Wall clock time and date at job start Tue Mar 31 2020 17:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47098 * 2 1 4 4 C 1.37097 * 120.00276 * 293.94196 * 3 2 1 5 5 H 1.08000 * 119.99986 * 171.42614 * 4 3 2 6 6 C 1.38951 * 119.99733 * 351.43531 * 4 3 2 7 7 N 1.31406 * 120.00237 * 358.22877 * 6 4 3 8 8 Si 1.86798 * 119.99586 * 178.22946 * 6 4 3 9 9 H 1.48494 * 109.47618 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47113 * 120.00283 * 8 6 4 11 11 H 1.48501 * 109.47161 * 239.99474 * 8 6 4 12 12 C 1.34781 * 120.00177 * 113.94152 * 3 2 1 13 13 O 1.21288 * 120.00506 * 176.95520 * 12 3 2 14 14 C 1.50703 * 119.99447 * 356.95473 * 12 3 2 15 15 C 1.52997 * 110.43567 * 68.04797 * 14 12 3 16 16 C 1.50701 * 109.47316 * 61.19568 * 15 14 12 17 17 C 1.38228 * 120.00230 * 97.03244 * 16 15 14 18 18 C 1.38231 * 120.00293 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.99991 * 359.97119 * 18 17 16 20 20 C 1.38238 * 119.99577 * 0.02562 * 19 18 17 21 21 C 1.38230 * 120.00492 * 0.06984 * 20 19 18 22 22 C 1.54628 * 110.48906 * 305.50033 * 14 12 3 23 23 C 1.54684 * 101.67107 * 265.90714 * 22 14 12 24 24 N 1.46761 * 105.53514 * 334.74026 * 23 22 14 25 25 C 1.46504 * 124.35117 * 196.89988 * 24 23 22 26 26 C 1.34418 * 111.30177 * 16.92424 * 24 23 22 27 27 O 1.21282 * 124.94403 * 179.55623 * 26 24 23 28 28 H 1.08994 * 109.47376 * 305.88413 * 1 2 3 29 29 H 1.08996 * 109.47333 * 65.88597 * 1 2 3 30 30 H 1.09000 * 109.46915 * 185.88916 * 1 2 3 31 31 H 1.09006 * 109.47009 * 240.00379 * 2 1 3 32 32 H 1.08995 * 109.47320 * 120.00292 * 2 1 3 33 33 H 0.96999 * 120.00305 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.47181 * 301.19763 * 15 14 12 35 35 H 1.09001 * 109.47387 * 181.19507 * 15 14 12 36 36 H 1.08001 * 119.99831 * 359.97339 * 17 16 15 37 37 H 1.08000 * 120.00347 * 179.97438 * 18 17 16 38 38 H 1.08002 * 120.00190 * 179.72116 * 19 18 17 39 39 H 1.08003 * 119.99393 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.00089 * 180.02562 * 21 20 19 41 41 H 1.08998 * 110.96878 * 24.11197 * 22 14 12 42 42 H 1.09004 * 110.96488 * 147.86826 * 22 14 12 43 43 H 1.09004 * 110.29724 * 215.67883 * 23 22 14 44 44 H 1.09001 * 110.21525 * 93.75793 * 23 22 14 45 45 H 1.09001 * 109.46973 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.47129 * 300.00173 * 25 24 23 47 47 H 1.09003 * 109.46872 * 59.99727 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7925 2.1881 -1.0851 5 1 2.0274 3.2410 -1.0332 6 6 1.2614 1.6513 -2.2515 7 7 1.0080 0.3641 -2.3265 8 14 0.9077 2.7596 -3.7130 9 1 1.2782 4.1574 -3.3755 10 1 1.7019 2.3051 -4.8826 11 1 -0.5389 2.6973 -4.0428 12 6 2.6895 1.8587 1.0668 13 8 3.1417 2.9839 1.0449 14 6 2.8780 0.9944 2.2869 15 6 3.8127 -0.1756 1.9734 16 6 5.1628 0.3553 1.5652 17 6 6.1825 0.4390 2.4946 18 6 7.4210 0.9254 2.1201 19 6 7.6399 1.3278 0.8158 20 6 6.6201 1.2440 -0.1137 21 6 5.3811 0.7594 0.2613 22 6 1.5143 0.4756 2.7987 23 6 1.1564 1.5366 3.8659 24 7 2.4385 2.0977 4.3077 25 6 2.6226 2.8693 5.5394 26 6 3.4221 1.8133 3.4368 27 8 4.5774 2.1628 3.5552 28 1 -0.3634 0.6023 0.8326 29 1 -0.3634 0.4198 -0.9379 30 1 -0.3633 -1.0223 0.1054 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 0.6376 -0.0107 -3.1409 34 1 3.3938 -0.7674 1.1595 35 1 3.9212 -0.8014 2.8593 36 1 6.0116 0.1242 3.5135 37 1 8.2176 0.9912 2.8463 38 1 8.6062 1.7121 0.5242 39 1 6.7911 1.5587 -1.1326 40 1 4.5845 0.6936 -0.4650 41 1 0.7763 0.4617 1.9966 42 1 1.6168 -0.5115 3.2495 43 1 0.6398 1.0698 4.7047 44 1 0.5342 2.3168 3.4275 45 1 3.6673 3.1670 5.6289 46 1 1.9931 3.7585 5.5087 47 1 2.3443 2.2566 6.3969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602081082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:06 Heat of formation + Delta-G solvation = -10.880246 kcal Electronic energy + Delta-G solvation = -30992.566890 eV Core-core repulsion = 27141.523316 eV Total energy + Delta-G solvation = -3851.043574 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.45582 -39.89518 -39.72788 -37.40063 -37.04473 -35.55994 -33.40301 -32.46877 -31.66109 -31.17084 -29.50135 -27.80844 -27.11153 -25.85199 -23.96845 -23.47961 -22.99314 -22.13328 -21.74391 -19.68910 -18.76791 -17.96156 -17.64235 -17.48151 -17.14971 -16.51806 -16.16615 -15.94078 -15.84521 -15.64052 -15.32332 -15.05217 -14.72067 -14.46662 -14.39882 -14.16407 -14.04777 -13.64670 -13.49259 -13.40755 -13.26797 -13.17639 -13.04109 -12.92556 -12.64705 -12.51749 -12.40888 -12.28865 -12.07666 -11.82245 -11.78254 -11.70518 -11.45903 -10.71984 -10.63125 -10.23264 -9.69451 -9.63637 -9.60345 -9.37253 -8.08758 -5.82245 0.55296 0.64539 1.34362 1.41635 1.50666 1.60429 2.03597 2.13239 2.30405 2.94794 3.11577 3.17126 3.28517 3.57118 3.77049 3.98958 4.01884 4.06301 4.19210 4.28719 4.32210 4.38673 4.43494 4.46027 4.55395 4.63994 4.66716 4.72035 4.79912 4.83882 4.85495 4.89626 5.02457 5.08582 5.11641 5.23964 5.25337 5.28890 5.47651 5.65551 5.66816 5.69434 5.79008 5.82991 6.06556 6.09377 6.16766 6.24961 6.61637 7.24704 7.27505 7.56816 8.10848 8.71111 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.006134 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.498855 B = 4563.800110 C = 5986.265637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.104 3.896 3 N -0.441 5.441 4 C -0.325 4.325 5 H 0.062 0.938 6 C 0.006 3.994 7 N -0.871 5.871 8 Si 0.976 3.024 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.266 1.266 12 C 0.465 3.535 13 O -0.636 6.636 14 C -0.096 4.096 15 C -0.065 4.065 16 C -0.089 4.089 17 C -0.079 4.079 18 C -0.135 4.135 19 C -0.127 4.127 20 C -0.146 4.146 21 C -0.119 4.119 22 C -0.144 4.144 23 C 0.104 3.896 24 N -0.628 5.628 25 C 0.094 3.906 26 C 0.535 3.465 27 O -0.543 6.543 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.270 0.730 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 -7.288 12.069 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.017 4.017 3 N -0.159 5.159 4 C -0.453 4.453 5 H 0.080 0.920 6 C -0.195 4.195 7 N -0.512 5.512 8 Si 0.802 3.198 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.191 1.191 12 C 0.254 3.746 13 O -0.524 6.524 14 C -0.103 4.103 15 C -0.102 4.102 16 C -0.089 4.089 17 C -0.097 4.097 18 C -0.153 4.153 19 C -0.144 4.144 20 C -0.164 4.164 21 C -0.138 4.138 22 C -0.181 4.181 23 C -0.018 4.018 24 N -0.362 5.362 25 C -0.047 4.047 26 C 0.322 3.678 27 O -0.419 6.419 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.371 -6.655 12.027 13.750 hybrid contribution -0.223 1.245 -1.311 1.821 sum 0.148 -5.410 10.716 12.005 Atomic orbital electron populations 1.22233 0.95644 1.00585 1.01471 1.22262 0.95717 0.81814 1.01924 1.43816 1.46637 1.12267 1.13156 1.19510 1.41354 0.92463 0.91952 0.92039 1.25641 0.96645 0.97544 0.99710 1.70155 1.42815 1.10517 1.27714 0.85120 0.78406 0.77885 0.78416 1.21301 1.20140 1.19110 1.19699 0.82525 0.87324 0.85098 1.90535 1.54965 1.23329 1.83580 1.21387 0.99042 0.96684 0.93150 1.20862 0.90685 0.94754 1.03904 1.19779 0.95909 0.99958 0.93301 1.20965 0.92647 0.97988 0.98064 1.21332 0.97700 0.99793 0.96464 1.21314 0.99356 1.00163 0.93601 1.21221 0.93871 1.01003 1.00296 1.21057 0.96950 0.99207 0.96544 1.23495 0.94133 1.00651 0.99855 1.22279 0.84720 0.95898 0.98930 1.48233 1.09907 1.54607 1.23458 1.21680 1.02495 0.95871 0.84691 1.20330 0.85087 0.79314 0.83096 1.90629 1.19015 1.55227 1.77051 0.94824 0.91561 0.91627 0.88948 0.90546 0.91931 0.88461 0.87332 0.85809 0.83998 0.84026 0.86397 0.88855 0.87317 0.85347 0.85589 0.92739 0.91910 0.91572 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 8.68 71.98 0.63 -4.60 16 2 C 0.10 4.21 4.05 86.38 0.35 4.56 16 3 N -0.44 -21.54 2.53 -635.54 -1.61 -23.15 16 4 C -0.32 -17.91 9.29 84.04 0.78 -17.13 16 5 H 0.06 3.81 7.21 -2.91 -0.02 3.79 16 6 C 0.01 0.28 4.79 84.93 0.41 0.69 16 7 N -0.87 -41.37 7.50 21.66 0.16 -41.21 16 8 Si 0.98 41.97 29.55 68.60 2.03 44.00 16 9 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 12 C 0.47 22.86 4.49 87.66 0.39 23.25 16 13 O -0.64 -38.49 15.75 -3.05 -0.05 -38.54 16 14 C -0.10 -3.56 0.28 -52.93 -0.01 -3.58 16 15 C -0.06 -2.17 4.12 29.85 0.12 -2.05 16 16 C -0.09 -3.51 4.16 -19.87 -0.08 -3.59 16 17 C -0.08 -2.81 7.27 22.27 0.16 -2.65 16 18 C -0.14 -4.48 10.05 22.27 0.22 -4.25 16 19 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 20 C -0.15 -5.81 10.05 22.27 0.22 -5.58 16 21 C -0.12 -5.24 8.58 22.27 0.19 -5.05 16 22 C -0.14 -3.87 4.91 31.72 0.16 -3.71 16 23 C 0.10 2.55 7.35 86.90 0.64 3.19 16 24 N -0.63 -19.16 3.33 -842.47 -2.81 -21.97 16 25 C 0.09 2.19 11.14 127.77 1.42 3.61 16 26 C 0.54 21.02 6.05 87.90 0.53 21.55 16 27 O -0.54 -24.69 13.70 -3.04 -0.04 -24.73 16 28 H 0.03 1.16 6.37 -2.39 -0.02 1.14 16 29 H 0.07 2.89 5.34 -2.39 -0.01 2.88 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 4.19 5.95 -2.38 -0.01 4.18 16 32 H 0.08 2.55 2.99 -2.39 -0.01 2.54 16 33 H 0.27 12.10 8.31 -92.71 -0.77 11.33 16 34 H 0.10 3.18 5.36 -2.38 -0.01 3.16 16 35 H 0.11 2.81 8.02 -2.39 -0.02 2.79 16 36 H 0.12 3.96 7.88 -2.91 -0.02 3.94 16 37 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 38 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 39 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 40 H 0.09 4.60 7.46 -2.91 -0.02 4.58 16 41 H 0.11 3.18 3.15 -2.39 -0.01 3.17 16 42 H 0.13 2.34 7.90 -2.38 -0.02 2.32 16 43 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.06 1.70 7.53 -2.39 -0.02 1.68 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -75.84 357.34 5.03 -70.81 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.99 Total: 34.22 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 6.36 Total: 0.56 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -4.25 Total: -86.33 kcal Atomic # 8 Polarization: -63.18 SS G_CDS: -0.09 Total: -63.27 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -75.84 5.03 -70.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602081082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.929 kcal (2) G-P(sol) polarization free energy of solvation -75.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds