Wall clock time and date at job start Tue Mar 31 2020 15:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46945 * 2 1 4 4 C 1.50704 * 109.46925 * 240.00424 * 2 1 3 5 5 O 1.21285 * 119.99472 * 239.99760 * 4 2 1 6 6 N 1.34769 * 120.00359 * 59.99615 * 4 2 1 7 7 C 1.46497 * 120.00374 * 180.02562 * 6 4 2 8 8 H 1.09006 * 109.46697 * 324.99901 * 7 6 4 9 9 C 1.53002 * 109.47570 * 205.00402 * 7 6 4 10 10 C 1.50696 * 109.46997 * 64.99224 * 9 7 6 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 9 7 12 12 C 1.37885 * 119.99717 * 180.02562 * 10 9 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.50699 * 109.47182 * 84.99852 * 7 6 4 19 19 C 1.38237 * 120.00050 * 39.73082 * 18 7 6 20 20 C 1.38231 * 119.99926 * 179.74489 * 19 18 7 21 21 C 1.38237 * 119.99926 * 0.52806 * 20 19 18 22 22 C 1.38231 * 120.00295 * 359.74575 * 21 20 19 23 23 C 1.38237 * 119.99957 * 220.00377 * 18 7 6 24 24 C 1.52995 * 109.47092 * 120.00099 * 2 1 3 25 25 H 1.09007 * 110.21416 * 178.07182 * 24 2 1 26 26 C 1.54482 * 110.24717 * 299.99688 * 24 2 1 27 27 C 1.54630 * 101.76101 * 93.58603 * 26 24 2 28 28 C 1.51284 * 104.19752 * 24.79966 * 27 26 24 29 29 O 1.21275 * 124.93941 * 163.78055 * 28 27 26 30 30 N 1.34420 * 110.11211 * 343.74488 * 28 27 26 31 31 H 1.08999 * 109.47075 * 59.99977 * 1 2 3 32 32 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46923 * 299.99912 * 1 2 3 34 34 H 0.97008 * 120.00296 * 0.02562 * 6 4 2 35 35 H 1.09005 * 109.46767 * 304.99574 * 9 7 6 36 36 H 1.09002 * 109.47113 * 184.99915 * 9 7 6 37 37 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 38 38 H 1.07996 * 119.99667 * 359.97438 * 19 18 7 39 39 H 1.07995 * 119.99883 * 180.29829 * 20 19 18 40 40 H 1.07997 * 119.99993 * 179.77297 * 21 20 19 41 41 H 1.07996 * 120.00579 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.99980 * 0.02562 * 23 18 7 43 43 H 1.09000 * 110.96998 * 211.70590 * 26 24 2 44 44 H 1.08998 * 110.97001 * 335.47025 * 26 24 2 45 45 H 1.09007 * 110.48216 * 143.47773 * 27 26 24 46 46 H 1.08999 * 110.48527 * 266.11762 * 27 26 24 47 47 H 0.96998 * 124.34685 * 179.59488 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 1 3.1937 -1.3333 -3.4616 9 6 2.2462 0.0422 -4.8221 10 6 3.2678 1.1123 -4.5352 11 1 3.8248 1.0930 -3.6101 12 6 3.4913 2.1160 -5.4537 13 7 4.3832 3.0496 -5.2035 14 14 2.5274 2.1498 -7.0534 15 1 3.2604 1.3786 -8.0894 16 1 1.1896 1.5423 -6.8381 17 1 2.3660 3.5554 -7.5044 18 6 1.2642 -2.0770 -3.9892 19 6 -0.1023 -1.9133 -3.8602 20 6 -0.9559 -2.9538 -4.1756 21 6 -0.4425 -4.1616 -4.6096 22 6 0.9243 -4.3273 -4.7333 23 6 1.7777 -3.2848 -4.4232 24 6 2.0400 -0.7212 1.2492 25 1 3.1294 -0.7582 1.2444 26 6 1.5350 -0.0070 2.5225 27 6 0.2434 -0.7972 2.8359 28 6 0.4700 -2.1483 2.1941 29 8 -0.1706 -3.1489 2.4370 30 7 1.4843 -2.0780 1.3147 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.1493 0.5390 -2.5436 35 1 1.2665 0.5014 -4.9546 36 1 2.5237 -0.4906 -5.7317 37 1 4.5407 3.7555 -5.8499 38 1 -0.5032 -0.9712 -3.5164 39 1 -2.0238 -2.8243 -4.0794 40 1 -1.1092 -4.9758 -4.8526 41 1 1.3255 -5.2710 -5.0720 42 1 2.8456 -3.4143 -4.5195 43 1 2.2564 -0.1006 3.3343 44 1 1.3120 1.0404 2.3197 45 1 0.1132 -0.9036 3.9129 46 1 -0.6221 -0.3047 2.3928 47 1 1.8074 -2.8276 0.7908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599710846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:38 Heat of formation + Delta-G solvation = -80.308504 kcal Electronic energy + Delta-G solvation = -29049.589721 eV Core-core repulsion = 25195.535511 eV Total energy + Delta-G solvation = -3854.054210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.97014 -40.80411 -39.69738 -37.85043 -36.74538 -34.72733 -33.86059 -32.26226 -31.93157 -31.68271 -30.97214 -28.46581 -26.88223 -24.92854 -23.61845 -23.30339 -22.50812 -21.54130 -21.26235 -20.70758 -19.06023 -18.22134 -18.20157 -17.66191 -17.44005 -16.67827 -16.49379 -16.30617 -16.03534 -15.57250 -15.42018 -14.97514 -14.83428 -14.64767 -14.42512 -14.23644 -14.20278 -14.08494 -13.85983 -13.57881 -13.44207 -13.07540 -12.99959 -12.85328 -12.54777 -12.42663 -12.39524 -12.05706 -11.96117 -11.76728 -11.73441 -11.72081 -11.40915 -10.93438 -10.79182 -10.61742 -10.07240 -9.96490 -9.79332 -9.56538 -8.27400 -6.31395 0.46359 0.51912 1.36788 1.39398 1.48855 1.60730 1.79026 2.34460 2.35793 2.49046 2.92717 3.08663 3.44504 3.59003 3.70332 3.88459 3.99090 4.01077 4.11035 4.16347 4.17406 4.28411 4.36170 4.37136 4.56752 4.57503 4.68796 4.71265 4.73849 4.84037 4.90241 4.98321 5.01826 5.12642 5.14856 5.15396 5.17464 5.26675 5.33492 5.53594 5.56606 5.60991 5.63888 5.83725 5.88155 6.13907 6.16331 6.26861 6.71163 6.76716 7.25759 7.32602 7.40171 8.88466 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.004317 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.167476 B = 6483.948250 C = 8354.343364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 H 0.135 0.865 4 C 0.511 3.489 5 O -0.587 6.587 6 N -0.696 5.696 7 C 0.206 3.794 8 H 0.055 0.945 9 C -0.005 4.005 10 C -0.516 4.516 11 H 0.037 0.963 12 C 0.016 3.984 13 N -0.945 5.945 14 Si 0.939 3.061 15 H -0.276 1.276 16 H -0.244 1.244 17 H -0.285 1.285 18 C -0.097 4.097 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.131 4.131 24 C 0.144 3.856 25 H 0.087 0.913 26 C -0.113 4.113 27 C -0.152 4.152 28 C 0.506 3.494 29 O -0.599 6.599 30 N -0.714 5.714 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.408 0.592 35 H 0.036 0.964 36 H 0.024 0.976 37 H 0.265 0.735 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.115 0.885 46 H 0.126 0.874 47 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.202 -4.749 10.726 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 H 0.152 0.848 4 C 0.299 3.701 5 O -0.467 6.467 6 N -0.345 5.345 7 C 0.101 3.899 8 H 0.074 0.926 9 C -0.043 4.043 10 C -0.554 4.554 11 H 0.055 0.945 12 C -0.182 4.182 13 N -0.585 5.585 14 Si 0.763 3.237 15 H -0.202 1.202 16 H -0.167 1.167 17 H -0.211 1.211 18 C -0.099 4.099 19 C -0.136 4.136 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.142 4.142 23 C -0.150 4.150 24 C 0.039 3.961 25 H 0.105 0.895 26 C -0.151 4.151 27 C -0.191 4.191 28 C 0.295 3.705 29 O -0.481 6.481 30 N -0.366 5.366 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.244 0.756 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.144 0.856 45 H 0.133 0.867 46 H 0.144 0.856 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -11.983 -5.675 10.914 17.173 hybrid contribution 0.532 0.074 -1.492 1.586 sum -11.451 -5.601 9.422 15.852 Atomic orbital electron populations 1.21967 0.91386 1.01970 1.04950 1.21879 0.99140 1.01862 0.91036 0.84760 1.21235 0.79134 0.84191 0.85539 1.90608 1.40199 1.28580 1.87361 1.45843 1.52658 1.31227 1.04798 1.19492 0.94583 0.90213 0.85640 0.92637 1.19727 0.97108 0.93690 0.93742 1.21163 1.21025 1.08753 1.04463 0.94504 1.25808 0.95820 0.94912 1.01634 1.70044 1.35659 1.15158 1.37647 0.85830 0.80673 0.77405 0.79747 1.20177 1.16744 1.21057 1.20415 0.95179 0.95173 0.99101 1.21075 0.92381 0.99854 1.00300 1.21437 1.00573 0.93253 0.99083 1.21458 0.95357 0.98185 0.99763 1.21371 0.93998 0.98924 0.99947 1.21177 1.00131 0.93416 1.00267 1.21592 0.98934 0.80959 0.94660 0.89523 1.22747 0.96059 1.01155 0.95132 1.22568 1.01293 0.91655 1.03599 1.21742 0.78429 0.91319 0.79021 1.90699 1.52189 1.38432 1.66809 1.46512 1.35059 1.12838 1.42180 0.90995 0.94342 0.87733 0.75574 0.94607 0.95809 0.92552 0.85654 0.83808 0.83529 0.84154 0.86915 0.88159 0.85604 0.86712 0.85609 0.75947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 7.71 71.98 0.56 -1.84 16 2 C -0.12 -2.39 2.50 -11.54 -0.03 -2.42 16 3 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.51 16.11 6.98 87.66 0.61 16.72 16 5 O -0.59 -22.68 14.47 -3.05 -0.04 -22.73 16 6 N -0.70 -22.98 3.91 -446.09 -1.75 -24.73 16 7 C 0.21 8.00 2.12 44.25 0.09 8.09 16 8 H 0.06 2.52 7.44 -2.38 -0.02 2.50 16 9 C 0.00 -0.22 3.56 29.85 0.11 -0.11 16 10 C -0.52 -27.33 9.39 25.60 0.24 -27.09 16 11 H 0.04 2.19 7.99 -2.91 -0.02 2.16 16 12 C 0.02 0.87 5.47 84.66 0.46 1.33 16 13 N -0.94 -56.04 13.96 21.45 0.30 -55.75 16 14 Si 0.94 41.73 27.47 68.60 1.88 43.62 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 C -0.10 -3.37 4.91 -19.87 -0.10 -3.47 16 19 C -0.12 -3.51 9.33 22.27 0.21 -3.30 16 20 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 21 C -0.13 -3.15 10.05 22.27 0.22 -2.92 16 22 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 23 C -0.13 -4.34 9.67 22.27 0.22 -4.13 16 24 C 0.14 2.77 2.96 45.44 0.13 2.91 16 25 H 0.09 1.86 8.07 -2.38 -0.02 1.84 16 26 C -0.11 -1.18 6.22 31.65 0.20 -0.98 16 27 C -0.15 -2.06 6.06 30.59 0.19 -1.88 16 28 C 0.51 12.83 7.32 87.90 0.64 13.48 16 29 O -0.60 -21.12 18.03 -3.02 -0.05 -21.17 16 30 N -0.71 -17.87 4.89 -439.45 -2.15 -20.02 16 31 H 0.07 1.10 7.56 -2.39 -0.02 1.09 16 32 H 0.04 0.82 6.90 -2.39 -0.02 0.81 16 33 H 0.10 1.02 5.28 -2.39 -0.01 1.01 16 34 H 0.41 11.94 8.02 -92.70 -0.74 11.19 16 35 H 0.04 1.47 7.20 -2.38 -0.02 1.45 16 36 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 37 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.13 3.36 7.71 -2.91 -0.02 3.34 16 39 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 41 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.11 3.75 8.04 -2.91 -0.02 3.73 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.13 0.61 7.69 -2.39 -0.02 0.60 16 45 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.13 1.27 6.07 -2.39 -0.01 1.25 16 47 H 0.40 12.13 8.01 -92.71 -0.74 11.39 16 Total: -1.00 -76.87 378.27 1.85 -75.03 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.54 Total: 37.45 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.20 Total: -11.70 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -3.60 Total: -100.49 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -0.10 Total: -43.90 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.88 Total: 43.62 kcal Total: -76.87 1.85 -75.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599710846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.283 kcal (2) G-P(sol) polarization free energy of solvation -76.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds