Wall clock time and date at job start Tue Mar 31 2020 16:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46955 * 2 1 4 4 C 1.52995 * 109.47280 * 120.00216 * 2 1 3 5 5 N 1.46494 * 109.47394 * 175.00014 * 4 2 1 6 6 C 1.34776 * 120.00009 * 179.97438 * 5 4 2 7 7 O 1.21609 * 120.00181 * 0.02562 * 6 5 4 8 8 C 1.47435 * 119.99851 * 180.02562 * 6 5 4 9 9 C 1.39230 * 120.28430 * 356.62332 * 8 6 5 10 10 C 1.38223 * 120.09259 * 180.28253 * 9 8 6 11 11 C 1.38829 * 120.67526 * 359.69423 * 10 9 8 12 12 C 1.37593 * 120.56736 * 0.02562 * 11 10 9 13 13 C 1.40702 * 119.88565 * 0.02562 * 12 11 10 14 14 C 1.40894 * 120.32754 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00110 * 145.78178 * 14 13 12 16 16 C 1.40275 * 119.99958 * 325.78478 * 14 13 12 17 17 N 1.30627 * 119.99807 * 340.71491 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 160.71033 * 16 14 13 19 19 H 1.48504 * 109.47052 * 179.97438 * 18 16 14 20 20 H 1.48492 * 109.47128 * 300.00084 * 18 16 14 21 21 H 1.48502 * 109.46787 * 60.00433 * 18 16 14 22 22 N 1.46503 * 109.46734 * 240.00179 * 2 1 3 23 23 C 1.45754 * 117.94659 * 119.73965 * 22 2 1 24 24 C 1.53096 * 110.38760 * 160.73889 * 23 22 2 25 25 C 1.53344 * 108.52922 * 51.11527 * 24 23 22 26 26 C 1.53070 * 108.42548 * 292.30869 * 25 24 23 27 27 C 1.33351 * 117.94896 * 299.99334 * 22 2 1 28 28 O 1.21287 * 118.24418 * 2.25207 * 27 22 2 29 29 H 1.08997 * 109.47488 * 60.00034 * 1 2 3 30 30 H 1.09000 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47418 * 299.99874 * 1 2 3 32 32 H 1.09004 * 109.47250 * 54.99872 * 4 2 1 33 33 H 1.09005 * 109.47069 * 295.00048 * 4 2 1 34 34 H 0.96994 * 119.99831 * 359.97438 * 5 4 2 35 35 H 1.08005 * 119.95260 * 359.97438 * 9 8 6 36 36 H 1.07998 * 119.65862 * 179.72219 * 10 9 8 37 37 H 1.08002 * 119.71180 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.05193 * 180.02562 * 12 11 10 39 39 H 0.97003 * 120.00432 * 354.83849 * 17 16 14 40 40 H 1.08996 * 109.30015 * 281.23580 * 23 22 2 41 41 H 1.09012 * 109.29808 * 40.60790 * 23 22 2 42 42 H 1.09005 * 109.81005 * 291.32451 * 24 23 22 43 43 H 1.09000 * 109.54409 * 170.75066 * 24 23 22 44 44 H 1.09000 * 109.67688 * 172.57569 * 25 24 23 45 45 H 1.08998 * 109.67674 * 52.04083 * 25 24 23 46 46 H 1.08999 * 109.40010 * 288.77634 * 26 25 24 47 47 H 1.08995 * 109.33323 * 168.98423 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4283 2.1911 7 8 3.5683 -1.8846 3.1424 8 6 5.6425 -1.5336 2.1323 9 6 6.3350 -1.0764 1.0143 10 6 7.7121 -1.1824 0.9609 11 6 8.4213 -1.7372 2.0176 12 6 7.7653 -2.1925 3.1382 13 6 6.3637 -2.0972 3.2172 14 6 5.6824 -2.5610 4.3600 15 1 4.7923 -2.0534 4.7011 16 6 6.1604 -3.6820 5.0547 17 7 6.9798 -4.5132 4.4683 18 14 5.6251 -3.9860 6.8183 19 1 6.2652 -5.2273 7.3230 20 1 6.0355 -2.8373 7.6651 21 1 4.1485 -4.1355 6.8686 22 7 2.0183 -0.6906 -1.1962 23 6 2.8481 0.0620 -2.1286 24 6 3.6412 -0.8915 -3.0262 25 6 2.6684 -1.9061 -3.6390 26 6 2.1401 -2.8068 -2.5198 27 6 1.6714 -1.9669 -1.3664 28 8 0.9376 -2.4765 -0.5461 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1583 2.1370 34 1 3.9823 -0.4628 0.4316 35 1 5.7949 -0.6429 0.1855 36 1 8.2418 -0.8296 0.0884 37 1 9.4971 -1.8120 1.9596 38 1 8.3253 -2.6222 3.9556 39 1 7.1992 -4.3977 3.5305 40 1 2.2121 0.6974 -2.7449 41 1 3.5427 0.6881 -1.5682 42 1 4.3925 -1.4158 -2.4355 43 1 4.1272 -0.3249 -3.8205 44 1 3.1886 -2.5108 -4.3819 45 1 1.8378 -1.3802 -4.1097 46 1 2.9360 -3.4713 -2.1837 47 1 1.3077 -3.4007 -2.8971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601518998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:11 Heat of formation + Delta-G solvation = -60.135397 kcal Electronic energy + Delta-G solvation = -29277.707287 eV Core-core repulsion = 25424.527849 eV Total energy + Delta-G solvation = -3853.179438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.89579 -38.87505 -37.03728 -36.55469 -35.66891 -34.02577 -33.00273 -31.06067 -29.93995 -29.63041 -29.31703 -26.21594 -24.97557 -24.61332 -23.38389 -22.19392 -21.25929 -20.80962 -19.39183 -18.53139 -18.07563 -17.06861 -16.69889 -16.00296 -15.69832 -15.00675 -14.79179 -14.68084 -14.46202 -14.14184 -14.06324 -13.99142 -13.75691 -13.51964 -13.42523 -13.00297 -12.64835 -12.50173 -12.27564 -12.13869 -11.90496 -11.75269 -11.67563 -11.52429 -11.22840 -11.16288 -11.08679 -10.89200 -10.88375 -10.73379 -10.33958 -10.15278 -9.59931 -9.43822 -9.05297 -8.79143 -8.45380 -8.25646 -7.78062 -7.59377 -7.12497 -4.44030 2.26384 2.66693 2.74367 2.85193 3.22887 3.33433 3.43634 3.97451 4.07041 4.12255 4.39058 4.44588 4.47897 4.57944 4.67004 4.88306 5.02793 5.11794 5.17632 5.21868 5.27957 5.46744 5.48101 5.55390 5.63403 5.65306 5.67046 5.76913 5.82129 5.85985 5.93878 6.02441 6.13866 6.22058 6.30864 6.52106 6.58560 6.71948 6.99701 7.17630 7.28810 7.43699 7.49583 7.62748 7.72208 7.90479 8.11118 8.20177 8.23335 8.42587 8.75212 8.88233 9.43064 10.06197 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.003872 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.081508 B = 7229.324885 C = 8223.202605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.133 3.867 3 H 0.088 0.912 4 C 0.107 3.893 5 N -0.744 5.744 6 C 0.562 3.438 7 O -0.535 6.535 8 C -0.264 4.264 9 C -0.043 4.043 10 C -0.261 4.261 11 C -0.076 4.076 12 C -0.201 4.201 13 C 0.120 3.880 14 C -0.465 4.465 15 H 0.105 0.895 16 C 0.031 3.969 17 N -0.793 5.793 18 Si 1.070 2.930 19 H -0.274 1.274 20 H -0.274 1.274 21 H -0.272 1.272 22 N -0.601 5.601 23 C 0.112 3.888 24 C -0.139 4.139 25 C -0.121 4.121 26 C -0.137 4.137 27 C 0.520 3.480 28 O -0.540 6.540 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.386 0.614 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.298 0.702 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 8.611 -15.352 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.030 3.970 3 H 0.106 0.894 4 C -0.018 4.018 5 N -0.399 5.399 6 C 0.356 3.644 7 O -0.414 6.414 8 C -0.268 4.268 9 C -0.062 4.062 10 C -0.280 4.280 11 C -0.095 4.095 12 C -0.220 4.220 13 C 0.116 3.884 14 C -0.492 4.492 15 H 0.123 0.877 16 C -0.190 4.190 17 N -0.416 5.416 18 Si 0.893 3.107 19 H -0.199 1.199 20 H -0.200 1.200 21 H -0.197 1.197 22 N -0.335 5.335 23 C -0.011 4.011 24 C -0.177 4.177 25 C -0.159 4.159 26 C -0.177 4.177 27 C 0.309 3.691 28 O -0.418 6.418 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.220 0.780 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.118 0.882 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.415 6.933 -12.957 16.460 hybrid contribution 0.271 1.373 -2.042 2.475 sum -7.145 8.306 -14.999 18.575 Atomic orbital electron populations 1.22151 0.93851 1.04849 1.01628 1.21377 0.95484 0.95806 0.84380 0.89427 1.21630 0.81709 1.02707 0.95721 1.45893 1.06221 1.63053 1.24747 1.18359 0.87840 0.76964 0.81277 1.90682 1.70194 1.47444 1.33040 1.19419 0.90682 1.19310 0.97431 1.20654 0.94129 0.96250 0.95181 1.20206 0.93731 1.13738 1.00351 1.20724 0.97600 0.97162 0.94023 1.21245 0.94300 1.07808 0.98615 1.17497 0.91015 0.89361 0.90560 1.21188 1.10929 1.10756 1.06309 0.87719 1.27271 0.92276 0.92754 1.06719 1.70388 1.23234 1.32658 1.15350 0.83564 0.77432 0.77197 0.72482 1.19928 1.19952 1.19748 1.47399 1.51321 1.11464 1.23324 1.21497 0.93543 0.94298 0.91778 1.21945 0.98365 0.97865 0.99505 1.21636 0.99253 0.97531 0.97470 1.21691 1.03391 0.98481 0.94099 1.20058 0.80302 0.81528 0.87225 1.90664 1.36582 1.70404 1.44156 0.92746 0.89447 0.91616 0.89512 0.91678 0.78034 0.89549 0.89007 0.88933 0.87566 0.88857 0.91688 0.90704 0.90377 0.89724 0.90593 0.91311 0.88164 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.08 37.16 0.34 -1.56 16 2 C 0.13 1.61 2.76 -67.93 -0.19 1.43 16 3 H 0.09 0.88 7.79 -51.93 -0.40 0.47 16 4 C 0.11 1.80 4.86 -4.05 -0.02 1.78 16 5 N -0.74 -13.82 5.34 -61.38 -0.33 -14.14 16 6 C 0.56 13.56 7.73 -12.52 -0.10 13.47 16 7 O -0.54 -14.91 13.56 5.27 0.07 -14.83 16 8 C -0.26 -6.52 5.92 -104.37 -0.62 -7.13 16 9 C -0.04 -0.91 9.53 -39.22 -0.37 -1.28 16 10 C -0.26 -5.41 10.03 -39.37 -0.39 -5.80 16 11 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 12 C -0.20 -5.04 7.87 -38.89 -0.31 -5.34 16 13 C 0.12 3.25 5.17 -106.54 -0.55 2.70 16 14 C -0.47 -13.09 7.65 -37.81 -0.29 -13.37 16 15 H 0.11 3.09 5.93 -52.48 -0.31 2.78 16 16 C 0.03 0.84 5.04 -17.30 -0.09 0.75 16 17 N -0.79 -21.64 12.57 55.56 0.70 -20.94 16 18 Si 1.07 23.12 29.98 -169.99 -5.10 18.03 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 N -0.60 -6.81 2.24 -167.26 -0.37 -7.18 16 23 C 0.11 0.88 6.07 -4.39 -0.03 0.86 16 24 C -0.14 -1.00 6.03 -26.50 -0.16 -1.16 16 25 C -0.12 -0.87 6.03 -26.52 -0.16 -1.03 16 26 C -0.14 -1.41 6.03 -28.10 -0.17 -1.58 16 27 C 0.52 7.06 6.88 -11.87 -0.08 6.98 16 28 O -0.54 -9.49 12.52 5.55 0.07 -9.42 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.23 5.84 -51.93 -0.30 0.93 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.76 6.14 -51.93 -0.32 1.44 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.39 6.14 5.81 -40.82 -0.24 5.90 16 35 H 0.09 1.49 6.41 -52.48 -0.34 1.15 16 36 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.11 2.72 6.94 -52.48 -0.36 2.36 16 39 H 0.30 8.31 6.56 -40.82 -0.27 8.04 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.55 7.84 -51.92 -0.41 0.14 16 42 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -33.20 370.97 -9.77 -42.97 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -6.82 Total: 12.33 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -3.58 Total: -12.38 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.00 Total: -42.27 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.14 Total: -24.26 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.10 Total: 18.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.20 -9.77 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601518998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.166 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds