Wall clock time and date at job start Tue Mar 31 2020 15:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 C 1.53002 * 109.47261 * 119.99844 * 2 1 3 5 5 H 1.09005 * 109.46636 * 304.37069 * 4 2 1 6 6 C 1.50695 * 109.47058 * 64.36932 * 4 2 1 7 7 O 1.21285 * 120.00288 * 100.71025 * 6 4 2 8 8 N 1.34776 * 120.00258 * 280.70621 * 6 4 2 9 9 C 1.46496 * 120.00197 * 185.31414 * 8 6 4 10 10 H 1.08999 * 109.47249 * 34.99907 * 9 8 6 11 11 C 1.53000 * 109.47037 * 275.00021 * 9 8 6 12 12 C 1.50704 * 109.47434 * 155.00278 * 9 8 6 13 13 H 1.08001 * 119.99901 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00482 * 180.02562 * 12 9 8 15 15 N 1.31521 * 119.99648 * 359.97438 * 14 12 9 16 16 Si 1.86794 * 120.00306 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46994 * 59.99646 * 16 14 12 18 18 H 1.48503 * 109.47154 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47208 * 299.99965 * 16 14 12 20 20 N 1.46504 * 109.47400 * 184.37235 * 4 2 1 21 21 C 1.46732 * 125.62302 * 125.05963 * 20 4 2 22 22 C 1.50834 * 106.24621 * 179.88826 * 21 20 4 23 23 C 1.37579 * 133.23400 * 180.02562 * 22 21 20 24 24 C 1.38477 * 119.95404 * 180.33310 * 23 22 21 25 25 C 1.38381 * 120.18574 * 0.04278 * 24 23 22 26 26 C 1.37945 * 120.32694 * 359.97438 * 25 24 23 27 27 C 1.39628 * 119.82178 * 359.97438 * 26 25 24 28 28 C 1.34425 * 125.61872 * 305.37131 * 20 4 2 29 29 O 1.21541 * 124.85836 * 359.93666 * 28 20 4 30 30 H 1.08999 * 109.46951 * 57.50485 * 1 2 3 31 31 H 1.08993 * 109.47407 * 297.49830 * 1 2 3 32 32 H 1.09003 * 109.46917 * 177.49763 * 1 2 3 33 33 H 1.09001 * 109.47384 * 239.99505 * 2 1 3 34 34 H 1.08997 * 109.47296 * 65.23678 * 3 2 1 35 35 H 1.09004 * 109.46790 * 185.23614 * 3 2 1 36 36 H 1.09000 * 109.47040 * 305.23280 * 3 2 1 37 37 H 0.97001 * 119.99877 * 5.30943 * 8 6 4 38 38 H 1.09002 * 109.47049 * 180.02562 * 11 9 8 39 39 H 1.09012 * 109.46935 * 299.99767 * 11 9 8 40 40 H 1.08995 * 109.47484 * 59.99820 * 11 9 8 41 41 H 0.97000 * 119.99698 * 180.02562 * 15 14 12 42 42 H 1.09000 * 110.09996 * 299.21504 * 21 20 4 43 43 H 1.09002 * 110.09654 * 60.82837 * 21 20 4 44 44 H 1.07995 * 120.02580 * 0.33335 * 23 22 21 45 45 H 1.07997 * 119.90685 * 180.02562 * 24 23 22 46 46 H 1.08000 * 119.83928 * 180.02562 * 25 24 23 47 47 H 1.07994 * 120.09177 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6141 -0.2545 2.1375 6 6 1.6280 -2.1698 1.1964 7 8 2.4274 -3.0156 0.8547 8 7 0.3713 -2.5256 1.5288 9 6 0.0030 -3.9422 1.5902 10 1 0.8507 -4.5225 1.9545 11 6 -0.3854 -4.4292 0.1927 12 6 -1.1652 -4.1175 2.5260 13 1 -1.5905 -3.2595 3.0254 14 6 -1.6904 -5.3733 2.7454 15 7 -1.1722 -6.4182 2.1376 16 14 -3.1380 -5.5906 3.9058 17 1 -4.2931 -4.8002 3.4096 18 1 -3.5113 -7.0266 3.9679 19 1 -2.7606 -5.1177 5.2619 20 7 3.5013 -0.6307 1.3031 21 6 4.2841 -0.1048 2.4272 22 6 5.7327 -0.2180 2.0221 23 6 6.9142 0.1070 2.6475 24 6 8.1204 -0.1133 2.0041 25 6 8.1413 -0.6590 0.7326 26 6 6.9623 -0.9881 0.0965 27 6 5.7421 -0.7699 0.7392 28 6 4.3456 -1.0104 0.3284 29 8 4.0071 -1.4852 -0.7379 30 1 -0.3633 0.5521 -0.8668 31 1 -0.3634 0.4745 0.9115 32 1 -0.3633 -1.0267 -0.0449 33 1 1.8934 -0.5139 -0.8899 34 1 1.7552 1.9286 0.9331 35 1 3.1259 1.4439 -0.0938 36 1 1.6020 1.9827 -0.8394 37 1 -0.2893 -1.8437 1.7275 38 1 -0.6599 -5.4831 0.2385 39 1 -1.2332 -3.8488 -0.1716 40 1 0.4594 -4.3024 -0.4841 41 1 -1.5419 -7.3016 2.2917 42 1 4.0244 0.9381 2.6091 43 1 4.1000 -0.6989 3.3223 44 1 6.9010 0.5337 3.6395 45 1 9.0475 0.1417 2.4958 46 1 9.0852 -0.8289 0.2361 47 1 6.9830 -1.4142 -0.8957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596998094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:37 Heat of formation + Delta-G solvation = -53.377108 kcal Electronic energy + Delta-G solvation = -29112.255808 eV Core-core repulsion = 25259.369432 eV Total energy + Delta-G solvation = -3852.886377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.38887 -40.69826 -39.00806 -37.51365 -36.71519 -36.24519 -34.26993 -32.19122 -31.99214 -31.09846 -28.38453 -27.96664 -27.59424 -27.35679 -24.35427 -23.15433 -22.74682 -21.70426 -21.44983 -20.58657 -19.10885 -18.15142 -17.71233 -17.46846 -17.15131 -16.83043 -16.66189 -16.04619 -15.89405 -15.51288 -15.28165 -15.04769 -14.78844 -14.50818 -14.46161 -14.27333 -14.03924 -13.82004 -13.76241 -13.60600 -13.34269 -13.03497 -12.97855 -12.93382 -12.76930 -12.73722 -12.30540 -12.20308 -12.16149 -12.06787 -12.02462 -11.81867 -11.15081 -10.97443 -10.74851 -10.61279 -10.07367 -9.87219 -9.76274 -9.57894 -8.18016 -6.37162 -0.17188 0.34956 1.44306 1.47755 1.52049 1.56139 1.80879 1.90689 2.35539 2.60387 2.86439 3.11809 3.15816 3.42478 3.72457 3.79686 3.88397 3.93846 4.16946 4.18635 4.25656 4.34347 4.45744 4.49951 4.54918 4.60369 4.68933 4.78247 4.78964 4.86403 4.90781 4.94057 5.00911 5.06155 5.15190 5.18211 5.34375 5.37293 5.38331 5.38661 5.45998 5.57742 5.59506 5.64249 5.87820 5.92008 6.02115 6.05939 6.70740 6.90936 7.16609 7.30996 7.53740 8.88408 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.003206 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.227022 B = 8732.449349 C = 9310.750272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 C -0.126 4.126 4 C 0.163 3.837 5 H 0.155 0.845 6 C 0.482 3.518 7 O -0.586 6.586 8 N -0.699 5.699 9 C 0.277 3.723 10 H -0.010 1.010 11 C -0.132 4.132 12 C -0.545 4.545 13 H 0.080 0.920 14 C 0.011 3.989 15 N -0.922 5.922 16 Si 0.977 3.023 17 H -0.262 1.262 18 H -0.289 1.289 19 H -0.266 1.266 20 N -0.601 5.601 21 C 0.137 3.863 22 C -0.082 4.082 23 C -0.098 4.098 24 C -0.080 4.080 25 C -0.127 4.127 26 C -0.073 4.073 27 C -0.193 4.193 28 C 0.548 3.452 29 O -0.565 6.565 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.407 0.593 38 H 0.066 0.934 39 H 0.041 0.959 40 H -0.002 1.002 41 H 0.265 0.735 42 H 0.139 0.861 43 H 0.104 0.896 44 H 0.169 0.831 45 H 0.172 0.828 46 H 0.157 0.843 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.365 22.459 4.622 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.120 4.120 3 C -0.183 4.183 4 C 0.057 3.943 5 H 0.172 0.828 6 C 0.267 3.733 7 O -0.466 6.466 8 N -0.350 5.350 9 C 0.173 3.827 10 H 0.008 0.992 11 C -0.191 4.191 12 C -0.583 4.583 13 H 0.098 0.902 14 C -0.189 4.189 15 N -0.560 5.560 16 Si 0.801 3.199 17 H -0.186 1.186 18 H -0.215 1.215 19 H -0.191 1.191 20 N -0.332 5.332 21 C 0.016 3.984 22 C -0.084 4.084 23 C -0.115 4.115 24 C -0.098 4.098 25 C -0.145 4.145 26 C -0.092 4.092 27 C -0.196 4.196 28 C 0.338 3.662 29 O -0.445 6.445 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.244 0.756 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.018 0.982 41 H 0.074 0.926 42 H 0.157 0.843 43 H 0.122 0.878 44 H 0.187 0.813 45 H 0.190 0.810 46 H 0.175 0.825 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.595 21.397 3.841 25.640 hybrid contribution -0.958 -1.187 -0.246 1.545 sum 12.637 20.210 3.595 24.105 Atomic orbital electron populations 1.21999 0.92265 1.02212 1.04683 1.21343 0.97647 0.97706 0.95335 1.21665 0.99946 0.92782 1.03895 1.21115 0.78764 0.91159 1.03299 0.82773 1.21667 0.82547 0.92239 0.76810 1.90694 1.53446 1.54179 1.48258 1.46341 1.10892 1.09745 1.68013 1.18260 0.93945 0.77370 0.93125 0.99234 1.21890 0.97185 1.02865 0.97125 1.21512 1.15431 0.94586 1.26760 0.90171 1.25898 1.00098 0.95264 0.97602 1.70086 1.42720 0.99623 1.43555 0.85321 0.78717 0.76941 0.78906 1.18628 1.21515 1.19090 1.47643 1.04772 1.62835 1.17990 1.20850 0.85969 1.02651 0.88939 1.20717 0.96118 0.97749 0.93775 1.20763 0.89258 1.00025 1.01496 1.21827 0.99190 0.94953 0.93851 1.21451 0.97498 0.99240 0.96297 1.21036 0.91181 0.97149 0.99833 1.20535 0.93333 1.06869 0.98855 1.18802 0.87077 0.76669 0.83613 1.90704 1.82581 1.45119 1.26060 0.90479 0.88755 0.94019 0.93833 0.89288 0.94436 0.91311 0.75634 0.91569 0.93946 0.98239 0.92609 0.84335 0.87790 0.81328 0.81050 0.82520 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.23 71.98 0.59 -3.00 16 2 C -0.10 -2.80 2.21 -10.79 -0.02 -2.82 16 3 C -0.13 -2.50 8.89 71.98 0.64 -1.86 16 4 C 0.16 4.89 2.33 44.24 0.10 5.00 16 5 H 0.15 3.13 8.10 -2.38 -0.02 3.11 16 6 C 0.48 20.96 6.60 87.66 0.58 21.54 16 7 O -0.59 -32.77 14.42 12.64 0.18 -32.59 16 8 N -0.70 -30.00 4.07 -446.10 -1.82 -31.81 16 9 C 0.28 15.00 2.52 44.25 0.11 15.11 16 10 H -0.01 -0.66 7.66 -2.39 -0.02 -0.68 16 11 C -0.13 -7.25 9.26 71.98 0.67 -6.58 16 12 C -0.54 -29.03 8.73 25.60 0.22 -28.80 16 13 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 14 C 0.01 0.61 5.30 84.65 0.45 1.05 16 15 N -0.92 -54.42 11.32 21.45 0.24 -54.18 16 16 Si 0.98 41.93 29.54 68.60 2.03 43.96 16 17 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 18 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 20 N -0.60 -18.26 1.96 -809.78 -1.59 -19.85 16 21 C 0.14 2.66 7.36 85.63 0.63 3.29 16 22 C -0.08 -1.73 6.38 -19.63 -0.13 -1.86 16 23 C -0.10 -1.30 10.03 22.17 0.22 -1.08 16 24 C -0.08 -0.96 10.05 22.36 0.22 -0.74 16 25 C -0.13 -2.11 10.02 22.23 0.22 -1.88 16 26 C -0.07 -1.89 10.10 22.54 0.23 -1.66 16 27 C -0.19 -5.80 6.26 -20.14 -0.13 -5.92 16 28 C 0.55 20.98 6.30 86.75 0.55 21.53 16 29 O -0.57 -27.53 15.29 11.84 0.18 -27.35 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.24 6.00 -2.39 -0.01 1.22 16 33 H 0.04 1.67 6.74 -2.39 -0.02 1.65 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.04 0.86 7.31 -2.38 -0.02 0.84 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.41 14.16 6.98 -92.71 -0.65 13.51 16 38 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 39 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 41 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 45 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 46 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 47 H 0.11 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -88.56 380.72 4.72 -83.84 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.33 Total: 26.68 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.16 Total: 11.31 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -3.16 Total: -105.84 kcal Atomic # 8 Polarization: -60.31 SS G_CDS: 0.36 Total: -59.94 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -88.56 4.72 -83.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.463 kcal (2) G-P(sol) polarization free energy of solvation -88.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds