Wall clock time and date at job start Tue Mar 31 2020 15:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47766 * 2 1 4 4 C 1.50706 * 109.46709 * 119.99822 * 2 1 3 5 5 H 1.07997 * 120.00348 * 120.00443 * 4 2 1 6 6 C 1.37873 * 119.99795 * 299.99366 * 4 2 1 7 7 N 1.31518 * 120.00431 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46995 * 59.99932 * 8 6 4 10 10 H 1.48497 * 109.47400 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46727 * 300.00191 * 8 6 4 12 12 N 1.46502 * 109.47317 * 239.99267 * 2 1 3 13 13 C 1.46499 * 119.99922 * 300.00392 * 12 2 1 14 14 C 1.34780 * 119.99713 * 120.00495 * 12 2 1 15 15 O 1.21278 * 119.99667 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99732 * 180.02562 * 14 12 2 17 17 H 1.09004 * 110.91861 * 62.44806 * 16 14 12 18 18 C 1.55153 * 111.00166 * 186.34842 * 16 14 12 19 19 C 1.54325 * 102.94168 * 153.57673 * 18 16 14 20 20 N 1.47292 * 107.30618 * 337.81362 * 19 18 16 21 21 C 1.34773 * 125.79249 * 178.92804 * 20 19 18 22 22 O 1.21559 * 119.99951 * 174.89611 * 21 20 19 23 23 C 1.47850 * 120.00102 * 354.88997 * 21 20 19 24 24 C 1.39577 * 120.14133 * 187.71838 * 23 21 20 25 25 C 1.37958 * 119.85000 * 179.79747 * 24 23 21 26 26 C 1.38364 * 120.14394 * 0.48024 * 25 24 23 27 27 C 1.38360 * 120.28988 * 359.74714 * 26 25 24 28 28 C 1.37954 * 120.15025 * 0.02562 * 27 26 25 29 29 C 1.47431 * 108.55694 * 358.92806 * 20 19 18 30 30 H 1.08994 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47000 * 300.00768 * 1 2 3 32 32 H 1.09004 * 109.46573 * 60.00495 * 1 2 3 33 33 H 0.96994 * 120.00175 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47027 * 269.99537 * 13 12 2 35 35 H 1.09000 * 109.46979 * 30.00388 * 13 12 2 36 36 H 1.09008 * 109.46685 * 149.99735 * 13 12 2 37 37 H 1.09001 * 110.71973 * 271.93365 * 18 16 14 38 38 H 1.08995 * 110.72176 * 35.20917 * 18 16 14 39 39 H 1.09000 * 109.88424 * 97.22439 * 19 18 16 40 40 H 1.08997 * 109.88043 * 218.38724 * 19 18 16 41 41 H 1.08001 * 120.07707 * 359.97438 * 24 23 21 42 42 H 1.07999 * 119.93106 * 180.22991 * 25 24 23 43 43 H 1.07998 * 119.85412 * 179.72669 * 26 25 24 44 44 H 1.08006 * 119.92231 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.07818 * 179.97438 * 28 27 26 46 46 H 1.08994 * 110.36139 * 265.25908 * 29 20 19 47 47 H 1.08998 * 110.36705 * 143.04720 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.8073 -1.1189 4.0079 10 1 1.8268 -0.4196 5.2205 11 1 1.8276 -2.5196 4.0084 12 7 2.0184 -0.6908 -1.1961 13 6 1.6644 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0832 15 8 3.0859 1.1254 -1.8915 16 6 3.2952 -0.7462 -3.3139 17 1 2.4657 -1.0612 -3.9470 18 6 4.2902 0.1449 -4.1034 19 6 5.1690 -0.8876 -4.8405 20 7 5.0670 -2.1573 -4.1009 21 6 5.6719 -3.3145 -4.4344 22 8 5.5904 -4.2775 -3.6970 23 6 6.4347 -3.4129 -5.6971 24 6 6.9257 -4.6474 -6.1250 25 6 7.6330 -4.7330 -7.3064 26 6 7.8645 -3.5969 -8.0615 27 6 7.3846 -2.3693 -7.6405 28 6 6.6718 -2.2707 -6.4635 29 6 4.1915 -1.9509 -2.9328 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 0.7082 1.1612 3.4843 34 1 2.4157 -2.7378 -0.9714 35 1 0.6903 -2.3002 -0.9845 36 1 1.6238 -2.2854 -2.5000 37 1 3.7600 0.7779 -4.8149 38 1 4.8917 0.7476 -3.4230 39 1 4.8066 -1.0227 -5.8596 40 1 6.2050 -0.5494 -4.8550 41 1 6.7498 -5.5341 -5.5341 42 1 8.0103 -5.6881 -7.6406 43 1 8.4226 -3.6685 -8.9833 44 1 7.5691 -1.4863 -8.2343 45 1 6.2981 -1.3119 -6.1358 46 1 4.7860 -1.7171 -2.0498 47 1 3.5813 -2.8364 -2.7549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599329448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:34 Heat of formation + Delta-G solvation = -32.732573 kcal Electronic energy + Delta-G solvation = -28337.186097 eV Core-core repulsion = 24485.194935 eV Total energy + Delta-G solvation = -3851.991162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87643 -40.80471 -39.25418 -38.29782 -37.15025 -34.90757 -33.58834 -31.92479 -31.85667 -31.48362 -29.77406 -27.75418 -27.30917 -26.24867 -24.45917 -23.51552 -23.10730 -21.97565 -21.00991 -19.91978 -18.70131 -18.43097 -18.05668 -17.45583 -17.39948 -16.94745 -16.57794 -16.20609 -16.03522 -15.44910 -15.28638 -15.07546 -14.65681 -14.58365 -14.46599 -14.32446 -14.15416 -14.04634 -13.60493 -13.49439 -13.41965 -13.08333 -12.91800 -12.84767 -12.70164 -12.66351 -12.35739 -12.26922 -12.17283 -12.10004 -11.90170 -11.57741 -11.19698 -11.08221 -10.69207 -10.49295 -10.04507 -9.92046 -9.73822 -9.36663 -8.16537 -6.32539 -0.12652 0.44698 1.39036 1.40669 1.47869 1.57698 1.78334 1.86745 2.28691 2.46794 2.90413 3.11111 3.21777 3.35869 3.61095 3.77202 3.96849 4.03799 4.05258 4.13511 4.19071 4.27832 4.38819 4.47158 4.51955 4.57257 4.59511 4.63652 4.73352 4.76828 4.81899 4.88892 4.99243 5.00575 5.05302 5.06732 5.09886 5.21638 5.40465 5.45113 5.46233 5.54121 5.60465 5.65289 5.99021 6.01678 6.15204 6.33708 6.74731 6.79288 6.96352 7.28349 7.44324 8.87322 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.002664 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.649706 B =10508.867794 C =11223.537611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.013 0.987 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.959 3.041 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.265 1.265 12 N -0.598 5.598 13 C 0.082 3.918 14 C 0.507 3.493 15 O -0.593 6.593 16 C -0.110 4.110 17 H 0.138 0.862 18 C -0.110 4.110 19 C 0.091 3.909 20 N -0.611 5.611 21 C 0.566 3.434 22 O -0.585 6.585 23 C -0.153 4.153 24 C -0.082 4.082 25 C -0.132 4.132 26 C -0.092 4.092 27 C -0.127 4.127 28 C -0.123 4.123 29 C 0.120 3.880 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.265 0.735 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.160 0.840 45 H 0.176 0.824 46 H 0.049 0.951 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 -7.493 -25.421 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.031 0.969 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.190 1.190 12 N -0.327 5.327 13 C -0.061 4.061 14 C 0.295 3.705 15 O -0.474 6.474 16 C -0.132 4.132 17 H 0.156 0.844 18 C -0.148 4.148 19 C -0.030 4.030 20 N -0.343 5.343 21 C 0.358 3.642 22 O -0.466 6.466 23 C -0.156 4.156 24 C -0.101 4.101 25 C -0.150 4.150 26 C -0.110 4.110 27 C -0.145 4.145 28 C -0.140 4.140 29 C -0.003 4.003 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.166 0.834 43 H 0.174 0.826 44 H 0.178 0.822 45 H 0.193 0.807 46 H 0.067 0.933 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.352 -7.360 -24.785 27.850 hybrid contribution 0.049 -0.367 1.785 1.823 sum 10.402 -7.727 -22.999 26.398 Atomic orbital electron populations 1.21878 0.96997 1.00115 1.00166 1.18544 0.91747 0.92240 0.81511 0.96893 1.21531 1.31934 1.12976 0.91366 0.92650 1.25665 0.95098 0.95631 1.01792 1.69996 1.37138 1.23713 1.24487 0.85595 0.78364 0.79015 0.78563 1.20505 1.20593 1.19010 1.48234 1.48935 1.13097 1.22462 1.21881 1.01527 0.80693 1.01986 1.20813 0.78204 0.86608 0.84839 1.90629 1.59800 1.19207 1.77805 1.22454 1.00010 0.95906 0.94798 0.84406 1.22634 0.96237 0.96699 0.99228 1.22958 1.01490 0.81550 0.96976 1.48456 1.47901 1.10616 1.27334 1.18548 0.78555 0.80879 0.86176 1.90758 1.63417 1.38302 1.54134 1.19801 1.03930 0.96520 0.95363 1.21360 0.95630 0.96506 0.96638 1.21430 0.98877 1.00647 0.94065 1.21852 0.97011 0.92216 0.99924 1.21600 0.97428 0.99290 0.96177 1.22953 0.96939 0.99532 0.94568 1.22131 0.91919 0.97930 0.88357 0.93498 0.91365 0.95703 0.92575 0.93273 0.90823 0.88872 0.86628 0.91206 0.86600 0.88125 0.86364 0.83372 0.82611 0.82241 0.80725 0.93290 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.95 71.98 0.64 -5.73 16 2 C 0.26 13.61 2.64 44.25 0.12 13.73 16 3 H 0.01 0.81 6.90 -2.39 -0.02 0.79 16 4 C -0.54 -29.83 8.37 25.60 0.21 -29.62 16 5 H 0.06 3.02 7.65 -2.91 -0.02 3.00 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -52.97 11.32 21.45 0.24 -52.72 16 8 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 N -0.60 -25.00 2.75 -826.79 -2.28 -27.27 16 13 C 0.08 2.65 8.13 127.77 1.04 3.69 16 14 C 0.51 19.95 7.08 87.66 0.62 20.57 16 15 O -0.59 -28.54 15.12 -3.02 -0.05 -28.58 16 16 C -0.11 -2.88 2.45 -10.15 -0.02 -2.90 16 17 H 0.14 2.79 7.57 -2.39 -0.02 2.77 16 18 C -0.11 -2.27 6.03 31.78 0.19 -2.08 16 19 C 0.09 1.42 4.88 86.68 0.42 1.84 16 20 N -0.61 -14.71 3.34 -823.72 -2.75 -17.46 16 21 C 0.57 15.80 7.81 86.79 0.68 16.47 16 22 O -0.58 -21.27 16.67 -3.90 -0.07 -21.33 16 23 C -0.15 -3.27 5.87 -20.09 -0.12 -3.38 16 24 C -0.08 -1.65 9.59 22.53 0.22 -1.43 16 25 C -0.13 -1.77 10.03 22.23 0.22 -1.54 16 26 C -0.09 -0.89 10.04 22.33 0.22 -0.67 16 27 C -0.13 -1.25 10.03 22.23 0.22 -1.02 16 28 C -0.12 -1.72 8.61 22.53 0.19 -1.53 16 29 C 0.12 3.37 5.40 86.85 0.47 3.84 16 30 H 0.05 2.04 6.66 -2.39 -0.02 2.03 16 31 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.05 1.63 7.64 -2.39 -0.02 1.61 16 35 H 0.07 2.41 6.43 -2.39 -0.02 2.39 16 36 H 0.09 2.25 5.95 -2.38 -0.01 2.24 16 37 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.82 7.50 -2.39 -0.02 1.80 16 39 H 0.12 1.10 6.69 -2.39 -0.02 1.08 16 40 H 0.10 1.25 6.80 -2.39 -0.02 1.23 16 41 H 0.12 2.64 7.67 -2.91 -0.02 2.62 16 42 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 44 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 45 H 0.18 1.73 2.78 -6.48 -0.02 1.72 16 46 H 0.05 1.66 8.03 -2.39 -0.02 1.64 16 47 H 0.09 2.51 6.17 -2.39 -0.01 2.50 16 Total: -1.00 -78.43 370.55 3.90 -74.53 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.98 Total: 15.04 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 5.78 Total: 11.68 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -4.78 Total: -97.46 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.11 Total: -49.91 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -78.43 3.90 -74.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599329448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.797 kcal (2) G-P(sol) polarization free energy of solvation -78.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds