Wall clock time and date at job start Tue Mar 31 2020 17:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47098 * 2 1 4 4 C 1.37097 * 120.00276 * 293.94196 * 3 2 1 5 5 H 1.08000 * 119.99986 * 171.42614 * 4 3 2 6 6 C 1.38951 * 119.99733 * 351.43531 * 4 3 2 7 7 N 1.31406 * 120.00237 * 358.22877 * 6 4 3 8 8 Si 1.86798 * 119.99586 * 178.22946 * 6 4 3 9 9 H 1.48494 * 109.47618 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47113 * 120.00283 * 8 6 4 11 11 H 1.48501 * 109.47161 * 239.99474 * 8 6 4 12 12 C 1.34781 * 120.00177 * 113.94152 * 3 2 1 13 13 O 1.21288 * 120.00506 * 176.95520 * 12 3 2 14 14 C 1.50703 * 119.99447 * 356.95473 * 12 3 2 15 15 C 1.52997 * 110.43567 * 68.04797 * 14 12 3 16 16 C 1.50701 * 109.47316 * 61.19568 * 15 14 12 17 17 C 1.38228 * 120.00230 * 97.03244 * 16 15 14 18 18 C 1.38231 * 120.00293 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.99991 * 359.97119 * 18 17 16 20 20 C 1.38238 * 119.99577 * 0.02562 * 19 18 17 21 21 C 1.38230 * 120.00492 * 0.06984 * 20 19 18 22 22 C 1.54628 * 110.48906 * 305.50033 * 14 12 3 23 23 C 1.54684 * 101.67107 * 265.90714 * 22 14 12 24 24 N 1.46761 * 105.53514 * 334.74026 * 23 22 14 25 25 C 1.46504 * 124.35117 * 196.89988 * 24 23 22 26 26 C 1.34418 * 111.30177 * 16.92424 * 24 23 22 27 27 O 1.21282 * 124.94403 * 179.55623 * 26 24 23 28 28 H 1.08994 * 109.47376 * 305.88413 * 1 2 3 29 29 H 1.08996 * 109.47333 * 65.88597 * 1 2 3 30 30 H 1.09000 * 109.46915 * 185.88916 * 1 2 3 31 31 H 1.09006 * 109.47009 * 240.00379 * 2 1 3 32 32 H 1.08995 * 109.47320 * 120.00292 * 2 1 3 33 33 H 0.96999 * 120.00305 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.47181 * 301.19763 * 15 14 12 35 35 H 1.09001 * 109.47387 * 181.19507 * 15 14 12 36 36 H 1.08001 * 119.99831 * 359.97339 * 17 16 15 37 37 H 1.08000 * 120.00347 * 179.97438 * 18 17 16 38 38 H 1.08002 * 120.00190 * 179.72116 * 19 18 17 39 39 H 1.08003 * 119.99393 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.00089 * 180.02562 * 21 20 19 41 41 H 1.08998 * 110.96878 * 24.11197 * 22 14 12 42 42 H 1.09004 * 110.96488 * 147.86826 * 22 14 12 43 43 H 1.09004 * 110.29724 * 215.67883 * 23 22 14 44 44 H 1.09001 * 110.21525 * 93.75793 * 23 22 14 45 45 H 1.09001 * 109.46973 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.47129 * 300.00173 * 25 24 23 47 47 H 1.09003 * 109.46872 * 59.99727 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7925 2.1881 -1.0851 5 1 2.0274 3.2410 -1.0332 6 6 1.2614 1.6513 -2.2515 7 7 1.0080 0.3641 -2.3265 8 14 0.9077 2.7596 -3.7130 9 1 1.2782 4.1574 -3.3755 10 1 1.7019 2.3051 -4.8826 11 1 -0.5389 2.6973 -4.0428 12 6 2.6895 1.8587 1.0668 13 8 3.1417 2.9839 1.0449 14 6 2.8780 0.9944 2.2869 15 6 3.8127 -0.1756 1.9734 16 6 5.1628 0.3553 1.5652 17 6 6.1825 0.4390 2.4946 18 6 7.4210 0.9254 2.1201 19 6 7.6399 1.3278 0.8158 20 6 6.6201 1.2440 -0.1137 21 6 5.3811 0.7594 0.2613 22 6 1.5143 0.4756 2.7987 23 6 1.1564 1.5366 3.8659 24 7 2.4385 2.0977 4.3077 25 6 2.6226 2.8693 5.5394 26 6 3.4221 1.8133 3.4368 27 8 4.5774 2.1628 3.5552 28 1 -0.3634 0.6023 0.8326 29 1 -0.3634 0.4198 -0.9379 30 1 -0.3633 -1.0223 0.1054 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 0.6376 -0.0107 -3.1409 34 1 3.3938 -0.7674 1.1595 35 1 3.9212 -0.8014 2.8593 36 1 6.0116 0.1242 3.5135 37 1 8.2176 0.9912 2.8463 38 1 8.6062 1.7121 0.5242 39 1 6.7911 1.5587 -1.1326 40 1 4.5845 0.6936 -0.4650 41 1 0.7763 0.4617 1.9966 42 1 1.6168 -0.5115 3.2495 43 1 0.6398 1.0698 4.7047 44 1 0.5342 2.3168 3.4275 45 1 3.6673 3.1670 5.6289 46 1 1.9931 3.7585 5.5087 47 1 2.3443 2.2566 6.3969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602081082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:07 Heat of formation + Delta-G solvation = 7.976996 kcal Electronic energy + Delta-G solvation = -30991.749179 eV Core-core repulsion = 27141.523316 eV Total energy + Delta-G solvation = -3850.225863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.98975 -38.45455 -38.10559 -35.90553 -35.21628 -34.13156 -31.59879 -31.11214 -30.22880 -29.50437 -28.17943 -26.59437 -25.31719 -24.45285 -22.42497 -22.01624 -21.54418 -20.71652 -20.18044 -18.22103 -16.89104 -16.41110 -16.23835 -16.15966 -15.46121 -15.08346 -14.67843 -14.50696 -14.18196 -14.13376 -13.71690 -13.51972 -13.25007 -13.10698 -12.92163 -12.71088 -12.55559 -12.34297 -12.14961 -11.95446 -11.83767 -11.68187 -11.64070 -11.40922 -11.14446 -10.93603 -10.81900 -10.63638 -10.37052 -10.32145 -10.29307 -10.13818 -9.80579 -9.22545 -8.85552 -8.46946 -8.32771 -8.18498 -7.97215 -7.75056 -6.19466 -3.85619 1.97235 2.10338 3.06042 3.11749 3.23787 3.30840 3.32403 3.79550 4.09647 4.38071 4.61738 4.74869 4.82556 5.05139 5.11807 5.26561 5.33758 5.43451 5.47372 5.53406 5.56286 5.64024 5.67439 5.71105 5.76623 5.82857 5.92091 5.95089 6.08350 6.14629 6.22568 6.27363 6.29671 6.59309 6.61332 6.67710 6.70251 6.77943 6.83643 7.06229 7.14824 7.27965 7.38704 7.41529 7.60028 7.66088 7.74858 8.04170 8.49325 8.67956 9.16194 9.40815 9.94147 10.64751 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.006134 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.498855 B = 4563.800110 C = 5986.265637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.101 3.899 3 N -0.440 5.440 4 C -0.285 4.285 5 H 0.101 0.899 6 C 0.023 3.977 7 N -0.880 5.880 8 Si 0.927 3.073 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.471 3.529 13 O -0.574 6.574 14 C -0.097 4.097 15 C -0.065 4.065 16 C -0.078 4.078 17 C -0.072 4.072 18 C -0.133 4.133 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.090 4.090 22 C -0.148 4.148 23 C 0.107 3.893 24 N -0.630 5.630 25 C 0.099 3.901 26 C 0.549 3.451 27 O -0.504 6.504 28 H 0.023 0.977 29 H 0.097 0.903 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 -5.206 9.899 11.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 N -0.159 5.159 4 C -0.413 4.413 5 H 0.119 0.881 6 C -0.177 4.177 7 N -0.523 5.523 8 Si 0.754 3.246 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.258 3.742 13 O -0.457 6.457 14 C -0.104 4.104 15 C -0.103 4.103 16 C -0.078 4.078 17 C -0.091 4.091 18 C -0.151 4.151 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.108 4.108 22 C -0.186 4.186 23 C -0.017 4.017 24 N -0.366 5.366 25 C -0.043 4.043 26 C 0.336 3.664 27 O -0.377 6.377 28 H 0.042 0.958 29 H 0.115 0.885 30 H 0.053 0.947 31 H 0.134 0.866 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.074 0.926 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.348 -4.512 9.851 10.918 hybrid contribution -0.508 0.564 -0.607 0.972 sum 0.840 -3.948 9.244 10.087 Atomic orbital electron populations 1.22398 0.96830 0.98775 1.02734 1.22239 0.94833 0.83614 1.01434 1.43700 1.46988 1.11485 1.13753 1.19805 1.38435 0.93404 0.89663 0.88071 1.25179 0.97517 0.96313 0.98714 1.70044 1.44503 1.10469 1.27264 0.85825 0.77848 0.80142 0.80782 1.19463 1.20755 1.20803 1.18927 0.83906 0.87539 0.83864 1.90590 1.52646 1.20305 1.82135 1.21467 0.96250 0.97061 0.95628 1.20773 0.92039 0.95038 1.02409 1.19534 0.94439 1.00011 0.93844 1.20713 0.92532 0.98122 0.97685 1.20880 0.97117 1.01185 0.95930 1.20974 0.98670 1.00850 0.93823 1.20995 0.93566 1.00509 0.99290 1.21135 0.96966 0.96698 0.95973 1.23409 0.97265 0.98198 0.99691 1.22061 0.85756 0.96389 0.97461 1.48049 1.09982 1.55272 1.23290 1.21439 1.03144 0.94910 0.84788 1.20098 0.84906 0.79045 0.82393 1.90674 1.17337 1.53615 1.76111 0.95850 0.88460 0.94706 0.86581 0.93857 0.92511 0.88499 0.90958 0.87347 0.87161 0.87122 0.86782 0.85625 0.86312 0.89746 0.90700 0.91321 0.90182 0.92558 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.68 37.16 0.32 -2.54 16 2 C 0.10 2.05 4.05 -4.05 -0.02 2.04 16 3 N -0.44 -10.34 2.53 -114.81 -0.29 -10.63 16 4 C -0.29 -7.43 9.29 -14.93 -0.14 -7.57 16 5 H 0.10 2.87 7.21 -52.49 -0.38 2.50 16 6 C 0.02 0.55 4.79 -17.47 -0.08 0.47 16 7 N -0.88 -20.75 7.50 55.50 0.42 -20.33 16 8 Si 0.93 19.99 29.55 -169.99 -5.02 14.97 16 9 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.47 11.15 4.49 -10.98 -0.05 11.10 16 13 O -0.57 -16.27 15.75 5.55 0.09 -16.18 16 14 C -0.10 -1.84 0.28 -155.67 -0.04 -1.89 16 15 C -0.06 -1.13 4.12 -27.88 -0.11 -1.24 16 16 C -0.08 -1.52 4.16 -104.62 -0.44 -1.96 16 17 C -0.07 -1.33 7.27 -39.59 -0.29 -1.61 16 18 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 19 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 20 C -0.13 -2.40 10.05 -39.58 -0.40 -2.79 16 21 C -0.09 -1.87 8.58 -39.58 -0.34 -2.21 16 22 C -0.15 -2.22 4.91 -24.99 -0.12 -2.34 16 23 C 0.11 1.49 7.35 -3.01 -0.02 1.47 16 24 N -0.63 -10.31 3.33 -180.15 -0.60 -10.91 16 25 C 0.10 1.28 11.14 59.85 0.67 1.95 16 26 C 0.55 10.98 6.05 -10.86 -0.07 10.92 16 27 O -0.50 -11.42 13.70 5.56 0.08 -11.34 16 28 H 0.02 0.42 6.37 -51.93 -0.33 0.09 16 29 H 0.10 2.15 5.34 -51.93 -0.28 1.87 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.12 2.61 5.95 -51.93 -0.31 2.30 16 32 H 0.04 0.76 2.99 -51.93 -0.16 0.60 16 33 H 0.26 5.99 8.31 -40.82 -0.34 5.65 16 34 H 0.10 1.63 5.36 -51.93 -0.28 1.35 16 35 H 0.07 1.06 8.02 -51.93 -0.42 0.64 16 36 H 0.11 1.84 7.88 -52.49 -0.41 1.43 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.98 8.06 -52.48 -0.42 1.56 16 40 H 0.13 2.85 7.46 -52.49 -0.39 2.45 16 41 H 0.12 1.90 3.15 -51.93 -0.16 1.73 16 42 H 0.08 1.01 7.90 -51.93 -0.41 0.60 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.12 7.53 -51.93 -0.39 0.73 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -31.78 357.34 -8.31 -40.08 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.43 Total: 10.43 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.92 Total: -1.47 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -0.47 Total: -41.88 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: 0.16 Total: -27.52 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.78 -8.31 -40.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602081082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.058 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds