Wall clock time and date at job start Tue Mar 31 2020 16:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47375 * 2 1 4 4 N 1.46505 * 109.46762 * 240.00299 * 2 1 3 5 5 C 1.34770 * 120.00417 * 85.00089 * 4 2 1 6 6 O 1.21555 * 119.99741 * 359.97438 * 5 4 2 7 7 C 1.47847 * 120.00255 * 180.02562 * 5 4 2 8 8 C 1.39576 * 120.14205 * 359.72201 * 7 5 4 9 9 C 1.37957 * 119.85032 * 179.78868 * 8 7 5 10 10 C 1.38353 * 120.14600 * 0.49164 * 9 8 7 11 11 C 1.38363 * 120.29296 * 359.73674 * 10 9 8 12 12 C 1.37954 * 120.14342 * 0.02631 * 11 10 9 13 13 C 1.50698 * 109.47425 * 120.00165 * 2 1 3 14 14 O 1.21285 * 120.00030 * 104.02593 * 13 2 1 15 15 N 1.34776 * 119.99792 * 284.03165 * 13 2 1 16 16 C 1.46933 * 120.60739 * 354.68397 * 15 13 2 17 17 C 1.53192 * 108.77199 * 233.53996 * 16 15 13 18 18 C 1.53038 * 109.34021 * 305.41336 * 17 16 15 19 19 C 1.53035 * 109.53821 * 61.34888 * 18 17 16 20 20 H 1.08997 * 109.49861 * 58.61969 * 19 18 17 21 21 C 1.50702 * 109.49641 * 178.68511 * 19 18 17 22 22 H 1.08002 * 119.99866 * 120.00397 * 21 19 18 23 23 C 1.37875 * 119.99997 * 299.99565 * 21 19 18 24 24 N 1.31515 * 119.99875 * 0.02562 * 23 21 19 25 25 Si 1.86802 * 119.99963 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47065 * 60.00630 * 25 23 21 27 27 H 1.48504 * 109.47176 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47146 * 300.00385 * 25 23 21 29 29 C 1.46927 * 120.62882 * 174.66885 * 15 13 2 30 30 H 1.09000 * 109.47795 * 184.98432 * 1 2 3 31 31 H 1.09009 * 109.46674 * 304.98068 * 1 2 3 32 32 H 1.09004 * 109.47439 * 64.97803 * 1 2 3 33 33 H 0.97005 * 119.99534 * 265.00197 * 4 2 1 34 34 H 1.08000 * 120.07457 * 0.02562 * 8 7 5 35 35 H 1.08000 * 119.92637 * 180.22598 * 9 8 7 36 36 H 1.08000 * 119.85720 * 179.76672 * 10 9 8 37 37 H 1.08000 * 119.92569 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.07344 * 179.97438 * 12 11 10 39 39 H 1.08992 * 109.56161 * 113.76709 * 16 15 13 40 40 H 1.09000 * 109.61043 * 353.34052 * 16 15 13 41 41 H 1.09006 * 109.49594 * 185.44686 * 17 16 15 42 42 H 1.08999 * 109.50185 * 65.38320 * 17 16 15 43 43 H 1.09000 * 109.46320 * 181.37211 * 18 17 16 44 44 H 1.09008 * 109.45906 * 301.32771 * 18 17 16 45 45 H 0.97008 * 119.99544 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.58661 * 6.64301 * 29 15 13 47 47 H 1.09001 * 109.70334 * 246.28890 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1469 -0.0183 -2.3572 6 8 1.8575 1.1610 -2.4118 7 6 2.6391 -0.7154 -3.5645 8 6 2.9769 -2.0683 -3.5040 9 6 3.4314 -2.7139 -4.6353 10 6 3.5624 -2.0207 -5.8255 11 6 3.2338 -0.6783 -5.8912 12 6 2.7735 -0.0220 -4.7684 13 6 2.0324 -0.7104 1.2304 14 8 2.4745 -1.8364 1.1425 15 7 1.9902 -0.0946 2.4285 16 6 1.5665 1.3084 2.5340 17 6 2.6460 2.0942 3.2850 18 6 2.9224 1.4176 4.6296 19 6 3.4375 -0.0036 4.3910 20 1 4.3449 0.0346 3.7883 21 6 3.7399 -0.6577 5.7146 22 1 3.2231 -1.5618 6.0007 23 6 4.6765 -0.1020 6.5601 24 7 5.3056 0.9992 6.2118 25 14 5.0509 -0.9124 8.2011 26 1 5.5503 -2.2915 7.9695 27 1 6.0859 -0.1245 8.9176 28 1 3.8138 -0.9650 9.0208 29 6 2.3666 -0.8135 3.6533 30 1 -0.3635 -1.0237 0.0893 31 1 -0.3633 0.5892 0.8421 32 1 -0.3634 0.4347 -0.9312 33 1 2.2488 -1.6318 -1.1527 34 1 2.8790 -2.6095 -2.5745 35 1 3.6896 -3.7616 -4.5907 36 1 3.9222 -2.5298 -6.7074 37 1 3.3380 -0.1431 -6.8234 38 1 2.5178 1.0259 -4.8208 39 1 0.6257 1.3653 3.0814 40 1 1.4370 1.7274 1.5362 41 1 2.3014 3.1143 3.4550 42 1 3.5607 2.1132 2.6925 43 1 3.6728 1.9889 5.1761 44 1 2.0018 1.3773 5.2119 45 1 5.9643 1.3904 6.8069 46 1 2.7647 -1.7944 3.3936 47 1 1.4924 -0.9318 4.2934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597918504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:36 Heat of formation + Delta-G solvation = -69.623401 kcal Electronic energy + Delta-G solvation = -28106.028130 eV Core-core repulsion = 24252.437261 eV Total energy + Delta-G solvation = -3853.590869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83549 -40.86851 -39.27592 -38.48144 -36.23129 -35.41901 -33.41964 -32.79278 -31.99654 -31.87851 -30.81741 -27.20217 -26.71630 -25.55617 -24.15940 -23.46047 -23.29895 -21.72158 -21.30825 -20.22991 -19.27825 -18.42260 -18.00977 -17.49521 -17.04334 -16.71690 -16.47546 -16.38681 -15.89496 -15.63921 -15.48735 -15.18019 -14.90257 -14.70952 -14.69319 -14.35848 -14.28002 -14.04739 -13.64654 -13.64540 -13.41020 -13.31183 -12.85897 -12.76799 -12.67323 -12.61843 -12.59700 -12.03213 -11.98121 -11.85757 -11.63244 -11.31112 -11.17088 -10.94266 -10.74417 -10.43978 -10.38768 -9.96559 -9.92549 -9.57445 -8.11064 -6.26547 -0.17252 0.40455 1.38784 1.42123 1.42937 1.50411 1.68569 1.79627 2.22469 2.43487 2.88297 3.15703 3.26092 3.58899 3.85660 3.91891 3.97819 4.01291 4.08840 4.20992 4.24139 4.31783 4.46039 4.51154 4.52648 4.56035 4.60660 4.70961 4.78134 4.83013 4.85013 4.94536 5.05154 5.08982 5.10748 5.15893 5.24149 5.33961 5.43375 5.45059 5.49885 5.51297 5.60421 5.91846 5.93976 6.12431 6.32561 6.33982 6.40785 6.82674 6.98490 7.02655 7.41866 8.92467 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.002503 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.028257 B =11181.844649 C =11734.667731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 H 0.112 0.888 4 N -0.706 5.706 5 C 0.560 3.440 6 O -0.570 6.570 7 C -0.158 4.158 8 C -0.093 4.093 9 C -0.130 4.130 10 C -0.088 4.088 11 C -0.129 4.129 12 C -0.075 4.075 13 C 0.506 3.494 14 O -0.581 6.581 15 N -0.597 5.597 16 C 0.105 3.895 17 C -0.129 4.129 18 C -0.106 4.106 19 C 0.040 3.960 20 H -0.017 1.017 21 C -0.536 4.536 22 H 0.056 0.944 23 C 0.015 3.985 24 N -0.915 5.915 25 Si 0.955 3.045 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.267 1.267 29 C 0.131 3.869 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.412 0.588 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.261 0.739 46 H 0.057 0.943 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 -2.408 -21.981 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 H 0.129 0.871 4 N -0.360 5.360 5 C 0.350 3.650 6 O -0.450 6.450 7 C -0.161 4.161 8 C -0.111 4.111 9 C -0.148 4.148 10 C -0.106 4.106 11 C -0.147 4.147 12 C -0.094 4.094 13 C 0.294 3.706 14 O -0.461 6.461 15 N -0.328 5.328 16 C -0.017 4.017 17 C -0.167 4.167 18 C -0.144 4.144 19 C 0.021 3.979 20 H 0.001 0.999 21 C -0.575 4.575 22 H 0.074 0.926 23 C -0.184 4.184 24 N -0.554 5.554 25 Si 0.781 3.219 26 H -0.201 1.201 27 H -0.210 1.210 28 H -0.191 1.191 29 C 0.009 3.991 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.251 0.749 34 H 0.149 0.851 35 H 0.171 0.829 36 H 0.177 0.823 37 H 0.173 0.827 38 H 0.147 0.853 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.924 -2.032 -21.943 23.775 hybrid contribution 0.886 -0.686 1.436 1.821 sum -8.038 -2.718 -20.507 22.193 Atomic orbital electron populations 1.22071 0.90292 1.03750 1.04548 1.20839 0.97468 0.97314 0.82226 0.87076 1.45753 1.66842 1.15089 1.08327 1.18651 0.76751 0.86119 0.83490 1.90731 1.52075 1.16636 1.85603 1.19890 1.06939 0.95457 0.93807 1.21559 0.96644 0.92858 1.00072 1.21489 0.99377 1.01643 0.92273 1.21826 0.95789 0.94243 0.98768 1.21494 0.99065 0.95445 0.98688 1.21405 0.95940 1.00427 0.91580 1.20920 0.78062 0.86399 0.85233 1.90628 1.48451 1.21059 1.86010 1.48259 1.64480 1.13688 1.06378 1.22117 0.98216 0.78856 1.02500 1.21923 0.98085 0.99819 0.96901 1.21435 0.99712 0.97589 0.95696 1.18881 0.91900 0.93536 0.93598 0.99870 1.21407 1.22569 1.10284 1.03223 0.92619 1.25710 0.95579 0.95462 1.01607 1.70014 1.26533 1.20751 1.38081 0.85655 0.78109 0.78383 0.79774 1.20088 1.21018 1.19138 1.21627 0.98291 0.95399 0.83833 0.91557 0.88827 0.90507 0.74893 0.85057 0.82918 0.82345 0.82721 0.85306 0.88665 0.87761 0.89092 0.94261 0.92011 0.93874 0.92982 0.92412 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.29 71.98 0.67 -2.45 16 2 C 0.13 3.51 2.13 44.24 0.09 3.60 16 3 H 0.11 3.06 5.97 -2.39 -0.01 3.05 16 4 N -0.71 -18.82 4.98 -448.98 -2.24 -21.05 16 5 C 0.56 15.47 7.74 86.79 0.67 16.14 16 6 O -0.57 -18.57 16.01 -3.89 -0.06 -18.63 16 7 C -0.16 -3.60 5.87 -20.09 -0.12 -3.72 16 8 C -0.09 -1.72 9.54 22.53 0.21 -1.51 16 9 C -0.13 -1.79 10.03 22.23 0.22 -1.56 16 10 C -0.09 -1.02 10.04 22.33 0.22 -0.80 16 11 C -0.13 -1.77 10.03 22.23 0.22 -1.55 16 12 C -0.07 -1.49 9.60 22.52 0.22 -1.27 16 13 C 0.51 17.28 6.97 87.66 0.61 17.89 16 14 O -0.58 -23.45 15.29 -3.05 -0.05 -23.50 16 15 N -0.60 -20.85 2.97 -818.88 -2.43 -23.28 16 16 C 0.10 2.92 5.50 86.36 0.48 3.39 16 17 C -0.13 -4.42 6.08 30.67 0.19 -4.24 16 18 C -0.11 -4.73 4.96 30.62 0.15 -4.57 16 19 C 0.04 2.00 2.25 -11.46 -0.03 1.97 16 20 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 21 C -0.54 -29.32 8.56 25.60 0.22 -29.10 16 22 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 23 C 0.02 0.85 5.30 84.65 0.45 1.30 16 24 N -0.91 -52.54 11.31 21.45 0.24 -52.29 16 25 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 C 0.13 5.52 5.67 86.36 0.49 6.01 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.64 7.07 -2.38 -0.02 1.62 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.41 10.52 5.75 -92.70 -0.53 9.98 16 34 H 0.13 2.27 6.41 -2.91 -0.02 2.25 16 35 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 37 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.13 2.65 7.65 -2.91 -0.02 2.63 16 39 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.10 2.33 5.23 -2.39 -0.01 2.32 16 41 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 3.20 6.04 -2.39 -0.01 3.18 16 44 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 46 H 0.06 2.67 7.00 -2.39 -0.02 2.65 16 47 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -71.04 377.47 2.92 -68.12 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.45 Total: 25.73 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 4.97 Total: -0.47 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -4.43 Total: -96.63 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.11 Total: -42.13 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.04 2.92 -68.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597918504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.501 kcal (2) G-P(sol) polarization free energy of solvation -71.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds