16 9 N -0.60 -10.83 2.46 -175.06 -0.43 -11.26 16 10 C 0.25 5.80 5.16 -5.19 -0.03 5.77 16 11 C -0.53 -14.12 9.39 -34.44 -0.32 -14.44 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 15 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.12 1.49 5.17 -4.04 -0.02 1.47 16 20 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 21 C 0.22 2.51 15.43 -20.76 -0.32 2.19 16 22 N -0.44 -6.35 18.54 42.16 0.78 -5.57 16 23 C -0.07 -0.68 4.78 -104.62 -0.50 -1.18 16 24 C -0.11 -1.01 9.67 -39.59 -0.38 -1.40 16 25 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 26 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 27 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 28 C -0.11 -0.98 8.76 -39.58 -0.35 -1.33 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.90 7.82 -51.93 -0.41 0.50 16 31 H 0.05 0.49 7.39 -51.93 -0.38 0.10 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.46 7.57 -51.93 -0.39 0.07 16 34 H 0.07 0.86 7.40 -51.93 -0.38 0.47 16 35 H 0.07 0.72 7.19 -51.93 -0.37 0.35 16 36 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.10 1.33 8.07 -51.93 -0.42 0.91 16 40 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 41 H 0.11 0.84 7.22 -51.93 -0.38 0.46 16 42 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 46 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 47 H 0.12 0.91 7.16 -52.49 -0.38 0.53 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -34.08 402.40 -8.81 -42.89 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -7.16 Total: -2.47 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -3.03 Total: -2.71 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 1.09 Total: -41.54 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.75 Total: -18.44 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.08 -8.81 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593062444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.920 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds