Wall clock time and date at job start Tue Mar 31 2020 16:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47219 * 2 1 4 4 N 1.46505 * 109.46905 * 239.99793 * 2 1 3 5 5 C 1.34777 * 119.99826 * 85.00163 * 4 2 1 6 6 O 1.21548 * 119.99907 * 359.97438 * 5 4 2 7 7 C 1.47847 * 119.99800 * 179.97438 * 5 4 2 8 8 C 1.39575 * 120.14360 * 359.72200 * 7 5 4 9 9 C 1.37962 * 119.85059 * 179.78825 * 8 7 5 10 10 C 1.38359 * 120.14367 * 0.48946 * 9 8 7 11 11 C 1.38355 * 120.29244 * 359.74284 * 10 9 8 12 12 C 1.37959 * 120.14975 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47025 * 119.99762 * 2 1 3 14 14 O 1.21278 * 119.99922 * 99.20603 * 13 2 1 15 15 N 1.34771 * 120.00145 * 279.20167 * 13 2 1 16 16 C 1.46927 * 120.62794 * 354.99951 * 15 13 2 17 17 C 1.53190 * 108.77459 * 126.43317 * 16 15 13 18 18 C 1.53035 * 109.31745 * 54.63156 * 17 16 15 19 19 C 1.53046 * 109.53760 * 298.63818 * 18 17 16 20 20 H 1.08999 * 109.49361 * 301.37372 * 19 18 17 21 21 C 1.50698 * 109.49704 * 181.31468 * 19 18 17 22 22 H 1.08004 * 120.00064 * 240.06030 * 21 19 18 23 23 C 1.37879 * 120.00198 * 59.78847 * 21 19 18 24 24 N 1.31514 * 119.99842 * 0.27217 * 23 21 19 25 25 Si 1.86801 * 120.00105 * 180.27605 * 23 21 19 26 26 H 1.48501 * 109.46860 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47529 * 119.99786 * 25 23 21 28 28 H 1.48507 * 109.47012 * 240.00057 * 25 23 21 29 29 C 1.46931 * 120.60461 * 175.01637 * 15 13 2 30 30 H 1.09005 * 109.47207 * 295.34627 * 1 2 3 31 31 H 1.08997 * 109.47575 * 55.34999 * 1 2 3 32 32 H 1.09007 * 109.47338 * 175.35228 * 1 2 3 33 33 H 0.96994 * 119.99593 * 264.99771 * 4 2 1 34 34 H 1.08000 * 120.07451 * 0.02562 * 8 7 5 35 35 H 1.07998 * 119.92619 * 180.23330 * 9 8 7 36 36 H 1.07997 * 119.84815 * 179.76165 * 10 9 8 37 37 H 1.07996 * 119.92581 * 180.02562 * 11 10 9 38 38 H 1.07996 * 120.08010 * 179.97438 * 12 11 10 39 39 H 1.08994 * 109.59184 * 6.63953 * 16 15 13 40 40 H 1.09001 * 109.58514 * 246.21418 * 16 15 13 41 41 H 1.09001 * 109.50116 * 294.67969 * 17 16 15 42 42 H 1.09005 * 109.52738 * 174.59935 * 17 16 15 43 43 H 1.09006 * 109.46602 * 178.61357 * 18 17 16 44 44 H 1.09000 * 109.46180 * 58.65584 * 18 17 16 45 45 H 0.97005 * 119.99831 * 179.97438 * 24 23 21 46 46 H 1.08998 * 109.55817 * 113.77044 * 29 15 13 47 47 H 1.09002 * 109.61529 * 353.34066 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8575 1.1609 -2.4118 7 6 2.6403 -0.7152 -3.5642 8 6 2.9791 -2.0679 -3.5033 9 6 3.4346 -2.7132 -4.6344 10 6 3.5656 -2.0201 -5.8246 11 6 3.2361 -0.6780 -5.8905 12 6 2.7748 -0.0218 -4.7681 13 6 2.0323 -0.7104 1.2305 14 8 2.3928 -1.8661 1.1588 15 7 2.0810 -0.0613 2.4107 16 6 1.7520 1.3683 2.4928 17 6 0.6730 1.5653 3.5622 18 6 1.1499 0.9533 4.8813 19 6 1.3777 -0.5488 4.6959 20 1 0.4506 -1.0196 4.3688 21 6 1.8162 -1.1562 6.0034 22 1 2.7731 -1.6519 6.0746 23 6 0.9983 -1.0742 7.1104 24 7 -0.1669 -0.4706 7.0237 25 14 1.5453 -1.8205 8.7332 26 1 2.8857 -2.4378 8.5672 27 1 1.6138 -0.7581 9.7685 28 1 0.5710 -2.8594 9.1536 29 6 2.4644 -0.7704 3.6391 30 1 -0.3634 0.4399 0.9288 31 1 -0.3634 0.5843 -0.8454 32 1 -0.3634 -1.0243 -0.0833 33 1 2.2490 -1.6318 -1.1525 34 1 2.8812 -2.6090 -2.5738 35 1 3.6935 -3.7608 -4.5896 36 1 3.9263 -2.5291 -6.7062 37 1 3.3402 -0.1428 -6.8228 38 1 2.5183 1.0259 -4.8207 39 1 1.3784 1.7133 1.5288 40 1 2.6436 1.9333 2.7649 41 1 -0.2473 1.0747 3.2453 42 1 0.4881 2.6305 3.7013 43 1 0.3943 1.1138 5.6504 44 1 2.0833 1.4272 5.1851 45 1 -0.7425 -0.4133 7.8025 46 1 3.4143 -0.3801 4.0043 47 1 2.5603 -1.8362 3.4316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597918506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:44 Heat of formation + Delta-G solvation = -51.558777 kcal Electronic energy + Delta-G solvation = -28082.804484 eV Core-core repulsion = 24229.996956 eV Total energy + Delta-G solvation = -3852.807528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.69002 -39.73375 -38.40241 -36.95949 -35.05800 -33.63130 -32.19017 -31.40524 -31.25094 -30.53838 -29.67566 -25.58646 -25.11401 -24.49862 -23.13650 -22.62396 -21.75627 -20.61729 -20.02335 -18.86289 -18.03615 -17.00635 -16.52154 -16.36368 -15.94513 -15.51654 -15.31075 -14.82355 -14.65767 -14.60856 -14.47022 -13.94270 -13.78524 -13.59671 -13.39070 -13.09476 -12.83725 -12.72716 -12.63814 -12.21497 -12.07447 -11.99482 -11.96748 -11.62904 -11.41080 -11.03914 -10.89711 -10.76008 -10.37546 -10.13432 -10.00816 -9.91166 -9.60397 -9.46896 -9.34479 -9.31527 -9.13702 -8.86995 -8.44207 -8.02341 -6.06741 -4.13918 0.55552 1.03594 2.62871 2.74331 2.88659 3.25750 3.34232 3.38011 3.50299 3.61220 4.38462 4.41436 4.49478 4.58555 4.60994 4.80684 5.00906 5.05115 5.08689 5.15718 5.22517 5.31280 5.46923 5.55558 5.59866 5.64256 5.67565 5.78784 5.98917 5.99877 6.06746 6.10242 6.11408 6.23536 6.27804 6.32171 6.41421 6.54130 6.58920 6.73041 6.84755 7.09966 7.26490 7.35789 7.64021 7.79584 7.89255 8.01900 8.03412 8.29529 8.42796 8.89665 9.51346 10.98753 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.026660 B = 0.002376 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.013965 B =11780.524103 C =12471.298562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.111 0.889 4 N -0.707 5.707 5 C 0.561 3.439 6 O -0.539 6.539 7 C -0.133 4.133 8 C -0.084 4.084 9 C -0.127 4.127 10 C -0.096 4.096 11 C -0.130 4.130 12 C -0.060 4.060 13 C 0.508 3.492 14 O -0.550 6.550 15 N -0.594 5.594 16 C 0.102 3.898 17 C -0.134 4.134 18 C -0.114 4.114 19 C 0.040 3.960 20 H 0.030 0.970 21 C -0.514 4.514 22 H 0.058 0.942 23 C 0.063 3.937 24 N -0.888 5.888 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 C 0.117 3.883 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.409 0.591 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.036 0.964 45 H 0.260 0.740 46 H 0.057 0.943 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 1.227 -22.260 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.128 0.872 4 N -0.361 5.361 5 C 0.348 3.652 6 O -0.417 6.417 7 C -0.136 4.136 8 C -0.103 4.103 9 C -0.145 4.145 10 C -0.114 4.114 11 C -0.148 4.148 12 C -0.079 4.079 13 C 0.294 3.706 14 O -0.429 6.429 15 N -0.325 5.325 16 C -0.021 4.021 17 C -0.173 4.173 18 C -0.152 4.152 19 C 0.021 3.979 20 H 0.048 0.952 21 C -0.553 4.553 22 H 0.076 0.924 23 C -0.138 4.138 24 N -0.527 5.527 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 C -0.004 4.004 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.248 0.752 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.004 1.504 -22.163 22.572 hybrid contribution 0.307 -0.769 1.058 1.344 sum 4.311 0.735 -21.105 21.553 Atomic orbital electron populations 1.22107 0.92395 1.03452 1.03697 1.20872 0.96133 0.97866 0.83560 0.87154 1.45749 1.66829 1.14954 1.08560 1.18265 0.77510 0.86431 0.82953 1.90762 1.50496 1.15439 1.85030 1.19937 1.04750 0.94559 0.94333 1.21439 0.96326 0.93424 0.99094 1.21147 1.00290 1.00431 0.92671 1.21397 0.97528 0.94532 0.97966 1.21169 1.00202 0.94908 0.98556 1.21301 0.95065 1.00487 0.91035 1.20356 0.78553 0.86992 0.84681 1.90641 1.49740 1.17353 1.85202 1.48260 1.65666 1.10607 1.07975 1.21906 0.99287 0.80859 1.00044 1.22010 0.97530 1.00324 0.97388 1.21647 1.01183 0.97256 0.95074 1.18985 0.93561 0.93061 0.92296 0.95213 1.21097 1.03944 1.35929 0.94296 0.92408 1.24938 0.94830 0.95141 0.98923 1.69877 1.09814 1.43002 1.29989 0.86520 0.78794 0.78975 0.83624 1.19730 1.21019 1.21015 1.22069 0.99111 0.96766 0.82404 0.90350 0.90934 0.91555 0.75230 0.85259 0.85260 0.85579 0.85306 0.84578 0.90761 0.91483 0.92233 0.92208 0.88491 0.94497 0.92985 0.92449 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.23 37.16 0.34 -1.70 16 2 C 0.12 1.74 2.12 -69.08 -0.15 1.60 16 3 H 0.11 1.53 5.94 -51.93 -0.31 1.22 16 4 N -0.71 -9.27 4.99 -55.88 -0.28 -9.55 16 5 C 0.56 7.48 7.74 -12.33 -0.10 7.39 16 6 O -0.54 -8.53 16.01 5.32 0.09 -8.44 16 7 C -0.13 -1.47 5.87 -104.97 -0.62 -2.09 16 8 C -0.08 -0.78 9.54 -39.18 -0.37 -1.16 16 9 C -0.13 -0.97 10.03 -39.64 -0.40 -1.37 16 10 C -0.10 -0.67 10.04 -39.49 -0.40 -1.06 16 11 C -0.13 -0.99 10.03 -39.64 -0.40 -1.39 16 12 C -0.06 -0.59 9.60 -39.18 -0.38 -0.97 16 13 C 0.51 8.74 6.93 -10.99 -0.08 8.67 16 14 O -0.55 -10.86 15.37 5.56 0.09 -10.77 16 15 N -0.59 -10.55 2.97 -172.77 -0.51 -11.06 16 16 C 0.10 1.54 5.91 -3.71 -0.02 1.52 16 17 C -0.13 -2.28 6.08 -26.61 -0.16 -2.45 16 18 C -0.11 -2.46 4.96 -26.69 -0.13 -2.59 16 19 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 20 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.51 -13.58 8.57 -34.44 -0.30 -13.88 16 22 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 23 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 24 N -0.89 -24.42 11.31 55.43 0.63 -23.80 16 25 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 C 0.12 2.44 5.64 -3.71 -0.02 2.42 16 30 H 0.08 1.01 7.45 -51.93 -0.39 0.62 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.41 5.07 5.78 -40.82 -0.24 4.84 16 34 H 0.13 1.08 6.41 -52.49 -0.34 0.74 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.14 1.32 7.65 -52.49 -0.40 0.92 16 39 H 0.07 0.94 5.08 -51.93 -0.26 0.68 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.10 2.40 6.03 -51.93 -0.31 2.08 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.08 1.78 7.04 -51.93 -0.37 1.41 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -30.74 378.10 -9.59 -40.33 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.80 Total: 6.55 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -3.47 Total: -4.71 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.17 Total: -44.41 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.17 Total: -19.21 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.74 -9.59 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597918506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.230 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds