Wall clock time and date at job start Tue Mar 31 2020 16:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47171 * 240.00026 * 2 1 3 5 5 O 1.42899 * 109.46885 * 65.00292 * 4 2 1 6 6 C 1.42905 * 114.00005 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47157 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00101 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99830 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00187 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47140 * 90.00266 * 10 9 7 12 12 H 1.08000 * 119.99687 * 0.02562 * 11 10 9 13 13 C 1.37867 * 120.00305 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99902 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00221 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46690 * 60.00426 * 15 13 11 17 17 H 1.48506 * 109.47083 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47232 * 300.00507 * 15 13 11 19 19 C 1.46505 * 120.00256 * 0.02562 * 9 7 6 20 20 C 1.52995 * 109.47506 * 89.99358 * 19 9 7 21 21 C 1.47192 * 109.47456 * 180.02562 * 20 19 9 22 22 N 8.48838 * 100.48252 * 235.99253 * 2 1 3 23 23 C 1.50702 * 109.47112 * 119.99718 * 2 1 3 24 24 C 1.38234 * 120.00272 * 239.99894 * 23 2 1 25 25 C 1.38230 * 119.99880 * 179.97438 * 24 23 2 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99464 * 60.02609 * 23 2 1 29 29 H 1.09001 * 109.47141 * 300.00060 * 1 2 3 30 30 H 1.08997 * 109.47114 * 59.99789 * 1 2 3 31 31 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47213 * 184.99904 * 4 2 1 33 33 H 1.08994 * 109.47386 * 305.00081 * 4 2 1 34 34 H 1.08999 * 109.46670 * 300.00035 * 6 5 4 35 35 H 1.08997 * 109.46853 * 59.99448 * 6 5 4 36 36 H 1.09004 * 109.47495 * 210.00262 * 10 9 7 37 37 H 1.08995 * 109.47099 * 330.00496 * 10 9 7 38 38 H 0.97003 * 120.00130 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.47529 * 209.99936 * 19 9 7 40 40 H 1.09002 * 109.46972 * 329.99677 * 19 9 7 41 41 H 1.08996 * 109.47199 * 300.00781 * 20 19 9 42 42 H 1.09002 * 109.46744 * 60.00180 * 20 19 9 43 43 H 1.08001 * 119.99769 * 0.02562 * 24 23 2 44 44 H 1.08000 * 120.00376 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 46 46 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00481 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0169 -2.4130 6 6 2.0914 -0.5743 -3.6411 7 6 1.6403 0.2825 -4.7958 8 8 1.0133 1.2996 -4.5876 9 7 1.9345 -0.0809 -6.0598 10 6 1.4965 0.7524 -7.1824 11 6 2.5605 1.7726 -7.4959 12 1 3.4720 1.7974 -6.9171 13 6 2.3704 2.6741 -8.5215 14 7 1.2603 2.6441 -9.2260 15 14 3.6890 3.9391 -8.9096 16 1 4.9503 3.2441 -9.2721 17 1 3.2445 4.7845 -10.0468 18 1 3.9201 4.7947 -7.7181 19 6 2.6924 -1.3091 -6.3114 20 6 1.7237 -2.4825 -6.4714 21 6 2.4852 -3.7167 -6.7235 22 7 3.0743 -4.6683 -6.9191 23 6 2.0323 -0.7104 1.2305 24 6 2.8270 -0.0386 2.1404 25 6 3.2873 -0.6901 3.2693 26 6 2.9525 -2.0132 3.4887 27 6 2.1569 -2.6847 2.5793 28 6 1.6987 -2.0339 1.4489 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1263 -0.7994 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 3.1787 -0.6499 -3.6472 35 1 1.6575 -1.5697 -3.7364 36 1 1.3268 0.1240 -8.0568 37 1 0.5709 1.2628 -6.9165 38 1 1.1263 3.2786 -9.9473 39 1 3.2780 -1.1945 -7.2235 40 1 3.3610 -1.5018 -5.4723 41 1 1.1382 -2.5972 -5.5593 42 1 1.0552 -2.2898 -7.3105 43 1 3.0876 0.9955 1.9697 44 1 3.9079 -0.1652 3.9805 45 1 3.3157 -2.5235 4.3685 46 1 1.8955 -3.7185 2.7504 47 1 1.0778 -2.5588 0.7381 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593062444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:05 Heat of formation + Delta-G solvation = -55.383386 kcal Electronic energy + Delta-G solvation = -27105.655119 eV Core-core repulsion = 23252.681743 eV Total energy + Delta-G solvation = -3852.973375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.88745 -40.39103 -38.65033 -37.93293 -36.65971 -35.46601 -34.83988 -32.16923 -31.76047 -30.70085 -29.99619 -28.26442 -26.89240 -25.31160 -24.40383 -24.06306 -23.25506 -21.06006 -20.08250 -18.84227 -18.34509 -18.21752 -17.84894 -17.32092 -17.13854 -16.78936 -16.26335 -16.05470 -15.86326 -15.68255 -15.42210 -15.08692 -14.68690 -14.49839 -14.32973 -14.24012 -14.09299 -13.84256 -13.64157 -13.53619 -13.32464 -13.17102 -13.05559 -12.90194 -12.85512 -12.69599 -12.51157 -12.26417 -12.15717 -11.97986 -11.85230 -11.68935 -11.68379 -11.52362 -10.58229 -10.57495 -10.50517 -9.77699 -9.59719 -9.49490 -8.17243 -6.29354 0.46382 0.54282 1.40450 1.43919 1.50224 1.67380 1.83180 1.85730 2.05915 2.42903 2.80547 2.96705 3.14247 3.24880 3.75286 3.82754 3.91646 4.01375 4.11701 4.18390 4.20238 4.21886 4.28584 4.34031 4.34828 4.42030 4.60233 4.64496 4.65687 4.68185 4.84438 4.85057 5.00979 5.06506 5.09524 5.14413 5.17612 5.23262 5.34463 5.37554 5.60418 5.62841 5.67347 5.77124 5.86508 6.13454 6.15994 6.18827 6.62046 6.74224 6.81003 7.34797 7.51348 8.89380 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.002558 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.045770 B =10944.724489 C =12483.562609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 H 0.073 0.927 4 C 0.068 3.932 5 O -0.392 6.392 6 C 0.051 3.949 7 C 0.500 3.500 8 O -0.579 6.579 9 N -0.595 5.595 10 C 0.260 3.740 11 C -0.541 4.541 12 H 0.053 0.947 13 C 0.011 3.989 14 N -0.925 5.925 15 Si 0.957 3.043 16 H -0.262 1.262 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.110 3.890 20 C -0.039 4.039 21 C 0.246 3.754 22 N -0.489 5.489 23 C -0.083 4.083 24 C -0.130 4.130 25 C -0.127 4.127 26 C -0.131 4.131 27 C -0.125 4.125 28 C -0.122 4.122 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.039 0.961 37 H 0.002 0.998 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.138 0.862 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 -13.462 22.316 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 H 0.091 0.909 4 C -0.008 4.008 5 O -0.311 6.311 6 C -0.028 4.028 7 C 0.288 3.712 8 O -0.458 6.458 9 N -0.327 5.327 10 C 0.139 3.861 11 C -0.580 4.580 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.565 5.565 15 Si 0.782 3.218 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.206 1.206 19 C -0.014 4.014 20 C -0.080 4.080 21 C -0.071 4.071 22 N -0.167 5.167 23 C -0.083 4.083 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.149 4.149 27 C -0.143 4.143 28 C -0.140 4.140 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.057 0.943 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.155 0.845 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.155 0.845 45 H 0.158 0.842 46 H 0.159 0.841 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.836 -14.093 21.981 26.264 hybrid contribution 0.319 1.375 -0.644 1.552 sum 3.155 -12.717 21.337 25.039 Atomic orbital electron populations 1.21739 0.93535 1.02529 1.01539 1.20009 0.96917 0.99250 0.90540 0.90901 1.22722 0.99258 0.95132 0.83726 1.87990 1.78860 1.50747 1.13491 1.22413 1.01197 0.96429 0.82745 1.20986 0.79609 0.85971 0.84606 1.90688 1.41983 1.28123 1.84967 1.48034 1.54813 1.24117 1.05768 1.18823 0.94157 0.89506 0.83582 1.21726 1.03883 1.16741 1.15659 0.92841 1.25725 0.97759 0.99292 0.96071 1.70015 1.26648 1.38123 1.21737 0.85624 0.79707 0.79009 0.77413 1.18643 1.20721 1.20646 1.21588 0.93252 0.81534 1.05013 1.19843 0.96977 0.83763 1.07431 1.29116 0.92598 0.93889 0.91474 1.81270 1.10901 1.13521 1.10989 1.19729 0.98151 0.94742 0.95681 1.21300 0.98073 1.00483 0.94965 1.21410 1.00100 0.95456 0.97495 1.21484 0.98380 0.94858 1.00138 1.21455 0.97730 1.00910 0.94177 1.21231 1.00334 0.94003 0.98406 0.92435 0.93284 0.91368 0.92366 0.90877 0.88168 0.86574 0.94288 0.97941 0.92557 0.89485 0.87400 0.84455 0.86067 0.85776 0.84503 0.84206 0.84118 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.90 71.98 0.64 -2.10 16 2 C -0.05 -0.97 2.80 -11.54 -0.03 -1.00 16 3 H 0.07 1.65 7.88 -2.38 -0.02 1.63 16 4 C 0.07 1.33 5.06 71.98 0.36 1.70 16 5 O -0.39 -11.15 9.41 -129.94 -1.22 -12.37 16 6 C 0.05 1.25 4.97 71.24 0.35 1.60 16 7 C 0.50 18.67 7.75 87.66 0.68 19.35 16 8 O -0.58 -29.22 16.08 16.00 0.26 -28.96 16 9 N -0.60 -21.22 2.46 -826.16 -2.03 -23.25 16 10 C 0.26 12.57 5.16 85.63 0.44 13.01 16 11 C -0.54 -29.34 9.39 25.60 0.24 -29.10 16 12 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 13 C 0.01 0.60 5.46 84.65 0.46 1.06 16 14 N -0.93 -53.86 13.29 21.44 0.28 -53.57 16 15 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 16 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 C 0.11 2.56 5.17 86.38 0.45 3.00 16 20 C -0.04 -0.65 6.03 28.78 0.17 -0.48 16 21 C 0.25 5.01 15.43 89.44 1.38 6.39 16 22 N -0.49 -12.93 18.54 20.01 0.37 -12.56 16 23 C -0.08 -1.45 4.78 -19.87 -0.09 -1.55 16 24 C -0.13 -2.21 9.67 22.27 0.22 -1.99 16 25 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 26 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 27 C -0.12 -1.62 10.05 22.27 0.22 -1.39 16 28 C -0.12 -1.81 8.76 22.27 0.20 -1.62 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.23 7.82 -2.39 -0.02 1.21 16 31 H 0.07 1.14 7.39 -2.39 -0.02 1.12 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.09 7.57 -2.39 -0.02 1.08 16 34 H 0.10 1.93 7.40 -2.39 -0.02 1.91 16 35 H 0.12 1.77 7.19 -2.39 -0.02 1.76 16 36 H 0.04 1.84 8.07 -2.38 -0.02 1.82 16 37 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 38 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.09 2.23 8.07 -2.39 -0.02 2.21 16 40 H 0.11 1.80 6.44 -2.39 -0.02 1.79 16 41 H 0.14 1.53 7.22 -2.39 -0.02 1.51 16 42 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.12 1.95 7.95 -2.91 -0.02 1.93 16 44 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 46 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.13 1.59 7.16 -2.91 -0.02 1.57 16 Total: -1.00 -78.28 402.40 6.78 -71.50 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.96 Total: 9.50 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 6.14 Total: 3.86 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -1.37 Total: -89.39 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.97 Total: -41.33 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -78.28 6.78 -71.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593062444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.113 kcal (2) G-P(sol) polarization free energy of solvation -78.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds