Wall clock time and date at job start Tue Mar 31 2020 16:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46875 * 2 1 4 4 C 1.47194 * 109.46969 * 240.00228 * 2 1 3 5 5 N 2.60796 * 109.46963 * 240.00039 * 2 1 3 6 6 N 1.46904 * 109.47062 * 120.00107 * 2 1 3 7 7 C 1.46898 * 110.99769 * 287.96023 * 6 2 1 8 8 C 1.53008 * 109.46647 * 190.00046 * 7 6 2 9 9 H 1.08995 * 109.47219 * 304.99725 * 8 7 6 10 10 O 1.42894 * 109.46916 * 65.00052 * 8 7 6 11 11 C 1.53000 * 109.46711 * 184.99926 * 8 7 6 12 12 O 1.42903 * 109.47183 * 175.00189 * 11 8 7 13 13 C 1.35666 * 117.00428 * 180.02562 * 12 11 8 14 14 C 1.39309 * 119.82017 * 180.02562 * 13 12 11 15 15 C 1.36439 * 120.18921 * 180.25304 * 14 13 12 16 16 C 1.40830 * 119.80651 * 359.45638 * 15 14 13 17 17 C 1.41217 * 120.18015 * 180.25244 * 16 15 14 18 18 H 1.07999 * 120.00456 * 209.49415 * 17 16 15 19 19 C 1.39893 * 119.99710 * 29.49929 * 17 16 15 20 20 N 1.30874 * 120.00315 * 11.08394 * 19 17 16 21 21 Si 1.86802 * 120.00031 * 191.08587 * 19 17 16 22 22 H 1.48508 * 109.47078 * 89.99653 * 21 19 17 23 23 H 1.48495 * 109.47502 * 209.99789 * 21 19 17 24 24 H 1.48506 * 109.47032 * 330.00053 * 21 19 17 25 25 C 1.40835 * 119.64547 * 0.53868 * 16 15 14 26 26 C 1.36439 * 119.80914 * 359.73382 * 25 16 15 27 27 C 1.46897 * 110.99822 * 51.91096 * 6 2 1 28 28 C 1.53005 * 117.49784 * 138.08212 * 27 6 2 29 29 C 1.52999 * 59.99910 * 252.50891 * 28 27 6 30 30 H 1.09003 * 109.46815 * 299.99834 * 1 2 3 31 31 H 1.09001 * 109.47258 * 59.99873 * 1 2 3 32 32 H 1.08995 * 109.47359 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47432 * 69.99981 * 7 6 2 34 34 H 1.08998 * 109.47379 * 309.99435 * 7 6 2 35 35 H 0.96706 * 114.00350 * 60.00225 * 10 8 7 36 36 H 1.08996 * 109.47304 * 54.99954 * 11 8 7 37 37 H 1.09001 * 109.47007 * 294.99565 * 11 8 7 38 38 H 1.08002 * 119.90836 * 359.97023 * 14 13 12 39 39 H 1.07997 * 120.09628 * 179.69738 * 15 14 13 40 40 H 0.97000 * 120.00397 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.09967 * 179.71953 * 25 16 15 42 42 H 1.07996 * 119.91022 * 179.97438 * 26 25 16 43 43 H 1.08997 * 115.55702 * 283.79066 * 27 6 2 44 44 H 1.08998 * 117.49645 * 359.97438 * 28 27 6 45 45 H 1.08998 * 117.49712 * 145.02001 * 28 27 6 46 46 H 1.08999 * 117.49829 * 252.50289 * 29 28 27 47 47 H 1.09002 * 117.49865 * 107.48967 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 7 2.0197 -0.6925 1.1995 7 6 1.7964 0.1186 2.4036 8 6 2.5337 -0.5117 3.5870 9 1 2.2214 -1.5500 3.6983 10 8 3.9424 -0.4605 3.3524 11 6 2.2011 0.2609 4.8650 12 8 2.7952 -0.3956 5.9867 13 6 2.5944 0.1647 7.2058 14 6 3.1474 -0.4264 8.3396 15 6 2.9460 0.1279 9.5699 16 6 2.1860 1.3074 9.6903 17 6 1.9770 1.8908 10.9593 18 1 1.0769 2.4555 11.1524 19 6 2.9360 1.7373 11.9661 20 7 4.1144 1.2463 11.6781 21 14 2.5345 2.2332 13.7218 22 1 1.9525 1.0728 14.4431 23 1 3.7761 2.6709 14.4088 24 1 1.5557 3.3499 13.7093 25 6 1.6304 1.8988 8.5392 26 6 1.8367 1.3286 7.3169 27 6 1.3975 -2.0164 1.3338 28 6 2.2959 -3.1792 1.7605 29 6 1.7939 -3.0897 0.3179 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7292 0.1603 2.6210 34 1 2.1730 1.1278 2.2369 35 1 4.2907 0.4351 3.2434 36 1 1.1197 0.2975 4.9964 37 1 2.5925 1.2753 4.7887 38 1 3.7335 -1.3286 8.2449 39 1 3.3713 -0.3344 10.4484 40 1 4.7793 1.1395 12.3763 41 1 1.0427 2.8008 8.6236 42 1 1.4111 1.7804 6.4332 43 1 0.3679 -2.0180 1.6915 44 1 3.3486 -2.9618 1.9411 45 1 1.8573 -3.9458 2.3992 46 1 1.0253 -3.7975 0.0076 47 1 2.5164 -2.8133 -0.4501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595710026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:57 Heat of formation + Delta-G solvation = -20.913853 kcal Electronic energy + Delta-G solvation = -27370.167090 eV Core-core repulsion = 23518.688426 eV Total energy + Delta-G solvation = -3851.478664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.83533 -40.30909 -38.54680 -37.51199 -37.02323 -35.65782 -35.10084 -32.47307 -31.63717 -30.90325 -29.90456 -27.02686 -26.18767 -25.06621 -23.57088 -23.27703 -22.52541 -22.14873 -21.23342 -19.20567 -18.83211 -18.49117 -17.49991 -17.26209 -16.99772 -16.75095 -16.41252 -15.99347 -15.80963 -15.66587 -15.28160 -14.90359 -14.72107 -14.51842 -14.26191 -14.00421 -13.93130 -13.84761 -13.59517 -13.45672 -13.37103 -13.03010 -12.81848 -12.79013 -12.57812 -12.52885 -12.36693 -12.30151 -12.06580 -11.84004 -11.60459 -11.52627 -11.25110 -11.17292 -11.07886 -10.90644 -10.82266 -9.51771 -9.38229 -8.81002 -8.51660 -6.21769 0.98790 1.06989 1.41693 1.53251 1.55163 1.56211 1.82039 2.25816 2.46752 2.78155 2.79827 2.92134 3.04702 3.66449 3.73498 3.86434 3.95091 4.01244 4.06363 4.15170 4.16511 4.22999 4.33648 4.34951 4.41849 4.46856 4.56126 4.69384 4.73079 4.76628 4.81473 4.91539 4.92618 5.06866 5.10530 5.17944 5.26177 5.27034 5.29548 5.33379 5.63379 5.69115 5.86502 5.91727 6.00068 6.10819 6.31174 6.59725 6.61670 6.86630 7.00402 7.02462 7.15389 8.45184 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.032851 B = 0.001979 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.135025 B =14144.047102 C =14485.179454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.179 3.821 3 H 0.155 0.845 4 C 0.245 3.755 5 N -0.485 5.485 6 N -0.508 5.508 7 C 0.039 3.961 8 C 0.123 3.877 9 H 0.093 0.907 10 O -0.563 6.563 11 C 0.027 3.973 12 O -0.332 6.332 13 C 0.013 3.987 14 C -0.142 4.142 15 C -0.144 4.144 16 C 0.050 3.950 17 C -0.499 4.499 18 H 0.076 0.924 19 C 0.028 3.972 20 N -0.843 5.843 21 Si 0.983 3.017 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.258 1.258 25 C -0.199 4.199 26 C -0.167 4.167 27 C 0.008 3.992 28 C -0.164 4.164 29 C -0.181 4.181 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.383 0.617 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.284 0.716 41 H 0.108 0.892 42 H 0.136 0.864 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 -0.034 -19.283 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.069 3.931 3 H 0.173 0.827 4 C -0.073 4.073 5 N -0.162 5.162 6 N -0.232 5.232 7 C -0.088 4.088 8 C 0.063 3.937 9 H 0.111 0.889 10 O -0.369 6.369 11 C -0.049 4.049 12 O -0.248 6.248 13 C -0.031 4.031 14 C -0.161 4.161 15 C -0.164 4.164 16 C 0.048 3.952 17 C -0.530 4.530 18 H 0.094 0.906 19 C -0.184 4.184 20 N -0.471 5.471 21 Si 0.805 3.195 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.219 4.219 26 C -0.186 4.186 27 C -0.100 4.100 28 C -0.202 4.202 29 C -0.219 4.219 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.231 0.769 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.154 0.846 43 H 0.131 0.869 44 H 0.103 0.897 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.088 -1.752 -20.640 21.894 hybrid contribution -0.649 0.917 1.293 1.712 sum -7.736 -0.835 -19.348 20.854 Atomic orbital electron populations 1.22435 0.92221 1.03849 1.05341 1.19439 0.95213 0.97444 0.81025 0.82729 1.29449 0.91749 0.92128 0.93985 1.81220 1.10434 1.10394 1.14160 1.61613 1.57852 1.01844 1.01917 1.22716 1.00831 0.97653 0.87606 1.21813 0.81900 1.00463 0.89513 0.88874 1.86630 1.21810 1.34173 1.94296 1.23576 0.98693 0.97108 0.85571 1.85894 1.73379 1.52368 1.13143 1.18692 1.03476 0.96467 0.84464 1.20023 1.03416 1.01162 0.91449 1.20904 1.03347 0.96551 0.95598 1.17966 0.92269 0.91252 0.93722 1.19690 1.05327 1.31433 0.96556 0.90629 1.26711 0.93654 0.93126 1.04906 1.69871 1.04549 1.36457 1.36224 0.85185 0.78693 0.79416 0.76254 1.18941 1.19686 1.18148 1.20890 1.07500 1.01213 0.92256 1.20735 1.02826 0.96746 0.98249 1.22549 0.97101 0.85742 1.04651 1.23033 1.00206 0.99909 0.97006 1.23108 1.03842 1.01772 0.93134 0.88413 0.90081 0.91949 0.90312 0.86639 0.76868 0.90776 0.91298 0.87843 0.87609 0.90556 0.87377 0.84597 0.86851 0.89682 0.87874 0.87863 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.82 8.52 71.98 0.61 -0.20 16 2 C 0.18 1.48 2.77 43.11 0.12 1.60 16 3 H 0.16 0.42 7.89 -2.39 -0.02 0.40 16 4 C 0.24 4.00 12.15 89.44 1.09 5.09 16 5 N -0.48 -11.15 17.67 20.00 0.35 -10.80 16 6 N -0.51 -6.06 4.51 -856.51 -3.87 -9.93 16 7 C 0.04 0.37 4.21 86.31 0.36 0.74 16 8 C 0.12 2.29 3.12 30.60 0.10 2.39 16 9 H 0.09 2.05 6.29 -2.39 -0.02 2.03 16 10 O -0.56 -12.81 13.25 -144.35 -1.91 -14.72 16 11 C 0.03 0.62 4.36 71.98 0.31 0.94 16 12 O -0.33 -12.18 10.09 -85.19 -0.86 -13.03 16 13 C 0.01 0.56 6.71 22.79 0.15 0.72 16 14 C -0.14 -6.85 9.92 22.11 0.22 -6.63 16 15 C -0.14 -7.70 8.60 22.48 0.19 -7.51 16 16 C 0.05 2.67 5.54 -21.28 -0.12 2.55 16 17 C -0.50 -26.75 9.04 23.40 0.21 -26.54 16 18 H 0.08 3.87 7.87 -2.91 -0.02 3.84 16 19 C 0.03 1.43 5.24 85.24 0.45 1.88 16 20 N -0.84 -44.96 10.90 21.82 0.24 -44.72 16 21 Si 0.98 38.59 29.57 68.60 2.03 40.61 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 C -0.20 -9.29 9.74 22.49 0.22 -9.07 16 26 C -0.17 -6.76 8.96 22.11 0.20 -6.56 16 27 C 0.01 0.11 2.85 44.92 0.13 0.24 16 28 C -0.16 -2.97 9.15 30.60 0.28 -2.69 16 29 C -0.18 -3.08 9.20 30.59 0.28 -2.80 16 30 H 0.10 0.13 6.99 -2.39 -0.02 0.11 16 31 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.42 6.71 -2.39 -0.02 0.41 16 33 H 0.08 0.45 7.12 -2.39 -0.02 0.44 16 34 H 0.12 0.55 7.91 -2.39 -0.02 0.53 16 35 H 0.38 6.06 9.05 -74.05 -0.67 5.39 16 36 H 0.07 1.51 7.64 -2.39 -0.02 1.49 16 37 H 0.07 1.44 7.65 -2.39 -0.02 1.42 16 38 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.11 5.94 6.28 -2.91 -0.02 5.92 16 40 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 41 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 42 H 0.14 4.25 6.27 -2.91 -0.02 4.23 16 43 H 0.11 1.18 7.52 -2.39 -0.02 1.17 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.08 1.71 5.77 -2.39 -0.01 1.70 16 Total: -1.00 -70.74 385.34 1.11 -69.62 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.33 Total: 28.84 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 4.81 Total: -45.87 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -3.28 Total: -65.46 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -2.77 Total: -27.75 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.61 kcal Total: -70.74 1.11 -69.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595710026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.710 kcal (2) G-P(sol) polarization free energy of solvation -70.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds