Wall clock time and date at job start Tue Mar 31 2020 17:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46547 * 2 1 4 4 C 1.37101 * 119.99905 * 64.45686 * 3 2 1 5 5 H 1.08005 * 119.99852 * 195.15603 * 4 3 2 6 6 C 1.38950 * 119.99957 * 15.16297 * 4 3 2 7 7 N 1.31410 * 120.00411 * 19.39985 * 6 4 3 8 8 Si 1.86797 * 119.99888 * 199.40707 * 6 4 3 9 9 H 1.48504 * 109.47024 * 89.99368 * 8 6 4 10 10 H 1.48500 * 109.47454 * 209.99639 * 8 6 4 11 11 H 1.48499 * 109.47036 * 329.99955 * 8 6 4 12 12 C 1.34775 * 119.99940 * 244.45349 * 3 2 1 13 13 O 1.21292 * 119.99672 * 182.72295 * 12 3 2 14 14 C 1.50694 * 120.00007 * 2.71666 * 12 3 2 15 15 C 1.52995 * 110.54274 * 293.25272 * 14 12 3 16 16 C 1.50697 * 109.47323 * 298.45243 * 15 14 12 17 17 C 1.38234 * 120.00117 * 263.16039 * 16 15 14 18 18 C 1.38242 * 119.99855 * 179.76546 * 17 16 15 19 19 C 1.38236 * 120.00052 * 0.48438 * 18 17 16 20 20 C 1.38241 * 119.99781 * 359.79506 * 19 18 17 21 21 C 1.38236 * 120.00278 * 359.94857 * 20 19 18 22 22 C 1.54625 * 110.48593 * 55.87112 * 14 12 3 23 23 C 1.54482 * 101.76816 * 93.87700 * 22 14 12 24 24 N 1.46763 * 105.47310 * 25.41497 * 23 22 14 25 25 C 1.46500 * 124.34798 * 163.00313 * 24 23 22 26 26 C 1.34419 * 111.29774 * 342.98857 * 24 23 22 27 27 O 1.21290 * 124.93807 * 180.38774 * 26 24 23 28 28 H 1.09005 * 109.47072 * 172.11129 * 1 2 3 29 29 H 1.08999 * 109.47428 * 292.10707 * 1 2 3 30 30 H 1.08999 * 109.47241 * 52.11063 * 1 2 3 31 31 H 1.09001 * 109.47009 * 240.00670 * 2 1 3 32 32 H 1.08998 * 109.47147 * 119.99987 * 2 1 3 33 33 H 0.96997 * 120.00598 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46932 * 58.45515 * 15 14 12 35 35 H 1.08995 * 109.47467 * 178.45480 * 15 14 12 36 36 H 1.07998 * 119.99976 * 359.97438 * 17 16 15 37 37 H 1.07994 * 119.99954 * 180.25512 * 18 17 16 38 38 H 1.07995 * 120.00195 * 179.76795 * 19 18 17 39 39 H 1.08000 * 119.99984 * 179.97438 * 20 19 18 40 40 H 1.07993 * 120.00002 * 180.02562 * 21 20 19 41 41 H 1.08999 * 110.96892 * 335.75342 * 22 14 12 42 42 H 1.09009 * 110.96901 * 212.00045 * 22 14 12 43 43 H 1.08998 * 110.24241 * 266.41240 * 23 22 14 44 44 H 1.08999 * 110.24232 * 144.41496 * 23 22 14 45 45 H 1.09000 * 109.46713 * 90.00049 * 25 24 23 46 46 H 1.09007 * 109.46731 * 210.00345 * 25 24 23 47 47 H 1.08996 * 109.46932 * 330.00070 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 1.7639 2.1982 1.0713 5 1 1.8998 3.2658 0.9805 6 6 1.3316 1.6526 2.2738 7 7 1.5231 0.3767 2.5231 8 14 0.4778 2.7329 3.5361 9 1 -0.9866 2.7197 3.2895 10 1 0.7547 2.2144 4.8998 11 1 0.9863 4.1234 3.4225 12 6 2.7173 1.8489 -1.0531 13 8 3.1639 2.9765 -1.0320 14 6 2.9444 0.9709 -2.2565 15 6 3.8488 -0.2096 -1.8969 16 6 5.1915 0.3053 -1.4463 17 6 6.2439 0.3664 -2.3405 18 6 7.4743 0.8433 -1.9284 19 6 7.6549 1.2497 -0.6195 20 6 6.6040 1.1832 0.2761 21 6 5.3722 0.7113 -0.1373 22 6 1.5959 0.4671 -2.8210 23 6 1.2944 1.5238 -3.9069 24 7 2.6010 2.0629 -4.3021 25 6 2.8448 2.8210 -5.5317 26 6 3.5452 1.7719 -3.3906 27 8 4.7095 2.1031 -3.4665 28 1 -0.3633 -1.0180 -0.1411 29 1 -0.3634 0.3867 0.9521 30 1 -0.3634 0.6311 -0.8110 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.2210 -0.0043 3.3624 34 1 3.3918 -0.7855 -1.0922 35 1 3.9791 -0.8471 -2.7713 36 1 6.1040 0.0447 -3.3620 37 1 8.2953 0.8949 -2.6280 38 1 8.6171 1.6188 -0.2966 39 1 6.7452 1.5003 1.2988 40 1 4.5512 0.6598 0.5623 41 1 0.8252 0.4691 -2.0502 42 1 1.7031 -0.5245 -3.2608 43 1 0.6674 2.3162 -3.4983 44 1 0.8047 1.0572 -4.7616 45 1 2.6950 3.8833 -5.3393 46 1 3.8689 2.6529 -5.8651 47 1 2.1520 2.4906 -6.3056 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602081083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:11 Heat of formation + Delta-G solvation = -23.294031 kcal Electronic energy + Delta-G solvation = -30978.940013 eV Core-core repulsion = 27127.358137 eV Total energy + Delta-G solvation = -3851.581877 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.45084 -39.87904 -39.70866 -37.39310 -36.98017 -35.55012 -33.47366 -32.45421 -31.65312 -31.18325 -29.51345 -27.84480 -27.16571 -25.86855 -24.02436 -23.46853 -22.96473 -22.12694 -21.70079 -19.67189 -18.79222 -17.92835 -17.63696 -17.46864 -17.15794 -16.51837 -16.23497 -15.95645 -15.85918 -15.63762 -15.32238 -15.00942 -14.72348 -14.47073 -14.38794 -14.16094 -13.99501 -13.62261 -13.56665 -13.44497 -13.25288 -13.22884 -13.06971 -12.97285 -12.72081 -12.57172 -12.40599 -12.29138 -12.12190 -11.85278 -11.78445 -11.70118 -11.32697 -11.03172 -10.67923 -10.23797 -9.70253 -9.61907 -9.58975 -9.36591 -8.11991 -5.86358 0.55897 0.65011 1.34695 1.41273 1.49256 1.60305 2.02549 2.13202 2.31559 2.94949 3.12997 3.14098 3.28455 3.56632 3.77542 3.98769 4.03000 4.06553 4.19274 4.28838 4.32407 4.37637 4.42442 4.46212 4.54629 4.62688 4.65708 4.70286 4.76457 4.79350 4.84420 4.87209 4.95412 5.03018 5.07343 5.16046 5.25812 5.27139 5.49311 5.65833 5.66382 5.68496 5.70684 5.82812 5.84546 6.08621 6.18573 6.25672 6.61981 7.24542 7.27575 7.56606 8.11681 8.71303 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.006138 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.679491 B = 4560.760839 C = 5989.346316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 N -0.436 5.436 4 C -0.334 4.334 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.873 5.873 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.275 1.275 11 H -0.287 1.287 12 C 0.468 3.532 13 O -0.635 6.635 14 C -0.097 4.097 15 C -0.065 4.065 16 C -0.089 4.089 17 C -0.078 4.078 18 C -0.135 4.135 19 C -0.127 4.127 20 C -0.147 4.147 21 C -0.119 4.119 22 C -0.140 4.140 23 C 0.103 3.897 24 N -0.627 5.627 25 C 0.096 3.904 26 C 0.534 3.466 27 O -0.543 6.543 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.272 0.728 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.131 0.869 43 H 0.055 0.945 44 H 0.129 0.871 45 H 0.043 0.957 46 H 0.066 0.934 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 -7.730 -12.950 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 N -0.153 5.153 4 C -0.462 4.462 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.512 5.512 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.200 1.200 11 H -0.212 1.212 12 C 0.257 3.743 13 O -0.523 6.523 14 C -0.104 4.104 15 C -0.102 4.102 16 C -0.089 4.089 17 C -0.096 4.096 18 C -0.153 4.153 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.137 4.137 22 C -0.177 4.177 23 C -0.019 4.019 24 N -0.362 5.362 25 C -0.045 4.045 26 C 0.321 3.679 27 O -0.419 6.419 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.149 0.851 43 H 0.073 0.927 44 H 0.147 0.853 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.619 -7.112 -12.877 14.724 hybrid contribution -0.359 1.316 1.338 1.911 sum -0.978 -5.796 -11.540 12.950 Atomic orbital electron populations 1.21933 0.95850 1.01351 1.00817 1.22482 0.95364 0.82768 1.03997 1.43713 1.45279 1.12094 1.14220 1.19333 1.45160 0.90594 0.91143 0.92308 1.25583 0.97597 0.97241 0.98121 1.69794 1.43850 1.12581 1.24933 0.85315 0.79265 0.78172 0.77916 1.18974 1.20003 1.21246 1.19807 0.81514 0.87524 0.85486 1.90538 1.55171 1.23384 1.83199 1.21409 0.99012 0.96697 0.93301 1.20869 0.91067 0.94711 1.03580 1.19780 0.95942 0.99976 0.93248 1.20973 0.92475 0.97991 0.98174 1.21329 0.97949 0.99842 0.96200 1.21306 0.99065 1.00217 0.93857 1.21212 0.93869 1.01148 1.00272 1.21088 0.97099 0.99037 0.96476 1.23379 0.94310 1.00955 0.99097 1.22293 0.83999 0.96131 0.99469 1.48244 1.10210 1.55355 1.22365 1.21664 1.03149 0.94901 0.84746 1.20342 0.85339 0.79145 0.83108 1.90635 1.18087 1.55393 1.77811 0.90298 0.94353 0.93425 0.89524 0.87776 0.91726 0.88410 0.87196 0.85720 0.83967 0.84069 0.86668 0.88800 0.87606 0.85124 0.92667 0.85339 0.93872 0.91567 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 8.97 71.98 0.65 -4.30 16 2 C 0.08 2.99 3.92 86.38 0.34 3.33 16 3 N -0.44 -21.19 2.52 -635.53 -1.60 -22.79 16 4 C -0.33 -18.51 9.06 84.04 0.76 -17.75 16 5 H 0.06 3.67 7.36 -2.91 -0.02 3.64 16 6 C 0.02 0.88 4.03 84.93 0.34 1.22 16 7 N -0.87 -42.85 9.64 21.66 0.21 -42.64 16 8 Si 0.97 41.83 29.59 68.60 2.03 43.86 16 9 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 12 C 0.47 22.99 4.57 87.66 0.40 23.39 16 13 O -0.64 -38.64 15.78 -3.07 -0.05 -38.69 16 14 C -0.10 -3.59 0.28 -52.94 -0.01 -3.60 16 15 C -0.06 -2.18 4.11 29.85 0.12 -2.05 16 16 C -0.09 -3.55 4.15 -19.87 -0.08 -3.63 16 17 C -0.08 -2.82 7.24 22.27 0.16 -2.66 16 18 C -0.14 -4.56 10.05 22.27 0.22 -4.34 16 19 C -0.13 -4.43 10.05 22.27 0.22 -4.21 16 20 C -0.15 -6.03 10.05 22.27 0.22 -5.81 16 21 C -0.12 -5.35 8.61 22.27 0.19 -5.15 16 22 C -0.14 -3.60 4.89 31.65 0.15 -3.45 16 23 C 0.10 2.43 7.35 86.83 0.64 3.07 16 24 N -0.63 -18.85 3.33 -842.89 -2.81 -21.66 16 25 C 0.10 2.22 10.96 127.77 1.40 3.62 16 26 C 0.53 20.87 6.04 87.90 0.53 21.41 16 27 O -0.54 -24.75 13.91 -3.06 -0.04 -24.79 16 28 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.04 1.56 6.33 -2.39 -0.02 1.54 16 30 H 0.05 1.55 6.58 -2.39 -0.02 1.53 16 31 H 0.09 2.81 2.98 -2.39 -0.01 2.80 16 32 H 0.10 4.70 5.51 -2.39 -0.01 4.69 16 33 H 0.27 12.62 8.31 -92.71 -0.77 11.85 16 34 H 0.10 3.21 5.28 -2.39 -0.01 3.20 16 35 H 0.11 2.82 8.01 -2.39 -0.02 2.80 16 36 H 0.12 4.01 7.87 -2.91 -0.02 3.98 16 37 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 38 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.09 4.80 7.48 -2.91 -0.02 4.78 16 41 H 0.11 2.91 3.51 -2.39 -0.01 2.90 16 42 H 0.13 2.21 7.90 -2.38 -0.02 2.19 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 1.61 7.93 -2.38 -0.02 1.59 16 47 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -78.31 360.36 4.99 -73.32 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.99 Total: 34.30 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 6.26 Total: -0.91 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -4.20 Total: -87.09 kcal Atomic # 8 Polarization: -63.39 SS G_CDS: -0.09 Total: -63.48 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -78.31 4.99 -73.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602081083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.024 kcal (2) G-P(sol) polarization free energy of solvation -78.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds