Wall clock time and date at job start Tue Mar 31 2020 16:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46607 * 2 1 4 4 C 1.47204 * 109.47430 * 119.99622 * 2 1 3 5 5 N 2.60799 * 109.47252 * 119.99730 * 2 1 3 6 6 N 1.46898 * 109.47302 * 239.99832 * 2 1 3 7 7 C 1.46903 * 110.99686 * 74.14417 * 6 2 1 8 8 C 1.53007 * 109.46797 * 169.99676 * 7 6 2 9 9 H 1.09004 * 109.46531 * 59.99990 * 8 7 6 10 10 O 1.42895 * 109.47473 * 300.00425 * 8 7 6 11 11 C 1.52999 * 109.47224 * 179.97438 * 8 7 6 12 12 O 1.42901 * 109.47263 * 185.00370 * 11 8 7 13 13 C 1.35675 * 116.99667 * 180.02562 * 12 11 8 14 14 C 1.39307 * 119.81751 * 359.72688 * 13 12 11 15 15 C 1.36447 * 120.17889 * 179.76124 * 14 13 12 16 16 C 1.40830 * 119.81252 * 0.50944 * 15 14 13 17 17 C 1.41215 * 120.17574 * 179.71967 * 16 15 14 18 18 H 1.08007 * 119.99794 * 156.04646 * 17 16 15 19 19 C 1.39888 * 120.00215 * 336.04527 * 17 16 15 20 20 N 1.30883 * 120.00337 * 340.68425 * 19 17 16 21 21 Si 1.86803 * 119.99748 * 160.68204 * 19 17 16 22 22 H 1.48506 * 109.46927 * 94.78174 * 21 19 17 23 23 H 1.48502 * 109.46821 * 214.77633 * 21 19 17 24 24 H 1.48491 * 109.47342 * 334.78006 * 21 19 17 25 25 C 1.40833 * 119.64353 * 359.74445 * 16 15 14 26 26 C 1.36437 * 119.80605 * 359.97438 * 25 16 15 27 27 C 1.46900 * 110.99875 * 310.19277 * 6 2 1 28 28 C 1.53003 * 117.49601 * 222.65951 * 27 6 2 29 29 C 1.52997 * 117.49687 * 291.32036 * 27 6 2 30 30 H 1.09001 * 109.47263 * 299.99894 * 1 2 3 31 31 H 1.08999 * 109.47347 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.46870 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47376 * 289.99934 * 7 6 2 34 34 H 1.08997 * 109.47297 * 50.00578 * 7 6 2 35 35 H 0.96699 * 113.99597 * 299.99419 * 10 8 7 36 36 H 1.08999 * 109.47046 * 305.00969 * 11 8 7 37 37 H 1.09003 * 109.46634 * 65.00270 * 11 8 7 38 38 H 1.08002 * 119.91446 * 0.02562 * 14 13 12 39 39 H 1.08007 * 120.08890 * 180.25476 * 15 14 13 40 40 H 0.96993 * 120.00334 * 179.97438 * 20 19 17 41 41 H 1.07995 * 120.09368 * 179.97438 * 25 16 15 42 42 H 1.08008 * 119.90046 * 179.97438 * 26 25 16 43 43 H 1.08999 * 115.54923 * 76.99364 * 27 6 2 44 44 H 1.08995 * 117.50014 * 215.00159 * 28 27 6 45 45 H 1.09006 * 117.49581 * 0.02632 * 28 27 6 46 46 H 1.09000 * 117.50065 * 359.97438 * 29 27 6 47 47 H 1.08996 * 117.50094 * 145.00111 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0208 -0.6938 1.2019 5 7 2.3994 -1.2293 2.1295 6 7 2.0197 -0.6925 -1.1994 7 6 1.8419 0.1394 -2.3970 8 6 2.5807 -0.4985 -3.5753 9 1 2.1772 -1.4939 -3.7611 10 8 3.9724 -0.5986 -3.2671 11 6 2.3951 0.3676 -4.8229 12 8 2.9855 -0.2856 -5.9484 13 6 2.9083 0.3543 -7.1422 14 6 2.2683 1.5888 -7.2263 15 6 2.1906 2.2411 -8.4222 16 6 2.7502 1.6579 -9.5755 17 6 2.6689 2.3235 -10.8183 18 1 3.3890 2.1086 -11.5941 19 6 1.6558 3.2612 -11.0447 20 7 0.5832 3.2598 -10.2946 21 14 1.8339 4.5154 -12.4175 22 1 1.1584 4.0105 -13.6399 23 1 1.2101 5.7971 -12.0010 24 1 3.2743 4.7357 -12.7031 25 6 3.3907 0.4071 -9.4828 26 6 3.4648 -0.2292 -8.2782 27 6 1.3607 -1.9955 -1.3609 28 6 2.2345 -3.1831 -1.7697 29 6 1.6932 -3.0864 -0.3410 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.7803 0.2157 -2.6321 34 1 2.2454 1.1347 -2.2112 35 1 4.3981 0.2514 -3.0899 36 1 1.3311 0.5170 -5.0064 37 1 2.8764 1.3334 -4.6695 38 1 1.8362 2.0328 -6.3417 39 1 1.6976 3.2001 -8.4849 40 1 -0.1191 3.9102 -10.4514 41 1 3.8220 -0.0469 -10.3626 42 1 3.9554 -1.1887 -8.2054 43 1 0.3427 -1.9625 -1.7488 44 1 1.7912 -3.9315 -2.4265 45 1 3.2983 -2.9976 -1.9184 46 1 2.4012 -2.8375 0.4495 47 1 0.8939 -3.7713 -0.0580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595710024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:49 Heat of formation + Delta-G solvation = -20.552035 kcal Electronic energy + Delta-G solvation = -27436.854418 eV Core-core repulsion = 23585.391443 eV Total energy + Delta-G solvation = -3851.462975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.82206 -40.29629 -38.53986 -37.50663 -37.01854 -35.62994 -35.16767 -32.44663 -31.49622 -31.12975 -29.86951 -27.02239 -26.16248 -25.08085 -23.56135 -23.26531 -22.72001 -21.95821 -21.21165 -19.23875 -18.82839 -18.44773 -17.65809 -17.30063 -16.85756 -16.72759 -16.41634 -16.00386 -15.84202 -15.64587 -15.29204 -14.89621 -14.71144 -14.48267 -14.26474 -14.13835 -13.93002 -13.74940 -13.58298 -13.48633 -13.32008 -13.11563 -12.85016 -12.72695 -12.68979 -12.55312 -12.28965 -12.26893 -12.05820 -11.82797 -11.66412 -11.52814 -11.25718 -11.18836 -11.08186 -10.84980 -10.80524 -9.52440 -9.39345 -8.87392 -8.58498 -6.18523 0.97879 1.08244 1.41600 1.51102 1.55835 1.57626 1.81646 2.24777 2.46749 2.74528 2.79437 2.91916 3.05364 3.66840 3.74715 3.85664 3.95500 4.01821 4.06648 4.14946 4.15330 4.21485 4.33602 4.35766 4.43046 4.47866 4.56921 4.69275 4.73151 4.76961 4.80704 4.90611 4.93966 5.04800 5.08211 5.17406 5.18691 5.27371 5.29984 5.40521 5.57144 5.69757 5.85330 5.99972 6.01606 6.09537 6.28332 6.59330 6.60195 6.84324 6.98267 7.02110 7.15953 8.38194 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.002104 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.182242 B =13306.844913 C =13925.018918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.179 3.821 3 H 0.155 0.845 4 C 0.246 3.754 5 N -0.484 5.484 6 N -0.505 5.505 7 C 0.038 3.962 8 C 0.127 3.873 9 H 0.093 0.907 10 O -0.559 6.559 11 C 0.028 3.972 12 O -0.330 6.330 13 C 0.003 3.997 14 C -0.172 4.172 15 C -0.156 4.156 16 C 0.053 3.947 17 C -0.501 4.501 18 H 0.073 0.927 19 C 0.036 3.964 20 N -0.828 5.828 21 Si 0.978 3.022 22 H -0.265 1.265 23 H -0.265 1.265 24 H -0.261 1.261 25 C -0.208 4.208 26 C -0.126 4.126 27 C 0.007 3.993 28 C -0.162 4.162 29 C -0.181 4.181 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.382 0.618 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.287 0.713 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 -1.725 17.790 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.068 3.932 3 H 0.172 0.828 4 C -0.072 4.072 5 N -0.162 5.162 6 N -0.230 5.230 7 C -0.089 4.089 8 C 0.067 3.933 9 H 0.111 0.889 10 O -0.365 6.365 11 C -0.048 4.048 12 O -0.246 6.246 13 C -0.041 4.041 14 C -0.191 4.191 15 C -0.175 4.175 16 C 0.051 3.949 17 C -0.531 4.531 18 H 0.091 0.909 19 C -0.178 4.178 20 N -0.455 5.455 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.189 1.189 24 H -0.185 1.185 25 C -0.227 4.227 26 C -0.144 4.144 27 C -0.101 4.101 28 C -0.199 4.199 29 C -0.218 4.218 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.231 0.769 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.143 0.857 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.219 -3.309 19.239 19.785 hybrid contribution -0.884 1.315 -1.089 1.923 sum -4.102 -1.994 18.150 18.714 Atomic orbital electron populations 1.22430 0.92300 1.03858 1.05231 1.19424 0.95171 0.97410 0.81181 0.82791 1.29431 0.91736 0.92110 0.93949 1.81216 1.10446 1.10398 1.14117 1.61585 1.56991 1.02410 1.01975 1.22707 1.00985 0.97248 0.87995 1.21744 0.82754 0.99469 0.89321 0.88927 1.86617 1.21835 1.36066 1.91968 1.23530 0.98477 0.96964 0.85841 1.85870 1.76717 1.47159 1.14819 1.18671 1.05518 0.94393 0.85518 1.20820 1.03915 0.95862 0.98507 1.20917 1.04418 1.00420 0.91771 1.17951 0.91796 0.91252 0.93924 1.19690 1.12380 1.21187 0.99795 0.90902 1.26672 0.93063 0.98424 0.99631 1.69882 1.05405 1.32123 1.38091 0.85257 0.79617 0.77417 0.77797 1.18981 1.18941 1.18497 1.20768 1.09114 0.96354 0.96490 1.19891 1.03166 1.00225 0.91137 1.22533 0.97168 0.85779 1.04605 1.23041 1.00199 0.99617 0.97085 1.23117 1.03792 1.01720 0.93206 0.90081 0.88646 0.91874 0.90613 0.86800 0.76926 0.91530 0.91474 0.85750 0.87475 0.90207 0.87658 0.86771 0.87048 0.87948 0.89518 0.90267 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 8.50 71.98 0.61 -0.40 16 2 C 0.18 1.62 2.76 43.11 0.12 1.74 16 3 H 0.15 0.54 7.85 -2.39 -0.02 0.52 16 4 C 0.25 4.13 12.21 89.44 1.09 5.22 16 5 N -0.48 -11.31 17.72 20.01 0.35 -10.95 16 6 N -0.50 -6.35 4.42 -856.50 -3.78 -10.13 16 7 C 0.04 0.41 4.28 86.30 0.37 0.77 16 8 C 0.13 2.45 3.03 30.60 0.09 2.55 16 9 H 0.09 2.08 6.64 -2.39 -0.02 2.06 16 10 O -0.56 -12.63 13.17 -144.37 -1.90 -14.53 16 11 C 0.03 0.70 4.37 71.98 0.31 1.02 16 12 O -0.33 -12.20 10.09 -85.31 -0.86 -13.06 16 13 C 0.00 0.13 6.71 22.78 0.15 0.28 16 14 C -0.17 -7.55 8.96 22.11 0.20 -7.35 16 15 C -0.16 -7.93 8.65 22.49 0.19 -7.73 16 16 C 0.05 2.84 5.58 -21.28 -0.12 2.72 16 17 C -0.50 -26.83 9.03 23.40 0.21 -26.62 16 18 H 0.07 3.79 7.92 -2.91 -0.02 3.77 16 19 C 0.04 1.80 5.11 85.23 0.44 2.24 16 20 N -0.83 -42.27 11.01 21.82 0.24 -42.03 16 21 Si 0.98 37.55 29.60 68.60 2.03 39.58 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 23 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 C -0.21 -10.28 9.74 22.48 0.22 -10.06 16 26 C -0.13 -5.73 9.92 22.11 0.22 -5.51 16 27 C 0.01 0.11 2.73 44.92 0.12 0.23 16 28 C -0.16 -2.95 9.37 30.62 0.29 -2.67 16 29 C -0.18 -3.10 9.27 30.62 0.28 -2.81 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.09 0.28 7.08 -2.39 -0.02 0.26 16 32 H 0.06 0.49 6.71 -2.38 -0.02 0.47 16 33 H 0.08 0.58 7.19 -2.39 -0.02 0.56 16 34 H 0.11 0.70 7.88 -2.39 -0.02 0.68 16 35 H 0.38 6.12 9.05 -74.06 -0.67 5.45 16 36 H 0.07 1.57 7.64 -2.39 -0.02 1.55 16 37 H 0.07 1.52 7.66 -2.39 -0.02 1.50 16 38 H 0.12 4.51 6.27 -2.91 -0.02 4.49 16 39 H 0.11 5.64 6.17 -2.91 -0.02 5.62 16 40 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 41 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 42 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.11 1.26 7.57 -2.39 -0.02 1.24 16 44 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.08 1.71 5.76 -2.39 -0.01 1.70 16 47 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -68.63 385.88 1.21 -67.42 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.33 Total: 30.10 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 4.80 Total: -46.39 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -3.19 Total: -63.11 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -2.76 Total: -27.60 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -68.63 1.21 -67.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595710024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.871 kcal (2) G-P(sol) polarization free energy of solvation -68.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds