Wall clock time and date at job start Tue Mar 31 2020 15:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47766 * 2 1 4 4 C 1.50706 * 109.46709 * 119.99822 * 2 1 3 5 5 H 1.07997 * 120.00348 * 120.00443 * 4 2 1 6 6 C 1.37873 * 119.99795 * 299.99366 * 4 2 1 7 7 N 1.31518 * 120.00431 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46995 * 59.99932 * 8 6 4 10 10 H 1.48497 * 109.47400 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46727 * 300.00191 * 8 6 4 12 12 N 1.46502 * 109.47317 * 239.99267 * 2 1 3 13 13 C 1.46499 * 119.99922 * 300.00392 * 12 2 1 14 14 C 1.34780 * 119.99713 * 120.00495 * 12 2 1 15 15 O 1.21278 * 119.99667 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99732 * 180.02562 * 14 12 2 17 17 H 1.09004 * 110.91861 * 62.44806 * 16 14 12 18 18 C 1.55153 * 111.00166 * 186.34842 * 16 14 12 19 19 C 1.54325 * 102.94168 * 153.57673 * 18 16 14 20 20 N 1.47292 * 107.30618 * 337.81362 * 19 18 16 21 21 C 1.34773 * 125.79249 * 178.92804 * 20 19 18 22 22 O 1.21559 * 119.99951 * 174.89611 * 21 20 19 23 23 C 1.47850 * 120.00102 * 354.88997 * 21 20 19 24 24 C 1.39577 * 120.14133 * 187.71838 * 23 21 20 25 25 C 1.37958 * 119.85000 * 179.79747 * 24 23 21 26 26 C 1.38364 * 120.14394 * 0.48024 * 25 24 23 27 27 C 1.38360 * 120.28988 * 359.74714 * 26 25 24 28 28 C 1.37954 * 120.15025 * 0.02562 * 27 26 25 29 29 C 1.47431 * 108.55694 * 358.92806 * 20 19 18 30 30 H 1.08994 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47000 * 300.00768 * 1 2 3 32 32 H 1.09004 * 109.46573 * 60.00495 * 1 2 3 33 33 H 0.96994 * 120.00175 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47027 * 269.99537 * 13 12 2 35 35 H 1.09000 * 109.46979 * 30.00388 * 13 12 2 36 36 H 1.09008 * 109.46685 * 149.99735 * 13 12 2 37 37 H 1.09001 * 110.71973 * 271.93365 * 18 16 14 38 38 H 1.08995 * 110.72176 * 35.20917 * 18 16 14 39 39 H 1.09000 * 109.88424 * 97.22439 * 19 18 16 40 40 H 1.08997 * 109.88043 * 218.38724 * 19 18 16 41 41 H 1.08001 * 120.07707 * 359.97438 * 24 23 21 42 42 H 1.07999 * 119.93106 * 180.22991 * 25 24 23 43 43 H 1.07998 * 119.85412 * 179.72669 * 26 25 24 44 44 H 1.08006 * 119.92231 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.07818 * 179.97438 * 28 27 26 46 46 H 1.08994 * 110.36139 * 265.25908 * 29 20 19 47 47 H 1.08998 * 110.36705 * 143.04720 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.8073 -1.1189 4.0079 10 1 1.8268 -0.4196 5.2205 11 1 1.8276 -2.5196 4.0084 12 7 2.0184 -0.6908 -1.1961 13 6 1.6644 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0832 15 8 3.0859 1.1254 -1.8915 16 6 3.2952 -0.7462 -3.3139 17 1 2.4657 -1.0612 -3.9470 18 6 4.2902 0.1449 -4.1034 19 6 5.1690 -0.8876 -4.8405 20 7 5.0670 -2.1573 -4.1009 21 6 5.6719 -3.3145 -4.4344 22 8 5.5904 -4.2775 -3.6970 23 6 6.4347 -3.4129 -5.6971 24 6 6.9257 -4.6474 -6.1250 25 6 7.6330 -4.7330 -7.3064 26 6 7.8645 -3.5969 -8.0615 27 6 7.3846 -2.3693 -7.6405 28 6 6.6718 -2.2707 -6.4635 29 6 4.1915 -1.9509 -2.9328 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 0.7082 1.1612 3.4843 34 1 2.4157 -2.7378 -0.9714 35 1 0.6903 -2.3002 -0.9845 36 1 1.6238 -2.2854 -2.5000 37 1 3.7600 0.7779 -4.8149 38 1 4.8917 0.7476 -3.4230 39 1 4.8066 -1.0227 -5.8596 40 1 6.2050 -0.5494 -4.8550 41 1 6.7498 -5.5341 -5.5341 42 1 8.0103 -5.6881 -7.6406 43 1 8.4226 -3.6685 -8.9833 44 1 7.5691 -1.4863 -8.2343 45 1 6.2981 -1.3119 -6.1358 46 1 4.7860 -1.7171 -2.0498 47 1 3.5813 -2.8364 -2.7549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599329448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:35 Heat of formation + Delta-G solvation = -12.011950 kcal Electronic energy + Delta-G solvation = -28336.287584 eV Core-core repulsion = 24485.194935 eV Total energy + Delta-G solvation = -3851.092649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.85263 -39.51951 -38.37489 -37.12710 -35.39668 -33.12245 -32.42263 -31.28236 -30.98184 -29.94242 -28.53471 -26.28571 -25.33172 -25.14627 -23.39288 -22.71092 -22.16715 -20.46548 -20.10510 -18.44265 -17.56810 -17.08648 -16.72892 -16.26331 -16.12870 -15.66182 -15.15839 -14.96933 -14.76761 -14.39608 -14.28366 -13.96081 -13.81431 -13.50210 -13.12373 -13.07552 -12.87098 -12.63867 -12.62573 -12.23909 -12.10834 -11.69314 -11.59250 -11.47216 -11.19795 -11.05317 -10.96309 -10.81271 -10.80770 -10.66544 -10.27303 -10.16090 -10.06635 -9.32053 -9.29598 -9.20760 -9.01777 -8.80413 -8.43208 -7.64091 -6.07805 -4.15830 0.57989 1.04273 2.65775 2.70303 3.26006 3.29297 3.33785 3.37000 3.58952 3.83175 4.15915 4.34854 4.40405 4.47851 4.60393 4.70880 4.75821 4.83472 5.03665 5.06244 5.10309 5.14827 5.23295 5.25804 5.36320 5.47593 5.64291 5.64999 5.71905 5.79521 5.89680 5.93593 6.01567 6.04763 6.10864 6.11995 6.19720 6.30116 6.56204 6.74240 6.79463 7.03066 7.30299 7.38216 7.48747 7.70312 7.98176 7.99368 8.17532 8.48040 8.80380 8.98285 9.50844 10.97424 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.002664 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.649706 B =10508.867794 C =11223.537611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.588 5.588 13 C 0.082 3.918 14 C 0.515 3.485 15 O -0.548 6.548 16 C -0.124 4.124 17 H 0.106 0.894 18 C -0.114 4.114 19 C 0.089 3.911 20 N -0.612 5.612 21 C 0.572 3.428 22 O -0.535 6.535 23 C -0.129 4.129 24 C -0.061 4.061 25 C -0.130 4.130 26 C -0.098 4.098 27 C -0.130 4.130 28 C -0.124 4.124 29 C 0.117 3.883 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.011 0.989 33 H 0.264 0.736 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.161 0.839 46 H 0.078 0.922 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.353 -6.786 -22.084 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.062 4.062 14 C 0.300 3.700 15 O -0.426 6.426 16 C -0.146 4.146 17 H 0.124 0.876 18 C -0.152 4.152 19 C -0.033 4.033 20 N -0.346 5.346 21 C 0.362 3.638 22 O -0.412 6.412 23 C -0.132 4.132 24 C -0.080 4.080 25 C -0.148 4.148 26 C -0.117 4.117 27 C -0.148 4.148 28 C -0.141 4.141 29 C -0.006 4.006 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.178 0.822 46 H 0.097 0.903 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.382 -6.648 -21.408 24.301 hybrid contribution 0.281 -0.619 0.817 1.063 sum 9.663 -7.267 -20.591 23.879 Atomic orbital electron populations 1.22099 0.98192 0.99415 1.00882 1.18965 0.90895 0.94482 0.79882 0.91833 1.21276 1.31911 1.13012 0.90257 0.92287 1.24883 0.94922 0.94959 0.98961 1.69864 1.36304 1.22601 1.23885 0.86559 0.79293 0.79613 0.81958 1.20218 1.21181 1.20204 1.48249 1.48571 1.11633 1.23445 1.21700 1.01918 0.83226 0.99329 1.19874 0.79380 0.86949 0.83785 1.90657 1.58484 1.16942 1.76552 1.22527 0.98718 0.96180 0.97181 0.87626 1.22603 0.96761 0.96478 0.99356 1.22694 1.00514 0.83911 0.96215 1.48421 1.48663 1.09693 1.27800 1.17986 0.78874 0.81394 0.85586 1.90798 1.61451 1.36574 1.52413 1.19897 1.02392 0.95015 0.95850 1.21310 0.94235 0.97081 0.95410 1.21161 0.99672 0.98980 0.95037 1.21412 0.98074 0.92821 0.99360 1.21184 0.98788 0.97975 0.96805 1.22786 0.96917 1.00033 0.94372 1.22345 0.91886 0.97945 0.88377 0.95058 0.88746 0.96973 0.92626 0.92921 0.90676 0.92893 0.89224 0.88752 0.90130 0.90069 0.84708 0.85384 0.85727 0.85425 0.82225 0.90327 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.95 37.16 0.33 -3.13 16 2 C 0.26 6.47 2.64 -69.08 -0.18 6.28 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -14.13 8.37 -34.44 -0.29 -14.42 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.59 -12.11 2.75 -175.26 -0.48 -12.59 16 13 C 0.08 1.36 8.13 59.85 0.49 1.85 16 14 C 0.51 9.97 7.08 -10.98 -0.08 9.89 16 15 O -0.55 -12.68 15.12 5.56 0.08 -12.60 16 16 C -0.12 -1.70 2.45 -89.63 -0.22 -1.92 16 17 H 0.11 1.25 7.57 -51.93 -0.39 0.86 16 18 C -0.11 -1.29 6.03 -24.90 -0.15 -1.44 16 19 C 0.09 0.82 4.88 -2.92 -0.01 0.81 16 20 N -0.61 -7.71 3.34 -174.33 -0.58 -8.29 16 21 C 0.57 8.00 7.81 -12.33 -0.10 7.90 16 22 O -0.53 -9.34 16.67 5.31 0.09 -9.25 16 23 C -0.13 -1.45 5.87 -104.97 -0.62 -2.06 16 24 C -0.06 -0.63 9.59 -39.18 -0.38 -1.01 16 25 C -0.13 -1.03 10.03 -39.64 -0.40 -1.42 16 26 C -0.10 -0.68 10.04 -39.49 -0.40 -1.08 16 27 C -0.13 -0.93 10.03 -39.64 -0.40 -1.32 16 28 C -0.12 -1.07 8.61 -39.19 -0.34 -1.41 16 29 C 0.12 1.65 5.40 -2.53 -0.01 1.64 16 30 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 31 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 34 H 0.05 0.87 7.64 -51.93 -0.40 0.47 16 35 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16 36 H 0.05 0.70 5.95 -51.92 -0.31 0.39 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.25 7.50 -51.93 -0.39 0.86 16 39 H 0.08 0.58 6.69 -51.93 -0.35 0.23 16 40 H 0.08 0.64 6.80 -51.93 -0.35 0.28 16 41 H 0.14 1.41 7.67 -52.49 -0.40 1.01 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.56 8.06 -52.49 -0.42 0.13 16 44 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 45 H 0.16 1.13 2.78 -56.29 -0.16 0.97 16 46 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 47 H 0.09 1.29 6.17 -51.93 -0.32 0.97 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -33.40 370.55 -9.03 -42.43 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.49 Total: 2.10 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.84 Total: 0.83 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.44 Total: -45.27 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.17 Total: -21.84 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.40 -9.03 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599329448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.418 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds