Wall clock time and date at job start Tue Mar 31 2020 16:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47375 * 2 1 4 4 N 1.46505 * 109.46762 * 240.00299 * 2 1 3 5 5 C 1.34770 * 120.00417 * 85.00089 * 4 2 1 6 6 O 1.21555 * 119.99741 * 359.97438 * 5 4 2 7 7 C 1.47847 * 120.00255 * 180.02562 * 5 4 2 8 8 C 1.39576 * 120.14205 * 359.72201 * 7 5 4 9 9 C 1.37957 * 119.85032 * 179.78868 * 8 7 5 10 10 C 1.38353 * 120.14600 * 0.49164 * 9 8 7 11 11 C 1.38363 * 120.29296 * 359.73674 * 10 9 8 12 12 C 1.37954 * 120.14342 * 0.02631 * 11 10 9 13 13 C 1.50698 * 109.47425 * 120.00165 * 2 1 3 14 14 O 1.21285 * 120.00030 * 104.02593 * 13 2 1 15 15 N 1.34776 * 119.99792 * 284.03165 * 13 2 1 16 16 C 1.46933 * 120.60739 * 354.68397 * 15 13 2 17 17 C 1.53192 * 108.77199 * 233.53996 * 16 15 13 18 18 C 1.53038 * 109.34021 * 305.41336 * 17 16 15 19 19 C 1.53035 * 109.53821 * 61.34888 * 18 17 16 20 20 H 1.08997 * 109.49861 * 58.61969 * 19 18 17 21 21 C 1.50702 * 109.49641 * 178.68511 * 19 18 17 22 22 H 1.08002 * 119.99866 * 120.00397 * 21 19 18 23 23 C 1.37875 * 119.99997 * 299.99565 * 21 19 18 24 24 N 1.31515 * 119.99875 * 0.02562 * 23 21 19 25 25 Si 1.86802 * 119.99963 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47065 * 60.00630 * 25 23 21 27 27 H 1.48504 * 109.47176 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47146 * 300.00385 * 25 23 21 29 29 C 1.46927 * 120.62882 * 174.66885 * 15 13 2 30 30 H 1.09000 * 109.47795 * 184.98432 * 1 2 3 31 31 H 1.09009 * 109.46674 * 304.98068 * 1 2 3 32 32 H 1.09004 * 109.47439 * 64.97803 * 1 2 3 33 33 H 0.97005 * 119.99534 * 265.00197 * 4 2 1 34 34 H 1.08000 * 120.07457 * 0.02562 * 8 7 5 35 35 H 1.08000 * 119.92637 * 180.22598 * 9 8 7 36 36 H 1.08000 * 119.85720 * 179.76672 * 10 9 8 37 37 H 1.08000 * 119.92569 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.07344 * 179.97438 * 12 11 10 39 39 H 1.08992 * 109.56161 * 113.76709 * 16 15 13 40 40 H 1.09000 * 109.61043 * 353.34052 * 16 15 13 41 41 H 1.09006 * 109.49594 * 185.44686 * 17 16 15 42 42 H 1.08999 * 109.50185 * 65.38320 * 17 16 15 43 43 H 1.09000 * 109.46320 * 181.37211 * 18 17 16 44 44 H 1.09008 * 109.45906 * 301.32771 * 18 17 16 45 45 H 0.97008 * 119.99544 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.58661 * 6.64301 * 29 15 13 47 47 H 1.09001 * 109.70334 * 246.28890 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1469 -0.0183 -2.3572 6 8 1.8575 1.1610 -2.4118 7 6 2.6391 -0.7154 -3.5645 8 6 2.9769 -2.0683 -3.5040 9 6 3.4314 -2.7139 -4.6353 10 6 3.5624 -2.0207 -5.8255 11 6 3.2338 -0.6783 -5.8912 12 6 2.7735 -0.0220 -4.7684 13 6 2.0324 -0.7104 1.2304 14 8 2.4745 -1.8364 1.1425 15 7 1.9902 -0.0946 2.4285 16 6 1.5665 1.3084 2.5340 17 6 2.6460 2.0942 3.2850 18 6 2.9224 1.4176 4.6296 19 6 3.4375 -0.0036 4.3910 20 1 4.3449 0.0346 3.7883 21 6 3.7399 -0.6577 5.7146 22 1 3.2231 -1.5618 6.0007 23 6 4.6765 -0.1020 6.5601 24 7 5.3056 0.9992 6.2118 25 14 5.0509 -0.9124 8.2011 26 1 5.5503 -2.2915 7.9695 27 1 6.0859 -0.1245 8.9176 28 1 3.8138 -0.9650 9.0208 29 6 2.3666 -0.8135 3.6533 30 1 -0.3635 -1.0237 0.0893 31 1 -0.3633 0.5892 0.8421 32 1 -0.3634 0.4347 -0.9312 33 1 2.2488 -1.6318 -1.1527 34 1 2.8790 -2.6095 -2.5745 35 1 3.6896 -3.7616 -4.5907 36 1 3.9222 -2.5298 -6.7074 37 1 3.3380 -0.1431 -6.8234 38 1 2.5178 1.0259 -4.8208 39 1 0.6257 1.3653 3.0814 40 1 1.4370 1.7274 1.5362 41 1 2.3014 3.1143 3.4550 42 1 3.5607 2.1132 2.6925 43 1 3.6728 1.9889 5.1761 44 1 2.0018 1.3773 5.2119 45 1 5.9643 1.3904 6.8069 46 1 2.7647 -1.7944 3.3936 47 1 1.4924 -0.9318 4.2934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597918504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:37 Heat of formation + Delta-G solvation = -51.114828 kcal Electronic energy + Delta-G solvation = -28105.225538 eV Core-core repulsion = 24252.437261 eV Total energy + Delta-G solvation = -3852.788277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67678 -39.71783 -38.38282 -36.94784 -35.05265 -33.63358 -32.19430 -31.39951 -31.22372 -30.51086 -29.67607 -25.59920 -25.12439 -24.48022 -23.12323 -22.60209 -21.76177 -20.60763 -19.93725 -18.92666 -18.06106 -16.96179 -16.46563 -16.37333 -15.93766 -15.49166 -15.32874 -14.85826 -14.72569 -14.58198 -14.39975 -13.91545 -13.65812 -13.61917 -13.31955 -13.18078 -12.89789 -12.76537 -12.52255 -12.29309 -12.12436 -11.99152 -11.96377 -11.65630 -11.38500 -10.99490 -10.88453 -10.79550 -10.37648 -10.11809 -9.99395 -9.88802 -9.59879 -9.45148 -9.32659 -9.29220 -9.12402 -8.87187 -8.42613 -8.01500 -6.04857 -4.12499 0.58209 1.06407 2.63799 2.76360 2.90640 3.29209 3.33997 3.36103 3.49205 3.63234 4.39546 4.42920 4.51541 4.58807 4.63509 4.82906 4.98526 5.03171 5.07208 5.18051 5.23984 5.31504 5.48888 5.50029 5.57246 5.64615 5.67521 5.75344 5.97437 6.01699 6.04822 6.09212 6.12894 6.22466 6.28573 6.33920 6.42384 6.56828 6.59094 6.73310 6.86317 7.11282 7.27793 7.37379 7.65121 7.80187 7.91119 8.03464 8.05338 8.30709 8.43310 8.90677 9.52585 11.00586 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.002503 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.028257 B =11181.844649 C =11734.667731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.113 0.887 4 N -0.707 5.707 5 C 0.561 3.439 6 O -0.539 6.539 7 C -0.133 4.133 8 C -0.084 4.084 9 C -0.127 4.127 10 C -0.096 4.096 11 C -0.130 4.130 12 C -0.060 4.060 13 C 0.508 3.492 14 O -0.549 6.549 15 N -0.594 5.594 16 C 0.103 3.897 17 C -0.136 4.136 18 C -0.113 4.113 19 C 0.040 3.960 20 H 0.030 0.970 21 C -0.516 4.516 22 H 0.057 0.943 23 C 0.064 3.936 24 N -0.888 5.888 25 Si 0.894 3.106 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.117 3.883 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.410 0.590 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.036 0.964 45 H 0.261 0.739 46 H 0.080 0.920 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 -2.007 -20.473 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.014 3.986 3 H 0.130 0.870 4 N -0.360 5.360 5 C 0.349 3.651 6 O -0.417 6.417 7 C -0.136 4.136 8 C -0.102 4.102 9 C -0.145 4.145 10 C -0.114 4.114 11 C -0.148 4.148 12 C -0.079 4.079 13 C 0.294 3.706 14 O -0.428 6.428 15 N -0.325 5.325 16 C -0.019 4.019 17 C -0.174 4.174 18 C -0.151 4.151 19 C 0.021 3.979 20 H 0.048 0.952 21 C -0.554 4.554 22 H 0.075 0.925 23 C -0.138 4.138 24 N -0.527 5.527 25 Si 0.722 3.278 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.202 1.202 29 C -0.004 4.004 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.248 0.752 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.648 -1.633 -20.426 21.872 hybrid contribution 0.418 -0.764 1.041 1.357 sum -7.230 -2.396 -19.385 20.828 Atomic orbital electron populations 1.22088 0.92637 1.03156 1.03547 1.20855 0.95840 0.98139 0.83720 0.86979 1.45716 1.66867 1.14978 1.08481 1.18264 0.77480 0.86416 0.82969 1.90765 1.50476 1.15390 1.85075 1.19929 1.04797 0.94547 0.94297 1.21435 0.96320 0.93435 0.99058 1.21142 1.00285 1.00448 0.92671 1.21397 0.97507 0.94538 0.97975 1.21169 1.00208 0.94899 0.98564 1.21298 0.95070 1.00471 0.91035 1.20347 0.78949 0.86676 0.84649 1.90646 1.47216 1.19465 1.85505 1.48245 1.64451 1.12635 1.07166 1.21905 0.98392 0.80973 1.00673 1.22012 0.97708 0.98101 0.99564 1.21643 1.00812 0.99262 0.93381 1.18968 0.92569 0.91476 0.94863 0.95235 1.21018 1.22274 1.10116 1.02014 0.92518 1.24938 0.95653 0.94935 0.98269 1.69864 1.26163 1.19644 1.37023 0.86631 0.78029 0.79489 0.83699 1.20227 1.21296 1.20241 1.22059 0.99049 0.96735 0.82564 0.91762 0.90618 0.90944 0.75209 0.85264 0.85263 0.85581 0.85304 0.84577 0.91431 0.90837 0.92184 0.92310 0.88532 0.94479 0.92866 0.90201 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.29 37.16 0.35 -1.45 16 2 C 0.12 1.71 2.13 -69.08 -0.15 1.57 16 3 H 0.11 1.61 5.97 -51.93 -0.31 1.30 16 4 N -0.71 -9.42 4.98 -55.88 -0.28 -9.70 16 5 C 0.56 7.68 7.74 -12.33 -0.10 7.59 16 6 O -0.54 -8.71 16.01 5.32 0.09 -8.63 16 7 C -0.13 -1.52 5.87 -104.97 -0.62 -2.14 16 8 C -0.08 -0.81 9.54 -39.19 -0.37 -1.18 16 9 C -0.13 -1.02 10.03 -39.64 -0.40 -1.42 16 10 C -0.10 -0.70 10.04 -39.49 -0.40 -1.10 16 11 C -0.13 -1.04 10.03 -39.64 -0.40 -1.44 16 12 C -0.06 -0.61 9.60 -39.19 -0.38 -0.99 16 13 C 0.51 8.73 6.97 -10.99 -0.08 8.65 16 14 O -0.55 -10.91 15.29 5.55 0.08 -10.82 16 15 N -0.59 -10.53 2.97 -172.76 -0.51 -11.04 16 16 C 0.10 1.56 5.50 -3.71 -0.02 1.54 16 17 C -0.14 -2.38 6.08 -26.61 -0.16 -2.54 16 18 C -0.11 -2.48 4.96 -26.69 -0.13 -2.62 16 19 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 20 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.52 -13.73 8.56 -34.44 -0.29 -14.02 16 22 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 23 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 24 N -0.89 -24.76 11.31 55.43 0.63 -24.13 16 25 Si 0.89 20.90 29.54 -169.99 -5.02 15.87 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 C 0.12 2.43 5.67 -3.71 -0.02 2.41 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.79 7.07 -51.92 -0.37 0.42 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.41 5.16 5.75 -40.82 -0.23 4.92 16 34 H 0.13 1.12 6.41 -52.49 -0.34 0.79 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 1.38 7.65 -52.49 -0.40 0.97 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.93 5.23 -51.93 -0.27 0.66 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 44 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.08 1.78 7.00 -51.93 -0.36 1.42 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -31.23 377.47 -9.58 -40.81 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.79 Total: 6.69 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -3.46 Total: -4.74 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.16 Total: -44.87 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.17 Total: -19.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.23 -9.58 -40.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597918504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.302 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds