Wall clock time and date at job start Tue Mar 31 2020 16:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46955 * 2 1 4 4 C 1.52995 * 109.47280 * 120.00216 * 2 1 3 5 5 N 1.46494 * 109.47394 * 175.00014 * 4 2 1 6 6 C 1.34776 * 120.00009 * 179.97438 * 5 4 2 7 7 O 1.21609 * 120.00181 * 0.02562 * 6 5 4 8 8 C 1.47435 * 119.99851 * 180.02562 * 6 5 4 9 9 C 1.39230 * 120.28430 * 356.62332 * 8 6 5 10 10 C 1.38223 * 120.09259 * 180.28253 * 9 8 6 11 11 C 1.38829 * 120.67526 * 359.69423 * 10 9 8 12 12 C 1.37593 * 120.56736 * 0.02562 * 11 10 9 13 13 C 1.40702 * 119.88565 * 0.02562 * 12 11 10 14 14 C 1.40894 * 120.32754 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00110 * 145.78178 * 14 13 12 16 16 C 1.40275 * 119.99958 * 325.78478 * 14 13 12 17 17 N 1.30627 * 119.99807 * 340.71491 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 160.71033 * 16 14 13 19 19 H 1.48504 * 109.47052 * 179.97438 * 18 16 14 20 20 H 1.48492 * 109.47128 * 300.00084 * 18 16 14 21 21 H 1.48502 * 109.46787 * 60.00433 * 18 16 14 22 22 N 1.46503 * 109.46734 * 240.00179 * 2 1 3 23 23 C 1.45754 * 117.94659 * 119.73965 * 22 2 1 24 24 C 1.53096 * 110.38760 * 160.73889 * 23 22 2 25 25 C 1.53344 * 108.52922 * 51.11527 * 24 23 22 26 26 C 1.53070 * 108.42548 * 292.30869 * 25 24 23 27 27 C 1.33351 * 117.94896 * 299.99334 * 22 2 1 28 28 O 1.21287 * 118.24418 * 2.25207 * 27 22 2 29 29 H 1.08997 * 109.47488 * 60.00034 * 1 2 3 30 30 H 1.09000 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47418 * 299.99874 * 1 2 3 32 32 H 1.09004 * 109.47250 * 54.99872 * 4 2 1 33 33 H 1.09005 * 109.47069 * 295.00048 * 4 2 1 34 34 H 0.96994 * 119.99831 * 359.97438 * 5 4 2 35 35 H 1.08005 * 119.95260 * 359.97438 * 9 8 6 36 36 H 1.07998 * 119.65862 * 179.72219 * 10 9 8 37 37 H 1.08002 * 119.71180 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.05193 * 180.02562 * 12 11 10 39 39 H 0.97003 * 120.00432 * 354.83849 * 17 16 14 40 40 H 1.08996 * 109.30015 * 281.23580 * 23 22 2 41 41 H 1.09012 * 109.29808 * 40.60790 * 23 22 2 42 42 H 1.09005 * 109.81005 * 291.32451 * 24 23 22 43 43 H 1.09000 * 109.54409 * 170.75066 * 24 23 22 44 44 H 1.09000 * 109.67688 * 172.57569 * 25 24 23 45 45 H 1.08998 * 109.67674 * 52.04083 * 25 24 23 46 46 H 1.08999 * 109.40010 * 288.77634 * 26 25 24 47 47 H 1.08995 * 109.33323 * 168.98423 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4283 2.1911 7 8 3.5683 -1.8846 3.1424 8 6 5.6425 -1.5336 2.1323 9 6 6.3350 -1.0764 1.0143 10 6 7.7121 -1.1824 0.9609 11 6 8.4213 -1.7372 2.0176 12 6 7.7653 -2.1925 3.1382 13 6 6.3637 -2.0972 3.2172 14 6 5.6824 -2.5610 4.3600 15 1 4.7923 -2.0534 4.7011 16 6 6.1604 -3.6820 5.0547 17 7 6.9798 -4.5132 4.4683 18 14 5.6251 -3.9860 6.8183 19 1 6.2652 -5.2273 7.3230 20 1 6.0355 -2.8373 7.6651 21 1 4.1485 -4.1355 6.8686 22 7 2.0183 -0.6906 -1.1962 23 6 2.8481 0.0620 -2.1286 24 6 3.6412 -0.8915 -3.0262 25 6 2.6684 -1.9061 -3.6390 26 6 2.1401 -2.8068 -2.5198 27 6 1.6714 -1.9669 -1.3664 28 8 0.9376 -2.4765 -0.5461 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1583 2.1370 34 1 3.9823 -0.4628 0.4316 35 1 5.7949 -0.6429 0.1855 36 1 8.2418 -0.8296 0.0884 37 1 9.4971 -1.8120 1.9596 38 1 8.3253 -2.6222 3.9556 39 1 7.1992 -4.3977 3.5305 40 1 2.2121 0.6974 -2.7449 41 1 3.5427 0.6881 -1.5682 42 1 4.3925 -1.4158 -2.4355 43 1 4.1272 -0.3249 -3.8205 44 1 3.1886 -2.5108 -4.3819 45 1 1.8378 -1.3802 -4.1097 46 1 2.9360 -3.4713 -2.1837 47 1 1.3077 -3.4007 -2.8971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601518998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:10 Heat of formation + Delta-G solvation = -81.157959 kcal Electronic energy + Delta-G solvation = -29278.618893 eV Core-core repulsion = 25424.527849 eV Total energy + Delta-G solvation = -3854.091045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.90989 -40.68400 -38.82842 -37.51927 -36.85316 -35.88402 -34.51841 -32.23095 -31.58557 -31.11908 -30.43573 -27.75826 -26.70576 -25.35307 -24.36722 -23.89213 -22.78882 -22.08133 -21.17528 -20.00411 -19.35372 -18.29782 -17.96170 -17.32495 -16.71263 -16.63380 -16.36635 -16.13620 -15.81695 -15.63774 -15.45818 -15.13753 -15.05822 -14.79303 -14.45629 -14.25541 -14.15386 -13.92537 -13.87068 -13.45575 -13.17028 -13.00488 -12.88568 -12.71763 -12.58741 -12.52884 -12.50150 -12.04352 -11.96972 -11.84791 -11.78367 -11.72992 -11.48013 -10.98534 -10.51070 -10.39341 -9.97767 -9.70582 -9.61187 -9.50706 -9.12323 -6.48197 0.38685 0.89476 1.43226 1.59202 1.64556 1.73698 1.95535 2.24327 2.28588 2.41363 2.72218 3.51398 3.55303 3.77752 3.86064 3.92593 3.94238 4.09482 4.17950 4.22297 4.26840 4.43437 4.46895 4.50835 4.59216 4.62676 4.73131 4.74342 4.85791 4.87001 4.90209 4.94209 4.96223 5.10102 5.12149 5.15000 5.27740 5.37831 5.41156 5.52390 5.61054 5.63867 5.69850 5.87765 5.95000 6.18814 6.32753 6.51579 6.66785 6.83536 6.90735 7.21705 7.59213 8.02048 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.003872 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.081508 B = 7229.324885 C = 8223.202605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.124 0.876 4 C 0.108 3.892 5 N -0.718 5.718 6 C 0.553 3.447 7 O -0.584 6.584 8 C -0.283 4.283 9 C -0.039 4.039 10 C -0.239 4.239 11 C -0.071 4.071 12 C -0.225 4.225 13 C 0.096 3.904 14 C -0.513 4.513 15 H 0.077 0.923 16 C -0.003 4.003 17 N -0.817 5.817 18 Si 1.114 2.886 19 H -0.262 1.262 20 H -0.256 1.256 21 H -0.276 1.276 22 N -0.596 5.596 23 C 0.101 3.899 24 C -0.137 4.137 25 C -0.113 4.113 26 C -0.137 4.137 27 C 0.507 3.493 28 O -0.593 6.593 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.403 0.597 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.282 0.718 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 11.519 -19.151 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.142 0.858 4 C -0.017 4.017 5 N -0.372 5.372 6 C 0.346 3.654 7 O -0.466 6.466 8 C -0.288 4.288 9 C -0.058 4.058 10 C -0.258 4.258 11 C -0.090 4.090 12 C -0.244 4.244 13 C 0.092 3.908 14 C -0.541 4.541 15 H 0.095 0.905 16 C -0.218 4.218 17 N -0.441 5.441 18 Si 0.932 3.068 19 H -0.186 1.186 20 H -0.181 1.181 21 H -0.202 1.202 22 N -0.329 5.329 23 C -0.020 4.020 24 C -0.175 4.175 25 C -0.151 4.151 26 C -0.176 4.176 27 C 0.297 3.703 28 O -0.474 6.474 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.239 0.761 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.133 0.867 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.173 9.906 -16.842 20.491 hybrid contribution -0.091 0.629 -1.145 1.309 sum -6.265 10.535 -17.987 21.766 Atomic orbital electron populations 1.22075 0.93258 1.03259 1.03251 1.21356 0.95930 0.96579 0.82481 0.85777 1.21681 0.80183 1.01238 0.98559 1.45580 1.06982 1.61084 1.23597 1.18564 0.88148 0.76958 0.81720 1.90663 1.71044 1.49621 1.35249 1.19795 0.91333 1.19339 0.98342 1.21081 0.94794 0.95029 0.94862 1.20822 0.93637 1.10474 1.00820 1.21177 0.99538 0.95256 0.92997 1.21201 0.93654 1.09629 0.99928 1.17891 0.92227 0.89615 0.91084 1.21096 1.11315 1.12714 1.09017 0.90539 1.28444 0.91721 0.91938 1.09679 1.70500 1.25729 1.33377 1.14475 0.83048 0.76787 0.78136 0.68868 1.18577 1.18063 1.20180 1.47524 1.51041 1.10981 1.23325 1.21885 0.93945 0.94456 0.91716 1.21980 0.97788 0.97763 0.99941 1.21635 0.99840 0.97253 0.96331 1.21716 1.03132 0.98586 0.94197 1.20726 0.79734 0.82404 0.87452 1.90662 1.38991 1.71689 1.46088 0.90275 0.92650 0.90763 0.93481 0.92309 0.76061 0.84953 0.84064 0.85567 0.89324 0.90585 0.88921 0.89294 0.92093 0.86680 0.89007 0.89976 0.89397 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.08 71.98 0.65 -2.81 16 2 C 0.14 3.13 2.76 44.99 0.12 3.26 16 3 H 0.12 1.94 7.79 -2.39 -0.02 1.92 16 4 C 0.11 3.69 4.86 86.38 0.42 4.11 16 5 N -0.72 -26.28 5.34 -466.37 -2.49 -28.77 16 6 C 0.55 27.45 7.73 86.67 0.67 28.12 16 7 O -0.58 -34.71 13.56 -4.06 -0.06 -34.77 16 8 C -0.28 -14.06 5.92 -19.70 -0.12 -14.18 16 9 C -0.04 -1.51 9.53 22.50 0.21 -1.29 16 10 C -0.24 -8.72 10.03 22.41 0.22 -8.49 16 11 C -0.07 -2.95 10.01 22.26 0.22 -2.73 16 12 C -0.22 -11.48 7.87 22.72 0.18 -11.30 16 13 C 0.10 5.38 5.17 -21.11 -0.11 5.27 16 14 C -0.51 -30.91 7.65 23.42 0.18 -30.73 16 15 H 0.08 4.92 5.93 -2.91 -0.02 4.90 16 16 C 0.00 -0.15 5.04 85.37 0.43 0.28 16 17 N -0.82 -47.07 12.57 21.88 0.28 -46.80 16 18 Si 1.11 49.27 29.98 68.60 2.06 51.33 16 19 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 N -0.60 -12.05 2.24 -802.27 -1.80 -13.85 16 23 C 0.10 1.10 6.07 86.55 0.53 1.63 16 24 C -0.14 -1.33 6.03 30.74 0.19 -1.14 16 25 C -0.11 -1.22 6.03 30.73 0.19 -1.04 16 26 C -0.14 -2.67 6.03 29.71 0.18 -2.49 16 27 C 0.51 13.54 6.88 87.71 0.60 14.14 16 28 O -0.59 -21.88 12.52 -3.05 -0.04 -21.92 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.61 5.84 -2.39 -0.01 1.59 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 2.04 6.14 -2.38 -0.01 2.02 16 33 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.40 11.65 5.81 -92.71 -0.54 11.11 16 35 H 0.13 3.82 6.41 -2.91 -0.02 3.80 16 36 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 37 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.09 4.75 6.94 -2.91 -0.02 4.73 16 39 H 0.28 16.69 6.56 -92.71 -0.61 16.09 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.09 0.77 7.84 -2.38 -0.02 0.75 16 42 H 0.06 0.83 8.12 -2.38 -0.02 0.81 16 43 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.71 8.12 -2.39 -0.02 0.70 16 46 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -81.96 370.97 3.33 -78.63 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.61 Total: 35.54 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.77 Total: -19.40 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -4.01 Total: -89.41 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -0.09 Total: -56.69 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.06 Total: 51.33 kcal Total: -81.96 3.33 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601518998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.529 kcal (2) G-P(sol) polarization free energy of solvation -81.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds