Wall clock time and date at job start Tue Mar 31 2020 16:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47219 * 2 1 4 4 N 1.46505 * 109.46905 * 239.99793 * 2 1 3 5 5 C 1.34777 * 119.99826 * 85.00163 * 4 2 1 6 6 O 1.21548 * 119.99907 * 359.97438 * 5 4 2 7 7 C 1.47847 * 119.99800 * 179.97438 * 5 4 2 8 8 C 1.39575 * 120.14360 * 359.72200 * 7 5 4 9 9 C 1.37962 * 119.85059 * 179.78825 * 8 7 5 10 10 C 1.38359 * 120.14367 * 0.48946 * 9 8 7 11 11 C 1.38355 * 120.29244 * 359.74284 * 10 9 8 12 12 C 1.37959 * 120.14975 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47025 * 119.99762 * 2 1 3 14 14 O 1.21278 * 119.99922 * 99.20603 * 13 2 1 15 15 N 1.34771 * 120.00145 * 279.20167 * 13 2 1 16 16 C 1.46927 * 120.62794 * 354.99951 * 15 13 2 17 17 C 1.53190 * 108.77459 * 126.43317 * 16 15 13 18 18 C 1.53035 * 109.31745 * 54.63156 * 17 16 15 19 19 C 1.53046 * 109.53760 * 298.63818 * 18 17 16 20 20 H 1.08999 * 109.49361 * 301.37372 * 19 18 17 21 21 C 1.50698 * 109.49704 * 181.31468 * 19 18 17 22 22 H 1.08004 * 120.00064 * 240.06030 * 21 19 18 23 23 C 1.37879 * 120.00198 * 59.78847 * 21 19 18 24 24 N 1.31514 * 119.99842 * 0.27217 * 23 21 19 25 25 Si 1.86801 * 120.00105 * 180.27605 * 23 21 19 26 26 H 1.48501 * 109.46860 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47529 * 119.99786 * 25 23 21 28 28 H 1.48507 * 109.47012 * 240.00057 * 25 23 21 29 29 C 1.46931 * 120.60461 * 175.01637 * 15 13 2 30 30 H 1.09005 * 109.47207 * 295.34627 * 1 2 3 31 31 H 1.08997 * 109.47575 * 55.34999 * 1 2 3 32 32 H 1.09007 * 109.47338 * 175.35228 * 1 2 3 33 33 H 0.96994 * 119.99593 * 264.99771 * 4 2 1 34 34 H 1.08000 * 120.07451 * 0.02562 * 8 7 5 35 35 H 1.07998 * 119.92619 * 180.23330 * 9 8 7 36 36 H 1.07997 * 119.84815 * 179.76165 * 10 9 8 37 37 H 1.07996 * 119.92581 * 180.02562 * 11 10 9 38 38 H 1.07996 * 120.08010 * 179.97438 * 12 11 10 39 39 H 1.08994 * 109.59184 * 6.63953 * 16 15 13 40 40 H 1.09001 * 109.58514 * 246.21418 * 16 15 13 41 41 H 1.09001 * 109.50116 * 294.67969 * 17 16 15 42 42 H 1.09005 * 109.52738 * 174.59935 * 17 16 15 43 43 H 1.09006 * 109.46602 * 178.61357 * 18 17 16 44 44 H 1.09000 * 109.46180 * 58.65584 * 18 17 16 45 45 H 0.97005 * 119.99831 * 179.97438 * 24 23 21 46 46 H 1.08998 * 109.55817 * 113.77044 * 29 15 13 47 47 H 1.09002 * 109.61529 * 353.34066 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8575 1.1609 -2.4118 7 6 2.6403 -0.7152 -3.5642 8 6 2.9791 -2.0679 -3.5033 9 6 3.4346 -2.7132 -4.6344 10 6 3.5656 -2.0201 -5.8246 11 6 3.2361 -0.6780 -5.8905 12 6 2.7748 -0.0218 -4.7681 13 6 2.0323 -0.7104 1.2305 14 8 2.3928 -1.8661 1.1588 15 7 2.0810 -0.0613 2.4107 16 6 1.7520 1.3683 2.4928 17 6 0.6730 1.5653 3.5622 18 6 1.1499 0.9533 4.8813 19 6 1.3777 -0.5488 4.6959 20 1 0.4506 -1.0196 4.3688 21 6 1.8162 -1.1562 6.0034 22 1 2.7731 -1.6519 6.0746 23 6 0.9983 -1.0742 7.1104 24 7 -0.1669 -0.4706 7.0237 25 14 1.5453 -1.8205 8.7332 26 1 2.8857 -2.4378 8.5672 27 1 1.6138 -0.7581 9.7685 28 1 0.5710 -2.8594 9.1536 29 6 2.4644 -0.7704 3.6391 30 1 -0.3634 0.4399 0.9288 31 1 -0.3634 0.5843 -0.8454 32 1 -0.3634 -1.0243 -0.0833 33 1 2.2490 -1.6318 -1.1525 34 1 2.8812 -2.6090 -2.5738 35 1 3.6935 -3.7608 -4.5896 36 1 3.9263 -2.5291 -6.7062 37 1 3.3402 -0.1428 -6.8228 38 1 2.5183 1.0259 -4.8207 39 1 1.3784 1.7133 1.5288 40 1 2.6436 1.9333 2.7649 41 1 -0.2473 1.0747 3.2453 42 1 0.4881 2.6305 3.7013 43 1 0.3943 1.1138 5.6504 44 1 2.0833 1.4272 5.1851 45 1 -0.7425 -0.4133 7.8025 46 1 3.4143 -0.3801 4.0043 47 1 2.5603 -1.8362 3.4316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597918506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:44 Heat of formation + Delta-G solvation = -69.335122 kcal Electronic energy + Delta-G solvation = -28083.575324 eV Core-core repulsion = 24229.996956 eV Total energy + Delta-G solvation = -3853.578368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84165 -40.86894 -39.26810 -38.48325 -36.23627 -35.41255 -33.36719 -32.83164 -31.99354 -31.86957 -30.83416 -27.23371 -26.69239 -25.56158 -24.17234 -23.44568 -23.26668 -21.73740 -21.37543 -20.10270 -19.29891 -18.43113 -18.00275 -17.55387 -17.02492 -16.65725 -16.47365 -16.35173 -15.93609 -15.60781 -15.49956 -15.14948 -15.01503 -14.76133 -14.64616 -14.38309 -14.17326 -14.10790 -13.67106 -13.60824 -13.38580 -13.31011 -12.89786 -12.84898 -12.65020 -12.59678 -12.56480 -12.02395 -11.96200 -11.85696 -11.64036 -11.30379 -11.16464 -10.93040 -10.74131 -10.43226 -10.38985 -9.95739 -9.92011 -9.58171 -8.11082 -6.25611 -0.16498 0.41273 1.39188 1.39598 1.42438 1.52859 1.65894 1.79289 2.24350 2.43575 2.89109 3.15913 3.25752 3.59123 3.86387 3.92740 3.96530 4.02112 4.06521 4.21419 4.24892 4.32308 4.46797 4.48925 4.51587 4.54382 4.60957 4.68445 4.78165 4.83829 4.85557 4.94659 5.03433 5.06044 5.11641 5.14713 5.27619 5.35067 5.44136 5.45583 5.50832 5.52540 5.61770 5.93068 5.94708 6.12751 6.33685 6.34649 6.40227 6.83084 6.98176 7.02281 7.42512 8.92680 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.026660 B = 0.002376 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.013965 B =11780.524103 C =12471.298562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.133 3.867 3 H 0.119 0.881 4 N -0.706 5.706 5 C 0.562 3.438 6 O -0.569 6.569 7 C -0.157 4.157 8 C -0.092 4.092 9 C -0.130 4.130 10 C -0.088 4.088 11 C -0.129 4.129 12 C -0.074 4.074 13 C 0.507 3.493 14 O -0.579 6.579 15 N -0.598 5.598 16 C 0.103 3.897 17 C -0.126 4.126 18 C -0.107 4.107 19 C 0.042 3.958 20 H -0.009 1.009 21 C -0.535 4.535 22 H 0.052 0.948 23 C 0.017 3.983 24 N -0.912 5.912 25 Si 0.953 3.047 26 H -0.269 1.269 27 H -0.278 1.278 28 H -0.283 1.283 29 C 0.131 3.869 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.412 0.588 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.261 0.739 46 H 0.062 0.938 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 1.470 -24.292 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 H 0.137 0.863 4 N -0.359 5.359 5 C 0.351 3.649 6 O -0.449 6.449 7 C -0.160 4.160 8 C -0.111 4.111 9 C -0.148 4.148 10 C -0.106 4.106 11 C -0.147 4.147 12 C -0.093 4.093 13 C 0.294 3.706 14 O -0.460 6.460 15 N -0.328 5.328 16 C -0.019 4.019 17 C -0.164 4.164 18 C -0.145 4.145 19 C 0.022 3.978 20 H 0.009 0.991 21 C -0.574 4.574 22 H 0.071 0.929 23 C -0.182 4.182 24 N -0.551 5.551 25 Si 0.779 3.221 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.209 1.209 29 C 0.009 3.991 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.251 0.749 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.147 0.853 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.936 1.753 -24.208 24.768 hybrid contribution 0.031 -0.911 1.623 1.861 sum 4.966 0.842 -22.585 23.140 Atomic orbital electron populations 1.22076 0.91347 1.03452 1.04198 1.20798 0.96728 0.97700 0.82328 0.86314 1.45752 1.66808 1.15070 1.08313 1.18646 0.76728 0.86128 0.83396 1.90731 1.52022 1.16661 1.85517 1.19878 1.06900 0.95441 0.93799 1.21560 0.96616 0.92851 1.00089 1.21488 0.99412 1.01604 0.92285 1.21822 0.95822 0.94250 0.98743 1.21489 0.99078 0.95437 0.98689 1.21407 0.95877 1.00455 0.91547 1.20902 0.77686 0.86698 0.85277 1.90623 1.50842 1.18779 1.85744 1.48272 1.65754 1.11668 1.07138 1.22097 0.99468 0.79300 1.01015 1.21906 0.97623 1.01592 0.95256 1.21445 1.00228 0.95968 0.96902 1.18882 0.92569 0.94180 0.92131 0.99056 1.21449 1.03888 1.36257 0.95801 0.92930 1.25664 0.94943 0.95589 1.02003 1.70006 1.10583 1.43740 1.30767 0.85578 0.78380 0.78242 0.79877 1.19331 1.20328 1.20907 1.21631 0.98250 0.96082 0.83149 0.90123 0.89962 0.91964 0.74882 0.85053 0.82966 0.82405 0.82756 0.85260 0.87582 0.89754 0.93049 0.89221 0.91743 0.94460 0.92953 0.91932 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.23 71.98 0.66 -3.11 16 2 C 0.13 3.62 2.12 44.24 0.09 3.71 16 3 H 0.12 3.07 5.94 -2.39 -0.01 3.06 16 4 N -0.71 -18.26 4.99 -448.97 -2.24 -20.50 16 5 C 0.56 14.84 7.74 86.79 0.67 15.51 16 6 O -0.57 -17.83 16.01 -3.87 -0.06 -17.89 16 7 C -0.16 -3.40 5.87 -20.09 -0.12 -3.52 16 8 C -0.09 -1.62 9.54 22.53 0.21 -1.41 16 9 C -0.13 -1.66 10.03 22.23 0.22 -1.44 16 10 C -0.09 -0.94 10.04 22.33 0.22 -0.72 16 11 C -0.13 -1.64 10.03 22.23 0.22 -1.42 16 12 C -0.07 -1.39 9.60 22.53 0.22 -1.17 16 13 C 0.51 17.31 6.93 87.66 0.61 17.92 16 14 O -0.58 -23.15 15.37 -3.02 -0.05 -23.20 16 15 N -0.60 -20.98 2.97 -818.91 -2.43 -23.41 16 16 C 0.10 2.90 5.91 86.36 0.51 3.41 16 17 C -0.13 -4.12 6.08 30.67 0.19 -3.94 16 18 C -0.11 -4.70 4.96 30.62 0.15 -4.54 16 19 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 20 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 21 C -0.54 -29.08 8.57 25.60 0.22 -28.86 16 22 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 23 C 0.02 0.94 5.30 84.66 0.45 1.39 16 24 N -0.91 -51.35 11.31 21.45 0.24 -51.11 16 25 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 29 C 0.13 5.57 5.64 86.36 0.49 6.06 16 30 H 0.08 1.96 7.45 -2.38 -0.02 1.95 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.41 10.22 5.78 -92.71 -0.54 9.68 16 34 H 0.13 2.14 6.41 -2.91 -0.02 2.12 16 35 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 37 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.13 2.51 7.65 -2.91 -0.02 2.49 16 39 H 0.11 2.38 5.08 -2.39 -0.01 2.37 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.06 3.26 6.03 -2.38 -0.01 3.25 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 46 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.06 2.72 7.04 -2.39 -0.02 2.70 16 Total: -1.00 -68.73 378.10 2.93 -65.79 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.45 Total: 25.26 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 5.00 Total: -0.11 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -4.43 Total: -95.02 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.11 Total: -41.09 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -68.73 2.93 -65.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597918506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.542 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds