Wall clock time and date at job start Tue Mar 31 2020 15:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 C 1.53002 * 109.47261 * 119.99844 * 2 1 3 5 5 H 1.09005 * 109.46636 * 304.37069 * 4 2 1 6 6 C 1.50695 * 109.47058 * 64.36932 * 4 2 1 7 7 O 1.21285 * 120.00288 * 100.71025 * 6 4 2 8 8 N 1.34776 * 120.00258 * 280.70621 * 6 4 2 9 9 C 1.46496 * 120.00197 * 185.31414 * 8 6 4 10 10 H 1.08999 * 109.47249 * 34.99907 * 9 8 6 11 11 C 1.53000 * 109.47037 * 275.00021 * 9 8 6 12 12 C 1.50704 * 109.47434 * 155.00278 * 9 8 6 13 13 H 1.08001 * 119.99901 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00482 * 180.02562 * 12 9 8 15 15 N 1.31521 * 119.99648 * 359.97438 * 14 12 9 16 16 Si 1.86794 * 120.00306 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46994 * 59.99646 * 16 14 12 18 18 H 1.48503 * 109.47154 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47208 * 299.99965 * 16 14 12 20 20 N 1.46504 * 109.47400 * 184.37235 * 4 2 1 21 21 C 1.46732 * 125.62302 * 125.05963 * 20 4 2 22 22 C 1.50834 * 106.24621 * 179.88826 * 21 20 4 23 23 C 1.37579 * 133.23400 * 180.02562 * 22 21 20 24 24 C 1.38477 * 119.95404 * 180.33310 * 23 22 21 25 25 C 1.38381 * 120.18574 * 0.04278 * 24 23 22 26 26 C 1.37945 * 120.32694 * 359.97438 * 25 24 23 27 27 C 1.39628 * 119.82178 * 359.97438 * 26 25 24 28 28 C 1.34425 * 125.61872 * 305.37131 * 20 4 2 29 29 O 1.21541 * 124.85836 * 359.93666 * 28 20 4 30 30 H 1.08999 * 109.46951 * 57.50485 * 1 2 3 31 31 H 1.08993 * 109.47407 * 297.49830 * 1 2 3 32 32 H 1.09003 * 109.46917 * 177.49763 * 1 2 3 33 33 H 1.09001 * 109.47384 * 239.99505 * 2 1 3 34 34 H 1.08997 * 109.47296 * 65.23678 * 3 2 1 35 35 H 1.09004 * 109.46790 * 185.23614 * 3 2 1 36 36 H 1.09000 * 109.47040 * 305.23280 * 3 2 1 37 37 H 0.97001 * 119.99877 * 5.30943 * 8 6 4 38 38 H 1.09002 * 109.47049 * 180.02562 * 11 9 8 39 39 H 1.09012 * 109.46935 * 299.99767 * 11 9 8 40 40 H 1.08995 * 109.47484 * 59.99820 * 11 9 8 41 41 H 0.97000 * 119.99698 * 180.02562 * 15 14 12 42 42 H 1.09000 * 110.09996 * 299.21504 * 21 20 4 43 43 H 1.09002 * 110.09654 * 60.82837 * 21 20 4 44 44 H 1.07995 * 120.02580 * 0.33335 * 23 22 21 45 45 H 1.07997 * 119.90685 * 180.02562 * 24 23 22 46 46 H 1.08000 * 119.83928 * 180.02562 * 25 24 23 47 47 H 1.07994 * 120.09177 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6141 -0.2545 2.1375 6 6 1.6280 -2.1698 1.1964 7 8 2.4274 -3.0156 0.8547 8 7 0.3713 -2.5256 1.5288 9 6 0.0030 -3.9422 1.5902 10 1 0.8507 -4.5225 1.9545 11 6 -0.3854 -4.4292 0.1927 12 6 -1.1652 -4.1175 2.5260 13 1 -1.5905 -3.2595 3.0254 14 6 -1.6904 -5.3733 2.7454 15 7 -1.1722 -6.4182 2.1376 16 14 -3.1380 -5.5906 3.9058 17 1 -4.2931 -4.8002 3.4096 18 1 -3.5113 -7.0266 3.9679 19 1 -2.7606 -5.1177 5.2619 20 7 3.5013 -0.6307 1.3031 21 6 4.2841 -0.1048 2.4272 22 6 5.7327 -0.2180 2.0221 23 6 6.9142 0.1070 2.6475 24 6 8.1204 -0.1133 2.0041 25 6 8.1413 -0.6590 0.7326 26 6 6.9623 -0.9881 0.0965 27 6 5.7421 -0.7699 0.7392 28 6 4.3456 -1.0104 0.3284 29 8 4.0071 -1.4852 -0.7379 30 1 -0.3633 0.5521 -0.8668 31 1 -0.3634 0.4745 0.9115 32 1 -0.3633 -1.0267 -0.0449 33 1 1.8934 -0.5139 -0.8899 34 1 1.7552 1.9286 0.9331 35 1 3.1259 1.4439 -0.0938 36 1 1.6020 1.9827 -0.8394 37 1 -0.2893 -1.8437 1.7275 38 1 -0.6599 -5.4831 0.2385 39 1 -1.2332 -3.8488 -0.1716 40 1 0.4594 -4.3024 -0.4841 41 1 -1.5419 -7.3016 2.2917 42 1 4.0244 0.9381 2.6091 43 1 4.1000 -0.6989 3.3223 44 1 6.9010 0.5337 3.6395 45 1 9.0475 0.1417 2.4958 46 1 9.0852 -0.8289 0.2361 47 1 6.9830 -1.4142 -0.8957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:38 Heat of formation + Delta-G solvation = -31.169009 kcal Electronic energy + Delta-G solvation = -29111.292793 eV Core-core repulsion = 25259.369432 eV Total energy + Delta-G solvation = -3851.923361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28638 -39.28014 -37.80428 -36.18260 -35.20200 -34.72177 -32.30726 -31.28578 -31.10998 -29.21212 -27.19554 -27.01680 -26.56651 -25.21944 -23.27138 -21.89707 -21.49386 -20.67219 -19.73835 -19.19372 -17.54768 -16.94609 -16.34030 -16.24983 -15.95506 -15.42949 -15.11628 -14.67470 -14.45306 -14.37770 -14.23450 -13.72240 -13.43447 -13.32623 -13.23944 -13.05591 -12.68994 -12.56329 -12.48518 -12.29008 -12.12044 -12.01339 -11.73668 -11.26194 -11.16447 -11.11519 -11.00593 -10.90368 -10.77531 -10.60716 -10.30529 -10.20507 -9.55103 -9.40642 -9.14544 -9.03108 -8.97023 -8.55521 -8.34950 -7.85544 -6.10576 -4.20589 0.70978 1.10788 2.69288 2.93879 3.25291 3.30775 3.31702 3.39183 3.77243 3.95942 4.14567 4.35823 4.42542 4.69865 4.76541 4.84215 4.93212 5.07672 5.12941 5.18697 5.21279 5.21649 5.28208 5.32047 5.49989 5.56063 5.61329 5.71000 5.74922 5.83332 5.90759 6.06077 6.09190 6.10726 6.19483 6.35613 6.37184 6.62044 6.64594 6.88133 7.05153 7.17014 7.20868 7.50349 7.58691 7.70979 7.94759 8.18234 8.39024 8.68269 8.79939 9.15471 9.47059 10.95129 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.003206 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.227022 B = 8732.449349 C = 9310.750272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.156 3.844 5 H 0.107 0.893 6 C 0.489 3.511 7 O -0.527 6.527 8 N -0.709 5.709 9 C 0.268 3.732 10 H 0.045 0.955 11 C -0.147 4.147 12 C -0.535 4.535 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.882 5.882 16 Si 0.902 3.098 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 N -0.600 5.600 21 C 0.143 3.857 22 C -0.083 4.083 23 C -0.104 4.104 24 C -0.095 4.095 25 C -0.129 4.129 26 C -0.049 4.049 27 C -0.146 4.146 28 C 0.566 3.434 29 O -0.499 6.499 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.388 0.612 38 H 0.088 0.912 39 H 0.025 0.975 40 H 0.017 0.983 41 H 0.265 0.735 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.315 18.561 1.047 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.125 4.125 3 C -0.194 4.194 4 C 0.050 3.950 5 H 0.125 0.875 6 C 0.271 3.729 7 O -0.403 6.403 8 N -0.359 5.359 9 C 0.167 3.833 10 H 0.063 0.937 11 C -0.205 4.205 12 C -0.573 4.573 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.729 3.271 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.202 1.202 20 N -0.333 5.333 21 C 0.020 3.980 22 C -0.084 4.084 23 C -0.122 4.122 24 C -0.113 4.113 25 C -0.147 4.147 26 C -0.068 4.068 27 C -0.149 4.149 28 C 0.354 3.646 29 O -0.374 6.374 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.221 0.779 38 H 0.107 0.893 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.554 17.420 0.222 22.073 hybrid contribution -1.085 0.047 0.887 1.403 sum 12.468 17.468 1.109 21.490 Atomic orbital electron populations 1.22011 0.93727 1.03620 1.02189 1.21399 0.96531 0.96355 0.98181 1.21740 1.00954 0.95104 1.01607 1.21031 0.77960 0.95398 1.00652 0.87525 1.20561 0.83571 0.89930 0.78816 1.90716 1.51885 1.51698 1.45993 1.46639 1.09919 1.11287 1.68064 1.18701 0.95832 0.75186 0.93616 0.93739 1.22065 0.97504 1.04006 0.96970 1.21178 1.15648 0.93727 1.26754 0.92160 1.24893 0.97138 0.95682 0.95984 1.69908 1.41045 0.99085 1.41934 0.86513 0.82346 0.77176 0.81073 1.20149 1.21149 1.20205 1.47448 1.04829 1.63728 1.17299 1.20460 0.86663 1.00310 0.90551 1.20481 0.94828 0.98006 0.95125 1.20276 0.90409 1.01333 1.00209 1.21274 0.97657 0.97530 0.94841 1.21114 0.97910 1.00108 0.95549 1.20896 0.90206 0.95905 0.99835 1.20570 0.94638 1.03237 0.96471 1.18021 0.85049 0.77602 0.83978 1.90763 1.81264 1.41956 1.23378 0.91861 0.92265 0.90869 0.88826 0.92743 0.92989 0.92357 0.77879 0.89305 0.95551 0.96434 0.92525 0.88775 0.88790 0.85240 0.85182 0.85179 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.23 37.16 0.31 -1.66 16 2 C -0.10 -1.47 2.21 -90.62 -0.20 -1.67 16 3 C -0.14 -1.51 8.89 37.16 0.33 -1.17 16 4 C 0.16 2.38 2.33 -69.08 -0.16 2.22 16 5 H 0.11 1.28 8.10 -51.93 -0.42 0.86 16 6 C 0.49 10.16 6.60 -10.99 -0.07 10.09 16 7 O -0.53 -13.57 14.42 -10.85 -0.16 -13.73 16 8 N -0.71 -14.86 4.07 -54.93 -0.22 -15.08 16 9 C 0.27 6.95 2.52 -69.08 -0.17 6.77 16 10 H 0.04 1.34 7.66 -51.93 -0.40 0.94 16 11 C -0.15 -3.80 9.26 37.16 0.34 -3.46 16 12 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 15 N -0.88 -25.21 11.32 55.43 0.63 -24.58 16 16 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 N -0.60 -9.06 1.96 -169.86 -0.33 -9.40 16 21 C 0.14 1.56 7.36 -5.00 -0.04 1.53 16 22 C -0.08 -0.95 6.38 -104.26 -0.66 -1.61 16 23 C -0.10 -0.91 10.03 -39.73 -0.40 -1.30 16 24 C -0.09 -0.76 10.05 -39.44 -0.40 -1.16 16 25 C -0.13 -1.18 10.02 -39.64 -0.40 -1.57 16 26 C -0.05 -0.60 10.10 -39.17 -0.40 -1.00 16 27 C -0.15 -2.10 6.26 -105.05 -0.66 -2.76 16 28 C 0.57 10.05 6.30 -12.62 -0.08 9.97 16 29 O -0.50 -10.86 15.29 -11.07 -0.17 -11.03 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.10 6.00 -51.93 -0.31 0.78 16 33 H 0.09 1.65 6.74 -51.93 -0.35 1.30 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.62 7.31 -51.93 -0.38 0.24 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.39 6.93 6.98 -40.82 -0.28 6.64 16 38 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 39 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 40 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -35.36 380.72 -9.66 -45.02 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.07 Total: 7.00 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -3.05 Total: 0.43 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.07 Total: -49.06 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.33 Total: -24.76 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.36 -9.66 -45.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.851 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds