Wall clock time and date at job start Tue Mar 31 2020 16:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46607 * 2 1 4 4 C 1.47204 * 109.47430 * 119.99622 * 2 1 3 5 5 N 2.60799 * 109.47252 * 119.99730 * 2 1 3 6 6 N 1.46898 * 109.47302 * 239.99832 * 2 1 3 7 7 C 1.46903 * 110.99686 * 74.14417 * 6 2 1 8 8 C 1.53007 * 109.46797 * 169.99676 * 7 6 2 9 9 H 1.09004 * 109.46531 * 59.99990 * 8 7 6 10 10 O 1.42895 * 109.47473 * 300.00425 * 8 7 6 11 11 C 1.52999 * 109.47224 * 179.97438 * 8 7 6 12 12 O 1.42901 * 109.47263 * 185.00370 * 11 8 7 13 13 C 1.35675 * 116.99667 * 180.02562 * 12 11 8 14 14 C 1.39307 * 119.81751 * 359.72688 * 13 12 11 15 15 C 1.36447 * 120.17889 * 179.76124 * 14 13 12 16 16 C 1.40830 * 119.81252 * 0.50944 * 15 14 13 17 17 C 1.41215 * 120.17574 * 179.71967 * 16 15 14 18 18 H 1.08007 * 119.99794 * 156.04646 * 17 16 15 19 19 C 1.39888 * 120.00215 * 336.04527 * 17 16 15 20 20 N 1.30883 * 120.00337 * 340.68425 * 19 17 16 21 21 Si 1.86803 * 119.99748 * 160.68204 * 19 17 16 22 22 H 1.48506 * 109.46927 * 94.78174 * 21 19 17 23 23 H 1.48502 * 109.46821 * 214.77633 * 21 19 17 24 24 H 1.48491 * 109.47342 * 334.78006 * 21 19 17 25 25 C 1.40833 * 119.64353 * 359.74445 * 16 15 14 26 26 C 1.36437 * 119.80605 * 359.97438 * 25 16 15 27 27 C 1.46900 * 110.99875 * 310.19277 * 6 2 1 28 28 C 1.53003 * 117.49601 * 222.65951 * 27 6 2 29 29 C 1.52997 * 117.49687 * 291.32036 * 27 6 2 30 30 H 1.09001 * 109.47263 * 299.99894 * 1 2 3 31 31 H 1.08999 * 109.47347 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.46870 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47376 * 289.99934 * 7 6 2 34 34 H 1.08997 * 109.47297 * 50.00578 * 7 6 2 35 35 H 0.96699 * 113.99597 * 299.99419 * 10 8 7 36 36 H 1.08999 * 109.47046 * 305.00969 * 11 8 7 37 37 H 1.09003 * 109.46634 * 65.00270 * 11 8 7 38 38 H 1.08002 * 119.91446 * 0.02562 * 14 13 12 39 39 H 1.08007 * 120.08890 * 180.25476 * 15 14 13 40 40 H 0.96993 * 120.00334 * 179.97438 * 20 19 17 41 41 H 1.07995 * 120.09368 * 179.97438 * 25 16 15 42 42 H 1.08008 * 119.90046 * 179.97438 * 26 25 16 43 43 H 1.08999 * 115.54923 * 76.99364 * 27 6 2 44 44 H 1.08995 * 117.50014 * 215.00159 * 28 27 6 45 45 H 1.09006 * 117.49581 * 0.02632 * 28 27 6 46 46 H 1.09000 * 117.50065 * 359.97438 * 29 27 6 47 47 H 1.08996 * 117.50094 * 145.00111 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0208 -0.6938 1.2019 5 7 2.3994 -1.2293 2.1295 6 7 2.0197 -0.6925 -1.1994 7 6 1.8419 0.1394 -2.3970 8 6 2.5807 -0.4985 -3.5753 9 1 2.1772 -1.4939 -3.7611 10 8 3.9724 -0.5986 -3.2671 11 6 2.3951 0.3676 -4.8229 12 8 2.9855 -0.2856 -5.9484 13 6 2.9083 0.3543 -7.1422 14 6 2.2683 1.5888 -7.2263 15 6 2.1906 2.2411 -8.4222 16 6 2.7502 1.6579 -9.5755 17 6 2.6689 2.3235 -10.8183 18 1 3.3890 2.1086 -11.5941 19 6 1.6558 3.2612 -11.0447 20 7 0.5832 3.2598 -10.2946 21 14 1.8339 4.5154 -12.4175 22 1 1.1584 4.0105 -13.6399 23 1 1.2101 5.7971 -12.0010 24 1 3.2743 4.7357 -12.7031 25 6 3.3907 0.4071 -9.4828 26 6 3.4648 -0.2292 -8.2782 27 6 1.3607 -1.9955 -1.3609 28 6 2.2345 -3.1831 -1.7697 29 6 1.6932 -3.0864 -0.3410 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.7803 0.2157 -2.6321 34 1 2.2454 1.1347 -2.2112 35 1 4.3981 0.2514 -3.0899 36 1 1.3311 0.5170 -5.0064 37 1 2.8764 1.3334 -4.6695 38 1 1.8362 2.0328 -6.3417 39 1 1.6976 3.2001 -8.4849 40 1 -0.1191 3.9102 -10.4514 41 1 3.8220 -0.0469 -10.3626 42 1 3.9554 -1.1887 -8.2054 43 1 0.3427 -1.9625 -1.7488 44 1 1.7912 -3.9315 -2.4265 45 1 3.2983 -2.9976 -1.9184 46 1 2.4012 -2.8375 0.4495 47 1 0.8939 -3.7713 -0.0580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595710024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:50 Heat of formation + Delta-G solvation = -0.736883 kcal Electronic energy + Delta-G solvation = -27435.995168 eV Core-core repulsion = 23585.391443 eV Total energy + Delta-G solvation = -3850.603725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.04274 -38.87272 -37.29366 -36.43318 -35.93679 -34.96645 -33.36376 -31.68864 -29.79965 -29.57662 -28.70805 -25.94783 -24.82207 -24.28606 -22.65629 -22.33994 -21.06611 -20.48630 -20.36166 -18.13155 -17.37758 -17.01395 -16.59092 -16.31568 -16.14201 -15.71525 -15.21179 -15.18172 -14.55128 -14.26681 -13.96320 -13.89239 -13.68703 -13.50851 -13.32790 -13.02823 -12.78786 -12.67164 -12.43031 -12.31108 -12.07659 -12.00730 -11.77260 -11.59032 -11.53116 -11.43724 -11.13703 -11.05285 -10.89671 -10.62532 -10.53614 -10.41520 -10.04060 -9.88766 -9.82030 -9.38631 -9.02086 -8.83310 -7.67708 -7.04334 -6.76719 -4.26842 2.23976 2.48826 2.74550 2.94321 3.06015 3.10198 3.19926 3.27696 3.49107 3.63339 3.91844 3.93478 4.44514 4.45664 4.54210 4.58570 4.65391 4.71875 4.82406 4.87102 5.00968 5.05545 5.13641 5.23828 5.29161 5.34783 5.38315 5.47141 5.60364 5.62225 5.65681 5.82411 6.01325 6.07262 6.07579 6.26620 6.38520 6.60016 6.70477 6.87325 7.04321 7.25373 7.25799 7.38953 7.53664 7.75810 7.88078 7.97982 8.13323 8.42584 8.62907 8.87708 8.97186 10.18033 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.002104 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.182242 B =13306.844913 C =13925.018918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.178 3.822 3 H 0.125 0.875 4 C 0.226 3.774 5 N -0.430 5.430 6 N -0.492 5.492 7 C 0.030 3.970 8 C 0.119 3.881 9 H 0.107 0.893 10 O -0.538 6.538 11 C 0.038 3.962 12 O -0.317 6.317 13 C -0.010 4.010 14 C -0.174 4.174 15 C -0.136 4.136 16 C 0.087 3.913 17 C -0.463 4.463 18 H 0.077 0.923 19 C 0.076 3.924 20 N -0.799 5.799 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.196 4.196 26 C -0.111 4.111 27 C -0.005 4.005 28 C -0.151 4.151 29 C -0.180 4.180 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.370 0.630 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.279 0.721 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -3.114 17.070 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.066 3.934 3 H 0.142 0.858 4 C -0.092 4.092 5 N -0.106 5.106 6 N -0.216 5.216 7 C -0.098 4.098 8 C 0.058 3.942 9 H 0.125 0.875 10 O -0.342 6.342 11 C -0.039 4.039 12 O -0.233 6.233 13 C -0.054 4.054 14 C -0.192 4.192 15 C -0.156 4.156 16 C 0.085 3.915 17 C -0.493 4.493 18 H 0.095 0.905 19 C -0.141 4.141 20 N -0.425 5.425 21 Si 0.729 3.271 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.216 4.216 26 C -0.130 4.130 27 C -0.113 4.113 28 C -0.188 4.188 29 C -0.218 4.218 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.216 0.784 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.128 0.872 46 H 0.117 0.883 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.106 -4.692 18.492 19.194 hybrid contribution -1.267 1.863 -1.017 2.472 sum -3.373 -2.829 17.475 18.021 Atomic orbital electron populations 1.22437 0.93899 1.03954 1.03935 1.19121 0.94071 0.96827 0.83342 0.85767 1.28792 0.93159 0.93280 0.94011 1.81202 1.08584 1.08677 1.12168 1.61720 1.56244 1.02375 1.01247 1.22777 1.00310 0.96845 0.89853 1.21814 0.82774 1.00384 0.89188 0.87475 1.86638 1.20911 1.34689 1.91953 1.23108 0.98137 0.95871 0.86819 1.85865 1.76299 1.46472 1.14646 1.18575 1.07443 0.94898 0.84447 1.20578 1.04427 0.95933 0.98308 1.20918 1.03468 1.00365 0.90841 1.17594 0.90499 0.90228 0.93185 1.19467 1.11267 1.19089 0.99439 0.90477 1.25876 0.93926 0.97192 0.97118 1.69847 1.04806 1.31303 1.36522 0.86357 0.79807 0.79936 0.80968 1.19642 1.20119 1.18447 1.20598 1.09010 0.96542 0.95466 1.19623 1.02864 0.99460 0.91081 1.22443 0.96908 0.85806 1.06180 1.23128 1.01209 0.97992 0.96495 1.23204 1.03915 1.00654 0.94026 0.90997 0.90314 0.91048 0.92552 0.89360 0.78389 0.92508 0.92863 0.88924 0.86249 0.91019 0.88222 0.88485 0.88671 0.88550 0.87169 0.88309 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.85 8.50 37.16 0.32 -0.54 16 2 C 0.18 1.09 2.76 -70.50 -0.19 0.90 16 3 H 0.12 0.50 7.85 -51.93 -0.41 0.10 16 4 C 0.23 2.07 12.21 -20.76 -0.25 1.81 16 5 N -0.43 -5.07 17.72 42.15 0.75 -4.32 16 6 N -0.49 -3.79 4.42 -222.07 -0.98 -4.77 16 7 C 0.03 0.22 4.28 -3.82 -0.02 0.20 16 8 C 0.12 1.30 3.03 -26.73 -0.08 1.22 16 9 H 0.11 1.30 6.64 -51.93 -0.34 0.96 16 10 O -0.54 -6.58 13.17 -40.06 -0.53 -7.10 16 11 C 0.04 0.53 4.37 37.16 0.16 0.69 16 12 O -0.32 -6.17 10.09 -23.55 -0.24 -6.41 16 13 C -0.01 -0.23 6.71 -38.79 -0.26 -0.49 16 14 C -0.17 -3.91 8.96 -39.83 -0.36 -4.26 16 15 C -0.14 -3.45 8.65 -39.25 -0.34 -3.78 16 16 C 0.09 2.29 5.58 -106.81 -0.60 1.69 16 17 C -0.46 -12.09 9.03 -37.83 -0.34 -12.43 16 18 H 0.08 1.94 7.92 -52.48 -0.42 1.52 16 19 C 0.08 1.87 5.11 -17.34 -0.09 1.78 16 20 N -0.80 -20.22 11.01 55.54 0.61 -19.61 16 21 Si 0.90 18.31 29.60 -169.99 -5.03 13.28 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 C -0.20 -4.78 9.74 -39.25 -0.38 -5.17 16 26 C -0.11 -2.56 9.92 -39.83 -0.40 -2.96 16 27 C -0.01 -0.04 2.73 -67.71 -0.18 -0.23 16 28 C -0.15 -1.41 9.37 -26.69 -0.25 -1.66 16 29 C -0.18 -1.61 9.27 -26.69 -0.25 -1.85 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.31 7.08 -51.93 -0.37 -0.06 16 32 H 0.07 0.39 6.71 -51.93 -0.35 0.04 16 33 H 0.06 0.36 7.19 -51.93 -0.37 -0.01 16 34 H 0.09 0.50 7.88 -51.93 -0.41 0.09 16 35 H 0.37 3.39 9.05 45.56 0.41 3.80 16 36 H 0.06 0.77 7.64 -51.93 -0.40 0.38 16 37 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 38 H 0.09 1.80 6.27 -52.49 -0.33 1.48 16 39 H 0.12 3.09 6.17 -52.48 -0.32 2.77 16 40 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 41 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 43 H 0.10 0.69 7.57 -51.93 -0.39 0.29 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.10 1.06 5.76 -51.93 -0.30 0.76 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -30.63 385.88 -9.18 -39.81 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.06 Total: 8.38 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -3.51 Total: -25.07 kcal Atomic # 7 Polarization: -29.08 SS G_CDS: 0.38 Total: -28.70 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.77 Total: -13.51 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.63 -9.18 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595710024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.075 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds