Wall clock time and date at job start Tue Mar 31 2020 15:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46945 * 2 1 4 4 C 1.50704 * 109.46925 * 240.00424 * 2 1 3 5 5 O 1.21285 * 119.99472 * 239.99760 * 4 2 1 6 6 N 1.34769 * 120.00359 * 59.99615 * 4 2 1 7 7 C 1.46497 * 120.00374 * 180.02562 * 6 4 2 8 8 H 1.09006 * 109.46697 * 324.99901 * 7 6 4 9 9 C 1.53002 * 109.47570 * 205.00402 * 7 6 4 10 10 C 1.50696 * 109.46997 * 64.99224 * 9 7 6 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 9 7 12 12 C 1.37885 * 119.99717 * 180.02562 * 10 9 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.50699 * 109.47182 * 84.99852 * 7 6 4 19 19 C 1.38237 * 120.00050 * 39.73082 * 18 7 6 20 20 C 1.38231 * 119.99926 * 179.74489 * 19 18 7 21 21 C 1.38237 * 119.99926 * 0.52806 * 20 19 18 22 22 C 1.38231 * 120.00295 * 359.74575 * 21 20 19 23 23 C 1.38237 * 119.99957 * 220.00377 * 18 7 6 24 24 C 1.52995 * 109.47092 * 120.00099 * 2 1 3 25 25 H 1.09007 * 110.21416 * 178.07182 * 24 2 1 26 26 C 1.54482 * 110.24717 * 299.99688 * 24 2 1 27 27 C 1.54630 * 101.76101 * 93.58603 * 26 24 2 28 28 C 1.51284 * 104.19752 * 24.79966 * 27 26 24 29 29 O 1.21275 * 124.93941 * 163.78055 * 28 27 26 30 30 N 1.34420 * 110.11211 * 343.74488 * 28 27 26 31 31 H 1.08999 * 109.47075 * 59.99977 * 1 2 3 32 32 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46923 * 299.99912 * 1 2 3 34 34 H 0.97008 * 120.00296 * 0.02562 * 6 4 2 35 35 H 1.09005 * 109.46767 * 304.99574 * 9 7 6 36 36 H 1.09002 * 109.47113 * 184.99915 * 9 7 6 37 37 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 38 38 H 1.07996 * 119.99667 * 359.97438 * 19 18 7 39 39 H 1.07995 * 119.99883 * 180.29829 * 20 19 18 40 40 H 1.07997 * 119.99993 * 179.77297 * 21 20 19 41 41 H 1.07996 * 120.00579 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.99980 * 0.02562 * 23 18 7 43 43 H 1.09000 * 110.96998 * 211.70590 * 26 24 2 44 44 H 1.08998 * 110.97001 * 335.47025 * 26 24 2 45 45 H 1.09007 * 110.48216 * 143.47773 * 27 26 24 46 46 H 1.08999 * 110.48527 * 266.11762 * 27 26 24 47 47 H 0.96998 * 124.34685 * 179.59488 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 1 3.1937 -1.3333 -3.4616 9 6 2.2462 0.0422 -4.8221 10 6 3.2678 1.1123 -4.5352 11 1 3.8248 1.0930 -3.6101 12 6 3.4913 2.1160 -5.4537 13 7 4.3832 3.0496 -5.2035 14 14 2.5274 2.1498 -7.0534 15 1 3.2604 1.3786 -8.0894 16 1 1.1896 1.5423 -6.8381 17 1 2.3660 3.5554 -7.5044 18 6 1.2642 -2.0770 -3.9892 19 6 -0.1023 -1.9133 -3.8602 20 6 -0.9559 -2.9538 -4.1756 21 6 -0.4425 -4.1616 -4.6096 22 6 0.9243 -4.3273 -4.7333 23 6 1.7777 -3.2848 -4.4232 24 6 2.0400 -0.7212 1.2492 25 1 3.1294 -0.7582 1.2444 26 6 1.5350 -0.0070 2.5225 27 6 0.2434 -0.7972 2.8359 28 6 0.4700 -2.1483 2.1941 29 8 -0.1706 -3.1489 2.4370 30 7 1.4843 -2.0780 1.3147 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.1493 0.5390 -2.5436 35 1 1.2665 0.5014 -4.9546 36 1 2.5237 -0.4906 -5.7317 37 1 4.5407 3.7555 -5.8499 38 1 -0.5032 -0.9712 -3.5164 39 1 -2.0238 -2.8243 -4.0794 40 1 -1.1092 -4.9758 -4.8526 41 1 1.3255 -5.2710 -5.0720 42 1 2.8456 -3.4143 -4.5195 43 1 2.2564 -0.1006 3.3343 44 1 1.3120 1.0404 2.3197 45 1 0.1132 -0.9036 3.9129 46 1 -0.6221 -0.3047 2.3928 47 1 1.8074 -2.8276 0.7908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599710846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:39 Heat of formation + Delta-G solvation = -58.173104 kcal Electronic energy + Delta-G solvation = -29048.629858 eV Core-core repulsion = 25195.535511 eV Total energy + Delta-G solvation = -3853.094347 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.99294 -39.59491 -38.52215 -36.77315 -35.29777 -33.06778 -32.49735 -31.35568 -30.87041 -30.53657 -29.32775 -27.66155 -25.33855 -23.93719 -22.38466 -21.82000 -21.53520 -20.59665 -19.96217 -19.58363 -17.33394 -17.25587 -16.91981 -16.44299 -16.34569 -15.46693 -15.40071 -14.95695 -14.56143 -14.36988 -14.24467 -13.79280 -13.72028 -13.42096 -13.16708 -13.12498 -12.96914 -12.77401 -12.66866 -12.44556 -12.36107 -12.11732 -11.81223 -11.52371 -11.40293 -11.29294 -11.12530 -11.00738 -10.77845 -10.69032 -10.22608 -9.91328 -9.89072 -9.45661 -9.37204 -9.06316 -8.69305 -8.65447 -8.56207 -8.33852 -6.17858 -4.17841 1.64257 1.67369 2.58324 3.00669 3.20890 3.29520 3.31572 3.42711 3.53543 4.09137 4.27138 4.32297 4.33339 4.48670 4.81249 4.85446 4.96962 5.10207 5.14670 5.15211 5.16602 5.24143 5.37052 5.38896 5.42482 5.52377 5.57361 5.67601 5.74209 5.77369 5.79672 5.86362 6.00209 6.04439 6.19067 6.27038 6.37521 6.68287 6.73007 6.73948 6.85272 6.88106 6.99313 7.12588 7.25755 7.28052 7.58419 7.99118 8.28470 8.36715 8.63816 8.87043 9.43220 10.94766 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.004317 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.167476 B = 6483.948250 C = 8354.343364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 H 0.113 0.887 4 C 0.521 3.479 5 O -0.551 6.551 6 N -0.697 5.697 7 C 0.195 3.805 8 H 0.092 0.908 9 C -0.014 4.014 10 C -0.521 4.521 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.875 3.125 15 H -0.276 1.276 16 H -0.265 1.265 17 H -0.287 1.287 18 C -0.077 4.077 19 C -0.109 4.109 20 C -0.124 4.124 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.108 4.108 24 C 0.150 3.850 25 H 0.098 0.902 26 C -0.128 4.128 27 C -0.162 4.162 28 C 0.516 3.484 29 O -0.546 6.546 30 N -0.710 5.710 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.023 0.977 36 H 0.029 0.971 37 H 0.264 0.736 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -5.315 10.480 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 H 0.130 0.870 4 C 0.306 3.694 5 O -0.430 6.430 6 N -0.345 5.345 7 C 0.090 3.910 8 H 0.110 0.890 9 C -0.052 4.052 10 C -0.559 4.559 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.190 1.190 17 H -0.213 1.213 18 C -0.078 4.078 19 C -0.127 4.127 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.126 4.126 24 C 0.044 3.956 25 H 0.116 0.884 26 C -0.166 4.166 27 C -0.202 4.202 28 C 0.302 3.698 29 O -0.423 6.423 30 N -0.365 5.365 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.236 0.764 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.125 0.875 47 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -9.053 -6.272 10.657 15.325 hybrid contribution -0.472 0.343 -1.436 1.549 sum -9.524 -5.929 9.222 14.523 Atomic orbital electron populations 1.21956 0.93020 1.02847 1.02939 1.21814 0.97975 1.01544 0.93515 0.86956 1.20309 0.79954 0.84469 0.84632 1.90626 1.38657 1.26842 1.86851 1.45880 1.52566 1.31028 1.05023 1.19951 0.95351 0.90039 0.85625 0.89018 1.19872 0.98157 0.94400 0.92729 1.20992 1.20937 1.07865 1.06113 0.90627 1.24977 0.94766 0.95275 0.97994 1.69899 1.33494 1.14026 1.36119 0.86868 0.81257 0.77311 0.84390 1.20188 1.19003 1.21317 1.20555 0.94619 0.95462 0.97160 1.20901 0.93017 0.98667 1.00112 1.21056 0.99248 0.93712 1.00235 1.21024 0.95316 0.97413 1.01294 1.21065 0.93581 0.98696 1.00653 1.21036 0.99911 0.92575 0.99096 1.21394 0.99403 0.81692 0.93121 0.88443 1.22676 0.96752 1.00250 0.96927 1.22523 1.00000 0.94725 1.02957 1.20892 0.79331 0.90167 0.79415 1.90739 1.50397 1.36085 1.65127 1.46311 1.35133 1.12312 1.42770 0.91638 0.92100 0.91067 0.76444 0.95900 0.95301 0.92590 0.86627 0.86692 0.86749 0.86506 0.86068 0.89601 0.88746 0.88365 0.87507 0.74190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 7.71 37.16 0.29 -1.13 16 2 C -0.13 -1.37 2.50 -91.77 -0.23 -1.60 16 3 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.52 8.01 6.98 -10.99 -0.08 7.93 16 5 O -0.55 -10.06 14.47 5.55 0.08 -9.98 16 6 N -0.70 -11.26 3.91 -54.93 -0.21 -11.48 16 7 C 0.19 3.64 2.12 -69.08 -0.15 3.49 16 8 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 9 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 10 C -0.52 -13.40 9.39 -34.44 -0.32 -13.72 16 11 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -25.95 13.96 55.43 0.77 -25.18 16 14 Si 0.87 20.34 27.47 -169.99 -4.67 15.67 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 C -0.08 -1.31 4.91 -104.62 -0.51 -1.83 16 19 C -0.11 -1.69 9.33 -39.58 -0.37 -2.06 16 20 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 21 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 22 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 23 C -0.11 -1.75 9.67 -39.58 -0.38 -2.13 16 24 C 0.15 1.53 2.96 -67.02 -0.20 1.33 16 25 H 0.10 1.05 8.07 -51.93 -0.42 0.63 16 26 C -0.13 -0.89 6.22 -25.10 -0.16 -1.05 16 27 C -0.16 -1.35 6.06 -26.74 -0.16 -1.51 16 28 C 0.52 6.66 7.32 -10.86 -0.08 6.58 16 29 O -0.55 -9.43 18.03 5.56 0.10 -9.33 16 30 N -0.71 -8.78 4.89 -52.77 -0.26 -9.04 16 31 H 0.06 0.59 7.56 -51.93 -0.39 0.19 16 32 H 0.06 0.70 6.90 -51.93 -0.36 0.34 16 33 H 0.07 0.50 5.28 -51.93 -0.27 0.23 16 34 H 0.40 5.92 8.02 -40.82 -0.33 5.59 16 35 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 36 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.12 1.65 7.71 -52.49 -0.40 1.24 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.12 1.88 8.04 -52.49 -0.42 1.46 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.49 7.69 -51.93 -0.40 0.09 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.11 0.76 6.07 -51.93 -0.32 0.45 16 47 H 0.42 5.90 8.01 -40.82 -0.33 5.58 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -33.07 378.27 -9.14 -42.22 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.92 Total: 12.13 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.74 Total: -10.71 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.30 Total: -45.70 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.18 Total: -19.31 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.07 -9.14 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599710846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.955 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds