Wall clock time and date at job start Tue Mar 31 2020 16:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46875 * 2 1 4 4 C 1.47194 * 109.46969 * 240.00228 * 2 1 3 5 5 N 2.60796 * 109.46963 * 240.00039 * 2 1 3 6 6 N 1.46904 * 109.47062 * 120.00107 * 2 1 3 7 7 C 1.46898 * 110.99769 * 287.96023 * 6 2 1 8 8 C 1.53008 * 109.46647 * 190.00046 * 7 6 2 9 9 H 1.08995 * 109.47219 * 304.99725 * 8 7 6 10 10 O 1.42894 * 109.46916 * 65.00052 * 8 7 6 11 11 C 1.53000 * 109.46711 * 184.99926 * 8 7 6 12 12 O 1.42903 * 109.47183 * 175.00189 * 11 8 7 13 13 C 1.35666 * 117.00428 * 180.02562 * 12 11 8 14 14 C 1.39309 * 119.82017 * 180.02562 * 13 12 11 15 15 C 1.36439 * 120.18921 * 180.25304 * 14 13 12 16 16 C 1.40830 * 119.80651 * 359.45638 * 15 14 13 17 17 C 1.41217 * 120.18015 * 180.25244 * 16 15 14 18 18 H 1.07999 * 120.00456 * 209.49415 * 17 16 15 19 19 C 1.39893 * 119.99710 * 29.49929 * 17 16 15 20 20 N 1.30874 * 120.00315 * 11.08394 * 19 17 16 21 21 Si 1.86802 * 120.00031 * 191.08587 * 19 17 16 22 22 H 1.48508 * 109.47078 * 89.99653 * 21 19 17 23 23 H 1.48495 * 109.47502 * 209.99789 * 21 19 17 24 24 H 1.48506 * 109.47032 * 330.00053 * 21 19 17 25 25 C 1.40835 * 119.64547 * 0.53868 * 16 15 14 26 26 C 1.36439 * 119.80914 * 359.73382 * 25 16 15 27 27 C 1.46897 * 110.99822 * 51.91096 * 6 2 1 28 28 C 1.53005 * 117.49784 * 138.08212 * 27 6 2 29 29 C 1.52999 * 59.99910 * 252.50891 * 28 27 6 30 30 H 1.09003 * 109.46815 * 299.99834 * 1 2 3 31 31 H 1.09001 * 109.47258 * 59.99873 * 1 2 3 32 32 H 1.08995 * 109.47359 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47432 * 69.99981 * 7 6 2 34 34 H 1.08998 * 109.47379 * 309.99435 * 7 6 2 35 35 H 0.96706 * 114.00350 * 60.00225 * 10 8 7 36 36 H 1.08996 * 109.47304 * 54.99954 * 11 8 7 37 37 H 1.09001 * 109.47007 * 294.99565 * 11 8 7 38 38 H 1.08002 * 119.90836 * 359.97023 * 14 13 12 39 39 H 1.07997 * 120.09628 * 179.69738 * 15 14 13 40 40 H 0.97000 * 120.00397 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.09967 * 179.71953 * 25 16 15 42 42 H 1.07996 * 119.91022 * 179.97438 * 26 25 16 43 43 H 1.08997 * 115.55702 * 283.79066 * 27 6 2 44 44 H 1.08998 * 117.49645 * 359.97438 * 28 27 6 45 45 H 1.08998 * 117.49712 * 145.02001 * 28 27 6 46 46 H 1.08999 * 117.49829 * 252.50289 * 29 28 27 47 47 H 1.09002 * 117.49865 * 107.48967 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 7 2.0197 -0.6925 1.1995 7 6 1.7964 0.1186 2.4036 8 6 2.5337 -0.5117 3.5870 9 1 2.2214 -1.5500 3.6983 10 8 3.9424 -0.4605 3.3524 11 6 2.2011 0.2609 4.8650 12 8 2.7952 -0.3956 5.9867 13 6 2.5944 0.1647 7.2058 14 6 3.1474 -0.4264 8.3396 15 6 2.9460 0.1279 9.5699 16 6 2.1860 1.3074 9.6903 17 6 1.9770 1.8908 10.9593 18 1 1.0769 2.4555 11.1524 19 6 2.9360 1.7373 11.9661 20 7 4.1144 1.2463 11.6781 21 14 2.5345 2.2332 13.7218 22 1 1.9525 1.0728 14.4431 23 1 3.7761 2.6709 14.4088 24 1 1.5557 3.3499 13.7093 25 6 1.6304 1.8988 8.5392 26 6 1.8367 1.3286 7.3169 27 6 1.3975 -2.0164 1.3338 28 6 2.2959 -3.1792 1.7605 29 6 1.7939 -3.0897 0.3179 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7292 0.1603 2.6210 34 1 2.1730 1.1278 2.2369 35 1 4.2907 0.4351 3.2434 36 1 1.1197 0.2975 4.9964 37 1 2.5925 1.2753 4.7887 38 1 3.7335 -1.3286 8.2449 39 1 3.3713 -0.3344 10.4484 40 1 4.7793 1.1395 12.3763 41 1 1.0427 2.8008 8.6236 42 1 1.4111 1.7804 6.4332 43 1 0.3679 -2.0180 1.6915 44 1 3.3486 -2.9618 1.9411 45 1 1.8573 -3.9458 2.3992 46 1 1.0253 -3.7975 0.0076 47 1 2.5164 -2.8133 -0.4501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595710026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:58 Heat of formation + Delta-G solvation = -0.468120 kcal Electronic energy + Delta-G solvation = -27369.280497 eV Core-core repulsion = 23518.688426 eV Total energy + Delta-G solvation = -3850.592071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.07438 -38.90611 -37.31405 -36.44512 -35.95809 -35.01338 -33.28544 -31.71117 -30.03678 -29.26600 -28.78560 -25.99980 -24.81472 -24.30868 -22.70293 -22.36002 -20.88144 -20.59215 -20.46920 -18.14501 -17.36158 -17.10450 -16.51559 -16.30709 -16.19135 -15.71669 -15.21240 -15.20603 -14.58814 -14.29704 -13.95318 -13.91513 -13.70008 -13.53000 -13.34767 -13.06017 -12.85654 -12.69550 -12.33628 -12.23484 -12.16389 -12.04742 -11.77404 -11.62092 -11.54291 -11.41509 -11.17490 -11.01883 -10.84834 -10.68569 -10.55701 -10.43545 -10.00765 -9.91648 -9.81755 -9.32725 -9.09931 -8.85180 -7.66842 -6.98444 -6.67791 -4.28778 2.22052 2.47119 2.77163 2.92235 3.09093 3.12028 3.19549 3.25801 3.46364 3.60648 3.89775 3.96677 4.40648 4.43317 4.52337 4.63150 4.64763 4.69542 4.80838 4.85291 4.98642 5.01869 5.10930 5.20618 5.26337 5.32107 5.35762 5.45560 5.56193 5.58110 5.64070 5.80391 5.99058 6.02171 6.04213 6.19907 6.36687 6.57576 6.70722 6.95430 7.09604 7.18771 7.23978 7.44161 7.54613 7.74067 7.75712 8.00232 8.19625 8.43253 8.64422 8.90568 8.97082 10.27511 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.032851 B = 0.001979 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.135025 B =14144.047102 C =14485.179454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.178 3.822 3 H 0.125 0.875 4 C 0.226 3.774 5 N -0.429 5.429 6 N -0.492 5.492 7 C 0.031 3.969 8 C 0.117 3.883 9 H 0.109 0.891 10 O -0.539 6.539 11 C 0.037 3.963 12 O -0.316 6.316 13 C -0.002 4.002 14 C -0.122 4.122 15 C -0.125 4.125 16 C 0.086 3.914 17 C -0.465 4.465 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.808 5.808 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.193 4.193 26 C -0.172 4.172 27 C -0.007 4.007 28 C -0.152 4.152 29 C -0.179 4.179 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.370 0.630 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.279 0.721 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 -1.824 -18.337 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.067 3.933 3 H 0.143 0.857 4 C -0.093 4.093 5 N -0.105 5.105 6 N -0.216 5.216 7 C -0.097 4.097 8 C 0.057 3.943 9 H 0.127 0.873 10 O -0.343 6.343 11 C -0.040 4.040 12 O -0.231 6.231 13 C -0.045 4.045 14 C -0.141 4.141 15 C -0.144 4.144 16 C 0.084 3.916 17 C -0.496 4.496 18 H 0.093 0.907 19 C -0.144 4.144 20 N -0.435 5.435 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.213 4.213 26 C -0.191 4.191 27 C -0.115 4.115 28 C -0.190 4.190 29 C -0.217 4.217 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.216 0.784 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.212 -3.549 -19.660 20.646 hybrid contribution -1.257 1.531 1.218 2.325 sum -6.469 -2.017 -18.442 19.647 Atomic orbital electron populations 1.22439 0.93954 1.03933 1.03948 1.19124 0.94020 0.96897 0.83269 0.85728 1.28772 0.93196 0.93308 0.94024 1.81206 1.08536 1.08639 1.12153 1.61749 1.56998 1.01827 1.01063 1.22781 1.00033 0.97202 0.89691 1.21844 0.82077 1.01221 0.89177 0.87282 1.86652 1.20639 1.32721 1.94251 1.23120 0.97828 0.96224 0.86824 1.85893 1.72801 1.51462 1.12983 1.18643 1.05267 0.97013 0.83619 1.19869 1.02671 1.00581 0.91017 1.21019 1.02133 0.95891 0.95379 1.17612 0.90919 0.90589 0.92451 1.19441 1.04659 1.30050 0.95436 0.90680 1.25852 0.94168 0.93446 1.00889 1.69790 1.03610 1.35282 1.34783 0.86285 0.78763 0.79669 0.81768 1.19438 1.20396 1.18815 1.20620 1.07883 1.00774 0.92021 1.20394 1.03772 0.97385 0.97557 1.22455 0.96799 0.85743 1.06504 1.23126 1.01157 0.98220 0.96454 1.23198 1.03959 1.00604 0.93920 0.90306 0.90970 0.91093 0.92590 0.89322 0.78354 0.92580 0.92848 0.88380 0.85603 0.91014 0.88731 0.88917 0.88651 0.87214 0.88456 0.88790 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.79 8.52 37.16 0.32 -0.48 16 2 C 0.18 1.05 2.77 -70.50 -0.19 0.86 16 3 H 0.13 0.47 7.89 -51.93 -0.41 0.06 16 4 C 0.23 2.02 12.15 -20.76 -0.25 1.76 16 5 N -0.43 -4.98 17.67 42.15 0.74 -4.23 16 6 N -0.49 -3.71 4.51 -222.07 -1.00 -4.71 16 7 C 0.03 0.22 4.21 -3.82 -0.02 0.20 16 8 C 0.12 1.26 3.12 -26.73 -0.08 1.18 16 9 H 0.11 1.30 6.29 -51.93 -0.33 0.98 16 10 O -0.54 -6.64 13.25 -40.08 -0.53 -7.17 16 11 C 0.04 0.51 4.36 37.16 0.16 0.67 16 12 O -0.32 -6.12 10.09 -23.54 -0.24 -6.35 16 13 C 0.00 -0.05 6.71 -38.78 -0.26 -0.31 16 14 C -0.12 -2.92 9.92 -39.83 -0.40 -3.31 16 15 C -0.12 -3.21 8.60 -39.25 -0.34 -3.55 16 16 C 0.09 2.27 5.54 -106.80 -0.59 1.68 16 17 C -0.47 -12.19 9.04 -37.83 -0.34 -12.54 16 18 H 0.08 1.89 7.87 -52.49 -0.41 1.48 16 19 C 0.07 1.80 5.24 -17.34 -0.09 1.71 16 20 N -0.81 -20.89 10.90 55.54 0.61 -20.28 16 21 Si 0.91 18.65 29.57 -169.99 -5.03 13.62 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 25 C -0.19 -4.60 9.74 -39.25 -0.38 -4.99 16 26 C -0.17 -3.71 8.96 -39.83 -0.36 -4.06 16 27 C -0.01 -0.05 2.85 -67.71 -0.19 -0.25 16 28 C -0.15 -1.40 9.15 -26.73 -0.24 -1.65 16 29 C -0.18 -1.58 9.20 -26.73 -0.25 -1.82 16 30 H 0.08 0.27 6.99 -51.93 -0.36 -0.09 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.36 6.71 -51.93 -0.35 0.01 16 33 H 0.06 0.33 7.12 -51.93 -0.37 -0.04 16 34 H 0.09 0.47 7.91 -51.93 -0.41 0.06 16 35 H 0.37 3.38 9.05 45.56 0.41 3.79 16 36 H 0.06 0.71 7.64 -51.93 -0.40 0.31 16 37 H 0.05 0.68 7.65 -51.93 -0.40 0.29 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.13 3.34 6.28 -52.49 -0.33 3.01 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 41 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.09 1.67 6.27 -52.49 -0.33 1.35 16 43 H 0.10 0.66 7.52 -51.93 -0.39 0.27 16 44 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 1.06 5.77 -51.93 -0.30 0.76 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -30.95 385.34 -9.19 -40.15 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.04 Total: 8.07 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -3.51 Total: -24.90 kcal Atomic # 7 Polarization: -29.57 SS G_CDS: 0.35 Total: -29.22 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.77 Total: -13.52 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.95 -9.19 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595710026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.678 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds