Wall clock time and date at job start Tue Mar 31 2020 17:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46547 * 2 1 4 4 C 1.37101 * 119.99905 * 64.45686 * 3 2 1 5 5 H 1.08005 * 119.99852 * 195.15603 * 4 3 2 6 6 C 1.38950 * 119.99957 * 15.16297 * 4 3 2 7 7 N 1.31410 * 120.00411 * 19.39985 * 6 4 3 8 8 Si 1.86797 * 119.99888 * 199.40707 * 6 4 3 9 9 H 1.48504 * 109.47024 * 89.99368 * 8 6 4 10 10 H 1.48500 * 109.47454 * 209.99639 * 8 6 4 11 11 H 1.48499 * 109.47036 * 329.99955 * 8 6 4 12 12 C 1.34775 * 119.99940 * 244.45349 * 3 2 1 13 13 O 1.21292 * 119.99672 * 182.72295 * 12 3 2 14 14 C 1.50694 * 120.00007 * 2.71666 * 12 3 2 15 15 C 1.52995 * 110.54274 * 293.25272 * 14 12 3 16 16 C 1.50697 * 109.47323 * 298.45243 * 15 14 12 17 17 C 1.38234 * 120.00117 * 263.16039 * 16 15 14 18 18 C 1.38242 * 119.99855 * 179.76546 * 17 16 15 19 19 C 1.38236 * 120.00052 * 0.48438 * 18 17 16 20 20 C 1.38241 * 119.99781 * 359.79506 * 19 18 17 21 21 C 1.38236 * 120.00278 * 359.94857 * 20 19 18 22 22 C 1.54625 * 110.48593 * 55.87112 * 14 12 3 23 23 C 1.54482 * 101.76816 * 93.87700 * 22 14 12 24 24 N 1.46763 * 105.47310 * 25.41497 * 23 22 14 25 25 C 1.46500 * 124.34798 * 163.00313 * 24 23 22 26 26 C 1.34419 * 111.29774 * 342.98857 * 24 23 22 27 27 O 1.21290 * 124.93807 * 180.38774 * 26 24 23 28 28 H 1.09005 * 109.47072 * 172.11129 * 1 2 3 29 29 H 1.08999 * 109.47428 * 292.10707 * 1 2 3 30 30 H 1.08999 * 109.47241 * 52.11063 * 1 2 3 31 31 H 1.09001 * 109.47009 * 240.00670 * 2 1 3 32 32 H 1.08998 * 109.47147 * 119.99987 * 2 1 3 33 33 H 0.96997 * 120.00598 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46932 * 58.45515 * 15 14 12 35 35 H 1.08995 * 109.47467 * 178.45480 * 15 14 12 36 36 H 1.07998 * 119.99976 * 359.97438 * 17 16 15 37 37 H 1.07994 * 119.99954 * 180.25512 * 18 17 16 38 38 H 1.07995 * 120.00195 * 179.76795 * 19 18 17 39 39 H 1.08000 * 119.99984 * 179.97438 * 20 19 18 40 40 H 1.07993 * 120.00002 * 180.02562 * 21 20 19 41 41 H 1.08999 * 110.96892 * 335.75342 * 22 14 12 42 42 H 1.09009 * 110.96901 * 212.00045 * 22 14 12 43 43 H 1.08998 * 110.24241 * 266.41240 * 23 22 14 44 44 H 1.08999 * 110.24232 * 144.41496 * 23 22 14 45 45 H 1.09000 * 109.46713 * 90.00049 * 25 24 23 46 46 H 1.09007 * 109.46731 * 210.00345 * 25 24 23 47 47 H 1.08996 * 109.46932 * 330.00070 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 1.7639 2.1982 1.0713 5 1 1.8998 3.2658 0.9805 6 6 1.3316 1.6526 2.2738 7 7 1.5231 0.3767 2.5231 8 14 0.4778 2.7329 3.5361 9 1 -0.9866 2.7197 3.2895 10 1 0.7547 2.2144 4.8998 11 1 0.9863 4.1234 3.4225 12 6 2.7173 1.8489 -1.0531 13 8 3.1639 2.9765 -1.0320 14 6 2.9444 0.9709 -2.2565 15 6 3.8488 -0.2096 -1.8969 16 6 5.1915 0.3053 -1.4463 17 6 6.2439 0.3664 -2.3405 18 6 7.4743 0.8433 -1.9284 19 6 7.6549 1.2497 -0.6195 20 6 6.6040 1.1832 0.2761 21 6 5.3722 0.7113 -0.1373 22 6 1.5959 0.4671 -2.8210 23 6 1.2944 1.5238 -3.9069 24 7 2.6010 2.0629 -4.3021 25 6 2.8448 2.8210 -5.5317 26 6 3.5452 1.7719 -3.3906 27 8 4.7095 2.1031 -3.4665 28 1 -0.3633 -1.0180 -0.1411 29 1 -0.3634 0.3867 0.9521 30 1 -0.3634 0.6311 -0.8110 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.2210 -0.0043 3.3624 34 1 3.3918 -0.7855 -1.0922 35 1 3.9791 -0.8471 -2.7713 36 1 6.1040 0.0447 -3.3620 37 1 8.2953 0.8949 -2.6280 38 1 8.6171 1.6188 -0.2966 39 1 6.7452 1.5003 1.2988 40 1 4.5512 0.6598 0.5623 41 1 0.8252 0.4691 -2.0502 42 1 1.7031 -0.5245 -3.2608 43 1 0.6674 2.3162 -3.4983 44 1 0.8047 1.0572 -4.7616 45 1 2.6950 3.8833 -5.3393 46 1 3.8689 2.6529 -5.8651 47 1 2.1520 2.4906 -6.3056 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602081083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:12 Heat of formation + Delta-G solvation = -3.444004 kcal Electronic energy + Delta-G solvation = -30978.079251 eV Core-core repulsion = 27127.358137 eV Total energy + Delta-G solvation = -3850.721115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99405 -38.42860 -38.07393 -35.91692 -35.14695 -34.11818 -31.65161 -31.11538 -30.18819 -29.54772 -28.19143 -26.63935 -25.35801 -24.48223 -22.52438 -21.97608 -21.53037 -20.69504 -20.14061 -18.20732 -16.91341 -16.39082 -16.22899 -16.14574 -15.44681 -15.07237 -14.70582 -14.51051 -14.23083 -14.14690 -13.72244 -13.51100 -13.26549 -13.09744 -12.91255 -12.68763 -12.52250 -12.33589 -12.20871 -11.93119 -11.81373 -11.76391 -11.71832 -11.50637 -11.15742 -11.04447 -10.91706 -10.68234 -10.35701 -10.31112 -10.27574 -10.21116 -9.72548 -9.22187 -9.15998 -8.47439 -8.33651 -8.14400 -7.93908 -7.70525 -6.21968 -3.87099 2.00635 2.14226 3.06168 3.12805 3.24332 3.29735 3.31164 3.78313 4.11590 4.40298 4.60315 4.73673 4.79698 5.02549 5.10686 5.24847 5.31375 5.44591 5.46991 5.52690 5.58968 5.63432 5.67279 5.72998 5.75618 5.81891 5.89199 5.94707 6.03401 6.13389 6.17063 6.22867 6.32696 6.42039 6.46058 6.58779 6.68436 6.74792 6.82422 7.09449 7.19949 7.20678 7.31973 7.37321 7.40705 7.67960 7.70298 8.07405 8.50583 8.67727 9.16577 9.41610 9.95517 10.66126 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.006138 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.679491 B = 4560.760839 C = 5989.346316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 N -0.435 5.435 4 C -0.298 4.298 5 H 0.099 0.901 6 C 0.035 3.965 7 N -0.873 5.873 8 Si 0.918 3.082 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.271 1.271 12 C 0.474 3.526 13 O -0.571 6.571 14 C -0.098 4.098 15 C -0.065 4.065 16 C -0.079 4.079 17 C -0.073 4.073 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.089 4.089 22 C -0.144 4.144 23 C 0.107 3.893 24 N -0.631 5.631 25 C 0.102 3.898 26 C 0.549 3.451 27 O -0.503 6.503 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.129 0.871 33 H 0.267 0.733 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -5.575 -10.546 11.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 N -0.153 5.153 4 C -0.426 4.426 5 H 0.117 0.883 6 C -0.168 4.168 7 N -0.514 5.514 8 Si 0.745 3.255 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.195 1.195 12 C 0.261 3.739 13 O -0.453 6.453 14 C -0.106 4.106 15 C -0.103 4.103 16 C -0.079 4.079 17 C -0.091 4.091 18 C -0.152 4.152 19 C -0.143 4.143 20 C -0.143 4.143 21 C -0.107 4.107 22 C -0.182 4.182 23 C -0.017 4.017 24 N -0.367 5.367 25 C -0.040 4.040 26 C 0.335 3.665 27 O -0.375 6.375 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.148 0.852 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.499 -4.900 -10.467 11.568 hybrid contribution -0.720 0.604 0.562 1.095 sum -0.221 -4.296 -9.905 10.799 Atomic orbital electron populations 1.22016 0.97500 0.99107 1.02066 1.22422 0.94061 0.84799 1.03564 1.43586 1.45624 1.11205 1.14935 1.19613 1.42267 0.91670 0.89038 0.88304 1.25102 0.98073 0.96113 0.97486 1.69679 1.44883 1.12219 1.24580 0.86033 0.79577 0.80401 0.79448 1.20479 1.21042 1.19515 1.19010 0.82945 0.87757 0.84220 1.90593 1.52809 1.20282 1.81659 1.21498 0.96149 0.97224 0.95680 1.20772 0.92480 0.94895 1.02117 1.19522 0.94308 1.00179 0.93927 1.20708 0.92458 0.98219 0.97713 1.20868 0.97225 1.01302 0.95799 1.20975 0.98487 1.00890 0.93981 1.21006 0.93424 1.00502 0.99402 1.21205 0.97355 0.96357 0.95744 1.23269 0.97540 0.98435 0.98953 1.22044 0.85222 0.96580 0.97816 1.48063 1.10116 1.56161 1.22319 1.21423 1.02045 0.95520 0.85009 1.20086 0.85219 0.78891 0.82314 1.90682 1.16324 1.53702 1.76838 0.93898 0.91314 0.94460 0.92818 0.85353 0.92239 0.88399 0.90980 0.87418 0.87212 0.87165 0.86789 0.85239 0.86896 0.89641 0.91306 0.90655 0.93018 0.91021 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.97 37.16 0.33 -2.37 16 2 C 0.07 1.48 3.92 -4.04 -0.02 1.46 16 3 N -0.43 -10.17 2.52 -114.81 -0.29 -10.45 16 4 C -0.30 -7.79 9.06 -14.93 -0.14 -7.92 16 5 H 0.10 2.82 7.36 -52.48 -0.39 2.44 16 6 C 0.03 0.85 4.03 -17.47 -0.07 0.78 16 7 N -0.87 -21.07 9.64 55.50 0.54 -20.54 16 8 Si 0.92 19.94 29.59 -169.99 -5.03 14.91 16 9 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.47 11.21 4.57 -10.99 -0.05 11.16 16 13 O -0.57 -16.25 15.78 5.55 0.09 -16.17 16 14 C -0.10 -1.86 0.28 -155.68 -0.04 -1.90 16 15 C -0.06 -1.13 4.11 -27.89 -0.11 -1.24 16 16 C -0.08 -1.56 4.15 -104.62 -0.43 -2.00 16 17 C -0.07 -1.35 7.24 -39.58 -0.29 -1.64 16 18 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 19 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 20 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 21 C -0.09 -1.89 8.61 -39.58 -0.34 -2.23 16 22 C -0.14 -2.10 4.89 -25.10 -0.12 -2.22 16 23 C 0.11 1.45 7.35 -3.12 -0.02 1.42 16 24 N -0.63 -10.19 3.33 -180.29 -0.60 -10.79 16 25 C 0.10 1.30 10.96 59.85 0.66 1.96 16 26 C 0.55 10.93 6.04 -10.86 -0.07 10.87 16 27 O -0.50 -11.42 13.91 5.55 0.08 -11.34 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.43 6.33 -51.93 -0.33 1.10 16 30 H 0.04 0.64 6.58 -51.93 -0.34 0.29 16 31 H 0.05 0.91 2.98 -51.93 -0.15 0.76 16 32 H 0.13 2.86 5.51 -51.93 -0.29 2.57 16 33 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 34 H 0.10 1.65 5.28 -51.93 -0.27 1.38 16 35 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 36 H 0.11 1.84 7.87 -52.49 -0.41 1.43 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.13 3.04 7.48 -52.49 -0.39 2.65 16 41 H 0.11 1.72 3.51 -51.93 -0.18 1.53 16 42 H 0.09 0.98 7.90 -51.92 -0.41 0.57 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -32.45 360.36 -8.21 -40.66 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.51 Total: 10.37 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.91 Total: -2.08 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.35 Total: -41.78 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: 0.16 Total: -27.51 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.45 -8.21 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602081083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.216 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds