Wall clock time and date at job start Tue Mar 31 2020 15:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47085 * 2 1 4 4 C 1.52996 * 109.47190 * 120.00547 * 2 1 3 5 5 H 1.09000 * 109.46891 * 304.04308 * 4 2 1 6 6 C 1.50697 * 109.47489 * 64.04606 * 4 2 1 7 7 O 1.21279 * 120.00213 * 96.57149 * 6 4 2 8 8 N 1.34781 * 119.99539 * 276.57668 * 6 4 2 9 9 C 1.46502 * 119.99423 * 175.25362 * 8 6 4 10 10 H 1.08997 * 109.47324 * 324.99832 * 9 8 6 11 11 C 1.53002 * 109.47208 * 85.00005 * 9 8 6 12 12 C 1.50702 * 109.46847 * 204.99656 * 9 8 6 13 13 H 1.08003 * 120.00148 * 0.02562 * 12 9 8 14 14 C 1.37885 * 119.99976 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99712 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99953 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47354 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47190 * 120.00407 * 16 14 12 19 19 H 1.48505 * 109.46967 * 240.00175 * 16 14 12 20 20 N 1.46501 * 109.46950 * 184.04896 * 4 2 1 21 21 C 1.46732 * 125.62646 * 119.71444 * 20 4 2 22 22 C 1.50827 * 106.25355 * 179.88299 * 21 20 4 23 23 C 1.37575 * 133.23937 * 180.02562 * 22 21 20 24 24 C 1.38474 * 119.95408 * 180.33755 * 23 22 21 25 25 C 1.38389 * 120.19077 * 0.03925 * 24 23 22 26 26 C 1.37938 * 120.31683 * 359.97438 * 25 24 23 27 27 C 1.39620 * 119.83066 * 359.97438 * 26 25 24 28 28 C 1.34419 * 125.62441 * 300.01887 * 20 4 2 29 29 O 1.21559 * 124.85426 * 359.94496 * 28 20 4 30 30 H 1.08998 * 109.46564 * 294.61711 * 1 2 3 31 31 H 1.09002 * 109.46887 * 54.61433 * 1 2 3 32 32 H 1.08994 * 109.47133 * 174.61728 * 1 2 3 33 33 H 1.08996 * 109.46715 * 240.00470 * 2 1 3 34 34 H 1.09003 * 109.47217 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47454 * 300.00265 * 3 2 1 36 36 H 1.09004 * 109.46747 * 60.00355 * 3 2 1 37 37 H 0.96996 * 120.00527 * 355.25082 * 8 6 4 38 38 H 1.09005 * 109.47230 * 180.02562 * 11 9 8 39 39 H 1.08999 * 109.46789 * 299.99741 * 11 9 8 40 40 H 1.08997 * 109.47119 * 59.99702 * 11 9 8 41 41 H 0.97000 * 120.00011 * 179.97438 * 15 14 12 42 42 H 1.08997 * 110.10129 * 299.22223 * 21 20 4 43 43 H 1.09000 * 110.09605 * 60.82400 * 21 20 4 44 44 H 1.07995 * 120.02361 * 0.33764 * 23 22 21 45 45 H 1.07998 * 119.90770 * 180.02562 * 24 23 22 46 46 H 1.07991 * 119.83891 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.08120 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6188 -0.2511 2.1377 6 6 1.6213 -2.1681 1.2000 7 8 2.3916 -3.0087 0.7865 8 7 0.3907 -2.5279 1.6155 9 6 -0.0542 -3.9163 1.4713 10 1 0.3586 -4.3368 0.5544 11 6 0.4297 -4.7340 2.6705 12 6 -1.5594 -3.9575 1.4097 13 1 -2.1278 -3.0412 1.4713 14 6 -2.2110 -5.1651 1.2737 15 7 -1.5189 -6.2808 1.1982 16 14 -4.0767 -5.2162 1.1966 17 1 -4.6145 -3.8359 1.3017 18 1 -4.5026 -5.8159 -0.0934 19 1 -4.5962 -6.0372 2.3197 20 7 3.5018 -0.6374 1.2989 21 6 4.2862 -0.0135 2.3705 22 6 5.7347 -0.1758 1.9829 23 6 6.9173 0.1978 2.5784 24 6 8.1233 -0.0918 1.9626 25 6 8.1430 -0.7557 0.7485 26 6 6.9630 -1.1344 0.1428 27 6 5.7430 -0.8469 0.7580 28 6 4.3456 -1.1143 0.3674 29 8 4.0059 -1.6854 -0.6505 30 1 -0.3632 0.4281 0.9343 31 1 -0.3633 0.5951 -0.8379 32 1 -0.3633 -1.0231 -0.0964 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 -0.2004 -1.8677 2.0099 38 1 0.0990 -5.7671 2.5631 39 1 1.5183 -4.7041 2.7151 40 1 0.0168 -4.3135 3.5875 41 1 -1.9772 -7.1304 1.1028 42 1 4.0343 1.0438 2.4522 43 1 4.0951 -0.5187 3.3173 44 1 6.9051 0.7165 3.5255 45 1 9.0512 0.2014 2.4310 46 1 9.0867 -0.9783 0.2731 47 1 6.9828 -1.6527 -0.8045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:43 Heat of formation + Delta-G solvation = -31.528881 kcal Electronic energy + Delta-G solvation = -29124.601694 eV Core-core repulsion = 25272.662727 eV Total energy + Delta-G solvation = -3851.938966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.27209 -39.25252 -37.75882 -36.19684 -35.12687 -34.70383 -32.29054 -31.28832 -31.10728 -29.20918 -27.21012 -26.94492 -26.55150 -25.22193 -23.25911 -21.88767 -21.51584 -20.63104 -19.70784 -19.15833 -17.53113 -16.91864 -16.32332 -16.24413 -15.97902 -15.38108 -15.10598 -14.66431 -14.48810 -14.32249 -14.21682 -13.72643 -13.34967 -13.28870 -13.25749 -13.07755 -12.62993 -12.53280 -12.46085 -12.32077 -12.09395 -12.00634 -11.64189 -11.26735 -11.20908 -11.06740 -10.97586 -10.86330 -10.72887 -10.67741 -10.26514 -10.21827 -9.55296 -9.36427 -9.13588 -9.01817 -8.97001 -8.53894 -8.32318 -7.83847 -6.09782 -4.19158 0.71163 1.10123 2.70252 2.95232 3.24700 3.32152 3.34516 3.41873 3.78784 3.96022 4.16657 4.35791 4.44057 4.69205 4.76403 4.87488 4.93709 5.06661 5.15735 5.18115 5.21627 5.22490 5.26813 5.31869 5.51105 5.59677 5.64395 5.73882 5.75051 5.86929 5.96184 6.07465 6.09331 6.13959 6.19275 6.39343 6.48112 6.62462 6.65813 6.86114 7.00341 7.18890 7.19856 7.50785 7.59596 7.71901 7.95089 8.18079 8.43382 8.69936 8.81985 9.17973 9.48560 10.96168 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.003153 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.710551 B = 8878.176437 C = 9551.229124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 C -0.138 4.138 4 C 0.157 3.843 5 H 0.104 0.896 6 C 0.488 3.512 7 O -0.522 6.522 8 N -0.708 5.708 9 C 0.267 3.733 10 H 0.047 0.953 11 C -0.146 4.146 12 C -0.532 4.532 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.883 5.883 16 Si 0.901 3.099 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.603 5.603 21 C 0.144 3.856 22 C -0.085 4.085 23 C -0.104 4.104 24 C -0.096 4.096 25 C -0.128 4.128 26 C -0.050 4.050 27 C -0.145 4.145 28 C 0.561 3.439 29 O -0.489 6.489 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.387 0.613 38 H 0.089 0.911 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.534 18.313 4.140 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.123 4.123 3 C -0.195 4.195 4 C 0.051 3.949 5 H 0.122 0.878 6 C 0.270 3.730 7 O -0.397 6.397 8 N -0.358 5.358 9 C 0.166 3.834 10 H 0.064 0.936 11 C -0.204 4.204 12 C -0.570 4.570 13 H 0.080 0.920 14 C -0.138 4.138 15 N -0.520 5.520 16 Si 0.728 3.272 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.337 5.337 21 C 0.021 3.979 22 C -0.086 4.086 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.146 4.146 26 C -0.069 4.069 27 C -0.148 4.148 28 C 0.349 3.651 29 O -0.362 6.362 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.219 0.781 38 H 0.107 0.893 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.739 17.131 3.234 22.829 hybrid contribution -1.258 0.140 0.356 1.315 sum 13.481 17.271 3.590 22.202 Atomic orbital electron populations 1.21955 0.93442 1.03955 1.01893 1.21383 0.96742 0.96158 0.98020 1.21762 1.00916 0.95196 1.01657 1.21003 0.77859 0.95526 1.00510 0.87809 1.20522 0.83336 0.89727 0.79402 1.90744 1.51667 1.51821 1.45505 1.46556 1.14219 1.13905 1.61116 1.18710 0.93768 0.75421 0.95524 0.93551 1.22061 0.96473 1.04057 0.97850 1.21248 0.90493 0.93339 1.51925 0.92007 1.24897 0.98699 0.95419 0.94744 1.69920 1.35273 0.97939 1.48881 0.86410 0.84953 0.78122 0.77692 1.19720 1.20909 1.20930 1.47496 1.04771 1.59032 1.22442 1.20438 0.86670 0.99115 0.91667 1.20483 0.94812 0.97827 0.95493 1.20267 0.90412 1.01249 1.00310 1.21271 0.97657 0.97328 0.95128 1.21116 0.97911 0.99551 0.96056 1.20904 0.90212 0.96297 0.99470 1.20598 0.94695 1.02346 0.97170 1.18042 0.85004 0.78485 0.83574 1.90803 1.81128 1.38840 1.25441 0.92488 0.92073 0.90538 0.89159 0.92936 0.92392 0.92744 0.78089 0.89256 0.96737 0.95601 0.92662 0.88854 0.88974 0.85284 0.85206 0.85184 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.38 37.16 0.31 -1.74 16 2 C -0.10 -1.48 2.31 -90.62 -0.21 -1.69 16 3 C -0.14 -1.53 8.99 37.16 0.33 -1.19 16 4 C 0.16 2.39 2.31 -69.08 -0.16 2.23 16 5 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 6 C 0.49 10.11 6.45 -10.98 -0.07 10.04 16 7 O -0.52 -13.48 13.80 -15.83 -0.22 -13.70 16 8 N -0.71 -14.75 3.87 -54.93 -0.21 -14.97 16 9 C 0.27 6.91 2.52 -69.08 -0.17 6.74 16 10 H 0.05 1.41 7.65 -51.93 -0.40 1.02 16 11 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 12 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 15 N -0.88 -25.27 11.32 55.43 0.63 -24.65 16 16 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 N -0.60 -9.02 1.87 -169.87 -0.32 -9.34 16 21 C 0.14 1.52 7.36 -5.01 -0.04 1.48 16 22 C -0.08 -0.95 6.38 -104.27 -0.66 -1.61 16 23 C -0.10 -0.88 10.03 -39.74 -0.40 -1.28 16 24 C -0.10 -0.75 10.05 -39.44 -0.40 -1.15 16 25 C -0.13 -1.17 10.02 -39.64 -0.40 -1.56 16 26 C -0.05 -0.61 10.10 -39.18 -0.40 -1.01 16 27 C -0.14 -2.07 6.26 -105.05 -0.66 -2.73 16 28 C 0.56 10.05 6.67 -12.63 -0.08 9.97 16 29 O -0.49 -10.92 14.97 -16.07 -0.24 -11.16 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.25 6.64 -51.93 -0.34 0.91 16 33 H 0.09 1.63 7.04 -51.93 -0.37 1.26 16 34 H 0.05 0.61 7.40 -51.93 -0.38 0.23 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.39 6.83 8.03 -40.82 -0.33 6.50 16 38 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 39 H 0.01 0.35 8.11 -51.93 -0.42 -0.07 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -35.51 382.14 -9.84 -45.36 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.17 Total: 6.54 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.05 Total: 0.41 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.10 Total: -48.95 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.46 Total: -24.85 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.51 -9.84 -45.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.828 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds