Wall clock time and date at job start Tue Mar 31 2020 15:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47085 * 2 1 4 4 C 1.52996 * 109.47190 * 120.00547 * 2 1 3 5 5 H 1.09000 * 109.46891 * 304.04308 * 4 2 1 6 6 C 1.50697 * 109.47489 * 64.04606 * 4 2 1 7 7 O 1.21279 * 120.00213 * 96.57149 * 6 4 2 8 8 N 1.34781 * 119.99539 * 276.57668 * 6 4 2 9 9 C 1.46502 * 119.99423 * 175.25362 * 8 6 4 10 10 H 1.08997 * 109.47324 * 324.99832 * 9 8 6 11 11 C 1.53002 * 109.47208 * 85.00005 * 9 8 6 12 12 C 1.50702 * 109.46847 * 204.99656 * 9 8 6 13 13 H 1.08003 * 120.00148 * 0.02562 * 12 9 8 14 14 C 1.37885 * 119.99976 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99712 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99953 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47354 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47190 * 120.00407 * 16 14 12 19 19 H 1.48505 * 109.46967 * 240.00175 * 16 14 12 20 20 N 1.46501 * 109.46950 * 184.04896 * 4 2 1 21 21 C 1.46732 * 125.62646 * 119.71444 * 20 4 2 22 22 C 1.50827 * 106.25355 * 179.88299 * 21 20 4 23 23 C 1.37575 * 133.23937 * 180.02562 * 22 21 20 24 24 C 1.38474 * 119.95408 * 180.33755 * 23 22 21 25 25 C 1.38389 * 120.19077 * 0.03925 * 24 23 22 26 26 C 1.37938 * 120.31683 * 359.97438 * 25 24 23 27 27 C 1.39620 * 119.83066 * 359.97438 * 26 25 24 28 28 C 1.34419 * 125.62441 * 300.01887 * 20 4 2 29 29 O 1.21559 * 124.85426 * 359.94496 * 28 20 4 30 30 H 1.08998 * 109.46564 * 294.61711 * 1 2 3 31 31 H 1.09002 * 109.46887 * 54.61433 * 1 2 3 32 32 H 1.08994 * 109.47133 * 174.61728 * 1 2 3 33 33 H 1.08996 * 109.46715 * 240.00470 * 2 1 3 34 34 H 1.09003 * 109.47217 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47454 * 300.00265 * 3 2 1 36 36 H 1.09004 * 109.46747 * 60.00355 * 3 2 1 37 37 H 0.96996 * 120.00527 * 355.25082 * 8 6 4 38 38 H 1.09005 * 109.47230 * 180.02562 * 11 9 8 39 39 H 1.08999 * 109.46789 * 299.99741 * 11 9 8 40 40 H 1.08997 * 109.47119 * 59.99702 * 11 9 8 41 41 H 0.97000 * 120.00011 * 179.97438 * 15 14 12 42 42 H 1.08997 * 110.10129 * 299.22223 * 21 20 4 43 43 H 1.09000 * 110.09605 * 60.82400 * 21 20 4 44 44 H 1.07995 * 120.02361 * 0.33764 * 23 22 21 45 45 H 1.07998 * 119.90770 * 180.02562 * 24 23 22 46 46 H 1.07991 * 119.83891 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.08120 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6188 -0.2511 2.1377 6 6 1.6213 -2.1681 1.2000 7 8 2.3916 -3.0087 0.7865 8 7 0.3907 -2.5279 1.6155 9 6 -0.0542 -3.9163 1.4713 10 1 0.3586 -4.3368 0.5544 11 6 0.4297 -4.7340 2.6705 12 6 -1.5594 -3.9575 1.4097 13 1 -2.1278 -3.0412 1.4713 14 6 -2.2110 -5.1651 1.2737 15 7 -1.5189 -6.2808 1.1982 16 14 -4.0767 -5.2162 1.1966 17 1 -4.6145 -3.8359 1.3017 18 1 -4.5026 -5.8159 -0.0934 19 1 -4.5962 -6.0372 2.3197 20 7 3.5018 -0.6374 1.2989 21 6 4.2862 -0.0135 2.3705 22 6 5.7347 -0.1758 1.9829 23 6 6.9173 0.1978 2.5784 24 6 8.1233 -0.0918 1.9626 25 6 8.1430 -0.7557 0.7485 26 6 6.9630 -1.1344 0.1428 27 6 5.7430 -0.8469 0.7580 28 6 4.3456 -1.1143 0.3674 29 8 4.0059 -1.6854 -0.6505 30 1 -0.3632 0.4281 0.9343 31 1 -0.3633 0.5951 -0.8379 32 1 -0.3633 -1.0231 -0.0964 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 -0.2004 -1.8677 2.0099 38 1 0.0990 -5.7671 2.5631 39 1 1.5183 -4.7041 2.7151 40 1 0.0168 -4.3135 3.5875 41 1 -1.9772 -7.1304 1.1028 42 1 4.0343 1.0438 2.4522 43 1 4.0951 -0.5187 3.3173 44 1 6.9051 0.7165 3.5255 45 1 9.0512 0.2014 2.4310 46 1 9.0867 -0.9783 0.2731 47 1 6.9828 -1.6527 -0.8045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596998095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:41 Heat of formation + Delta-G solvation = -53.784186 kcal Electronic energy + Delta-G solvation = -29125.566756 eV Core-core repulsion = 25272.662727 eV Total energy + Delta-G solvation = -3852.904029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.36621 -40.66208 -38.96708 -37.53637 -36.67358 -36.19949 -34.26680 -32.18988 -31.98195 -31.08211 -28.37965 -27.92938 -27.58093 -27.34405 -24.33658 -23.16608 -22.71948 -21.67180 -21.43640 -20.55386 -19.08360 -18.12957 -17.70349 -17.46390 -17.12369 -16.83593 -16.61235 -16.10759 -15.83164 -15.50697 -15.28991 -15.00578 -14.72294 -14.51570 -14.38384 -14.30226 -14.03830 -13.91482 -13.65687 -13.55686 -13.32422 -13.02992 -12.99027 -12.90050 -12.76339 -12.73130 -12.34340 -12.21019 -12.11655 -12.04194 -12.02471 -11.81509 -11.12925 -10.96477 -10.71353 -10.62009 -10.05064 -9.86329 -9.73422 -9.55604 -8.18464 -6.36657 -0.15793 0.35713 1.43136 1.44112 1.53927 1.56698 1.83616 1.92513 2.36493 2.61148 2.87684 3.12066 3.17616 3.44491 3.74127 3.79591 3.90064 3.94761 4.17659 4.19487 4.28216 4.35569 4.46808 4.51656 4.55829 4.61389 4.70896 4.79331 4.79566 4.87498 4.92805 4.95348 5.01894 5.06716 5.16780 5.19631 5.34799 5.38672 5.40167 5.41258 5.46910 5.59567 5.61766 5.66172 5.90322 5.92919 6.04303 6.07550 6.71998 6.93653 7.20762 7.31777 7.57353 8.88378 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.003153 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.710551 B = 8878.176437 C = 9551.229124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.126 4.126 4 C 0.165 3.835 5 H 0.157 0.843 6 C 0.481 3.519 7 O -0.582 6.582 8 N -0.697 5.697 9 C 0.275 3.725 10 H -0.017 1.017 11 C -0.130 4.130 12 C -0.541 4.541 13 H 0.079 0.921 14 C 0.010 3.990 15 N -0.922 5.922 16 Si 0.975 3.025 17 H -0.254 1.254 18 H -0.288 1.288 19 H -0.278 1.278 20 N -0.603 5.603 21 C 0.138 3.862 22 C -0.082 4.082 23 C -0.096 4.096 24 C -0.081 4.081 25 C -0.127 4.127 26 C -0.075 4.075 27 C -0.192 4.192 28 C 0.543 3.457 29 O -0.561 6.561 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.406 0.594 38 H 0.064 0.936 39 H 0.003 0.997 40 H 0.046 0.954 41 H 0.264 0.736 42 H 0.138 0.862 43 H 0.110 0.890 44 H 0.171 0.829 45 H 0.172 0.828 46 H 0.156 0.844 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.621 22.636 7.669 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 C -0.184 4.184 4 C 0.059 3.941 5 H 0.174 0.826 6 C 0.266 3.734 7 O -0.461 6.461 8 N -0.348 5.348 9 C 0.172 3.828 10 H 0.001 0.999 11 C -0.189 4.189 12 C -0.579 4.579 13 H 0.098 0.902 14 C -0.190 4.190 15 N -0.560 5.560 16 Si 0.799 3.201 17 H -0.177 1.177 18 H -0.214 1.214 19 H -0.203 1.203 20 N -0.335 5.335 21 C 0.017 3.983 22 C -0.083 4.083 23 C -0.114 4.114 24 C -0.099 4.099 25 C -0.145 4.145 26 C -0.094 4.094 27 C -0.196 4.196 28 C 0.333 3.667 29 O -0.440 6.440 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.242 0.758 38 H 0.082 0.918 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.156 0.844 43 H 0.128 0.872 44 H 0.188 0.812 45 H 0.189 0.811 46 H 0.173 0.827 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.822 21.537 6.826 27.020 hybrid contribution -1.139 -1.220 -0.757 1.833 sum 13.682 20.317 6.068 25.235 Atomic orbital electron populations 1.21928 0.92409 1.01993 1.04444 1.21330 0.97512 0.97798 0.95289 1.21684 1.00278 0.92572 1.03824 1.21059 0.78720 0.91234 1.03101 0.82600 1.21632 0.82289 0.92048 0.77453 1.90727 1.53377 1.54319 1.47676 1.46232 1.14890 1.12404 1.61277 1.18257 0.93799 0.77936 0.92827 0.99877 1.21863 0.95680 1.02748 0.98599 1.21573 0.90612 0.94112 1.51568 0.90249 1.25884 1.03936 0.94966 0.94178 1.70092 1.37452 0.98647 1.49833 0.85250 0.78536 0.78937 0.77329 1.17740 1.21380 1.20335 1.47677 1.04642 1.58262 1.22946 1.20861 0.85706 1.01314 0.90391 1.20733 0.96243 0.97254 0.94066 1.20765 0.89169 1.00133 1.01339 1.21828 0.99292 0.94862 0.93875 1.21438 0.97397 0.98953 0.96725 1.21025 0.91314 0.97511 0.99541 1.20535 0.93219 1.05975 0.99834 1.18865 0.87152 0.77530 0.83106 1.90743 1.82551 1.42279 1.28444 0.88817 0.90782 0.94494 0.94529 0.93872 0.91717 0.89001 0.75765 0.91762 0.97753 0.93502 0.92671 0.84435 0.87227 0.81157 0.81052 0.82656 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.38 71.98 0.60 -3.19 16 2 C -0.10 -2.84 2.31 -10.79 -0.02 -2.86 16 3 C -0.13 -2.49 8.99 71.98 0.65 -1.84 16 4 C 0.16 4.91 2.31 44.24 0.10 5.01 16 5 H 0.16 2.98 8.10 -2.39 -0.02 2.96 16 6 C 0.48 20.87 6.45 87.66 0.57 21.44 16 7 O -0.58 -32.78 13.80 17.42 0.24 -32.54 16 8 N -0.70 -29.77 3.87 -446.09 -1.72 -31.49 16 9 C 0.28 14.96 2.52 44.25 0.11 15.08 16 10 H -0.02 -1.11 7.65 -2.39 -0.02 -1.13 16 11 C -0.13 -6.92 9.26 71.98 0.67 -6.26 16 12 C -0.54 -29.06 8.73 25.60 0.22 -28.84 16 13 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 14 C 0.01 0.54 5.30 84.66 0.45 0.99 16 15 N -0.92 -54.89 11.32 21.45 0.24 -54.65 16 16 Si 0.98 42.65 29.54 68.60 2.03 44.68 16 17 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 18 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 20 N -0.60 -17.96 1.87 -809.81 -1.51 -19.47 16 21 C 0.14 2.48 7.36 85.63 0.63 3.11 16 22 C -0.08 -1.64 6.38 -19.63 -0.13 -1.77 16 23 C -0.10 -1.19 10.03 22.17 0.22 -0.97 16 24 C -0.08 -0.92 10.05 22.36 0.22 -0.70 16 25 C -0.13 -2.10 10.02 22.23 0.22 -1.88 16 26 C -0.07 -1.95 10.10 22.53 0.23 -1.72 16 27 C -0.19 -5.75 6.26 -20.14 -0.13 -5.88 16 28 C 0.54 20.99 6.67 86.75 0.58 21.57 16 29 O -0.56 -28.27 14.97 16.55 0.25 -28.03 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.22 6.64 -2.39 -0.02 1.21 16 33 H 0.04 1.44 7.04 -2.39 -0.02 1.43 16 34 H 0.04 0.94 7.40 -2.39 -0.02 0.92 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.41 13.89 8.03 -92.71 -0.74 13.15 16 38 H 0.06 3.74 6.07 -2.38 -0.01 3.73 16 39 H 0.00 0.18 8.11 -2.39 -0.02 0.16 16 40 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 45 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 46 H 0.16 1.67 8.06 -2.92 -0.02 1.64 16 47 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -90.68 382.14 4.95 -85.73 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.23 Total: 24.49 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 5.20 Total: 11.28 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -2.99 Total: -105.61 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: 0.49 Total: -60.57 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -90.68 4.95 -85.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.945 kcal (2) G-P(sol) polarization free energy of solvation -90.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds