Wall clock time and date at job start Tue Mar 31 2020 15:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46916 * 2 1 4 4 C 1.50698 * 109.47225 * 119.99313 * 2 1 3 5 5 H 1.08008 * 119.99858 * 120.00034 * 4 2 1 6 6 C 1.37877 * 120.00228 * 300.00275 * 4 2 1 7 7 N 1.31516 * 119.99981 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99977 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47040 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46839 * 119.99739 * 8 6 4 11 11 H 1.48501 * 109.47178 * 239.99825 * 8 6 4 12 12 N 1.46492 * 109.46980 * 239.99705 * 2 1 3 13 13 C 1.34775 * 120.00288 * 85.00309 * 12 2 1 14 14 O 1.21279 * 119.99861 * 354.97370 * 13 12 2 15 15 C 1.50705 * 120.00102 * 174.98188 * 13 12 2 16 16 C 1.52995 * 110.43413 * 66.00033 * 15 13 12 17 17 C 1.50690 * 109.47739 * 61.95626 * 16 15 13 18 18 C 1.38230 * 120.00319 * 93.00571 * 17 16 15 19 19 C 1.38240 * 120.00204 * 180.27931 * 18 17 16 20 20 C 1.38232 * 119.99939 * 359.46881 * 19 18 17 21 21 C 1.38237 * 119.99803 * 0.55964 * 20 19 18 22 22 C 1.38231 * 119.99934 * 359.69158 * 21 20 19 23 23 C 1.54626 * 110.48322 * 303.45453 * 15 13 12 24 24 C 1.54484 * 101.76101 * 216.39376 * 23 15 13 25 25 N 1.46762 * 105.47704 * 25.41884 * 24 23 15 26 26 C 1.46493 * 124.35125 * 162.98158 * 25 24 23 27 27 C 1.34425 * 111.29877 * 342.98367 * 25 24 23 28 28 O 1.21277 * 124.93828 * 180.44793 * 27 25 24 29 29 H 1.09001 * 109.47025 * 300.00223 * 1 2 3 30 30 H 1.08999 * 109.47384 * 60.00419 * 1 2 3 31 31 H 1.09002 * 109.46926 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99952 * 180.02562 * 7 6 4 33 33 H 0.96999 * 120.00189 * 264.99536 * 12 2 1 34 34 H 1.09005 * 109.47235 * 301.95073 * 16 15 13 35 35 H 1.09004 * 109.47159 * 181.95883 * 16 15 13 36 36 H 1.07998 * 120.00287 * 0.02562 * 18 17 16 37 37 H 1.07996 * 120.00200 * 179.73168 * 19 18 17 38 38 H 1.08001 * 120.00659 * 180.27835 * 20 19 18 39 39 H 1.08002 * 120.00028 * 179.71862 * 21 20 19 40 40 H 1.08007 * 119.99996 * 180.02562 * 22 21 20 41 41 H 1.09000 * 110.96910 * 334.50992 * 23 15 13 42 42 H 1.08999 * 110.96856 * 98.27608 * 23 15 13 43 43 H 1.09002 * 110.24424 * 144.42290 * 24 23 15 44 44 H 1.09003 * 110.24644 * 266.41387 * 24 23 15 45 45 H 1.09004 * 109.46972 * 90.00064 * 26 25 24 46 46 H 1.08999 * 109.47489 * 210.00196 * 26 25 24 47 47 H 1.09002 * 109.47468 * 330.00415 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2391 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3214 -1.1200 4.0081 9 1 3.1465 -2.2866 3.6040 10 1 3.1467 -0.1869 4.8164 11 1 1.1661 -1.5863 4.8163 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.7736 1.1328 -2.4359 15 6 2.7549 -0.6972 -3.5575 16 6 1.8542 -1.8357 -4.0404 17 6 0.5216 -1.2759 -4.4663 18 6 0.3061 -0.9339 -5.7882 19 6 -0.9146 -0.4150 -6.1778 20 6 -1.9234 -0.2483 -5.2475 21 6 -1.7077 -0.5897 -3.9255 22 6 -0.4854 -1.1038 -3.5349 23 6 4.1669 -1.2298 -3.2205 24 6 4.9202 -0.9861 -4.5470 25 7 4.2114 0.1193 -5.2025 26 6 4.7637 0.9223 -6.2962 27 6 2.9903 0.3002 -4.6703 28 8 2.1932 1.1402 -5.0306 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7087 1.1615 3.4843 33 1 2.2490 -1.6318 -1.1525 34 1 1.7061 -2.5503 -3.2307 35 1 2.3246 -2.3374 -4.8861 36 1 1.0927 -1.0683 -6.5159 37 1 -1.0815 -0.1438 -7.2097 38 1 -2.8785 0.1529 -5.5527 39 1 -2.4944 -0.4553 -3.1978 40 1 -0.3170 -1.3710 -2.5021 41 1 4.6151 -0.6594 -2.4069 42 1 4.1357 -2.2923 -2.9792 43 1 5.9544 -0.7054 -4.3474 44 1 4.8848 -1.8794 -5.1706 45 1 4.5054 0.4631 -7.2505 46 1 4.3484 1.9292 -6.2534 47 1 5.8482 0.9722 -6.1988 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602087675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:08 Heat of formation + Delta-G solvation = -40.585632 kcal Electronic energy + Delta-G solvation = -29948.111841 eV Core-core repulsion = 26095.780145 eV Total energy + Delta-G solvation = -3852.331697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.14595 -38.75507 -38.22505 -36.26717 -34.74810 -34.26552 -32.25520 -31.53276 -30.56990 -29.11879 -28.01997 -26.84408 -25.32674 -25.19131 -22.67172 -22.24428 -21.22727 -21.11599 -19.67446 -18.83178 -17.39193 -16.66604 -16.23681 -16.16710 -15.57973 -15.20742 -14.97636 -14.84319 -14.71257 -14.45043 -13.99262 -13.73780 -13.32489 -13.19397 -13.01105 -12.89188 -12.58007 -12.47994 -12.41242 -12.24561 -12.12685 -11.98262 -11.79476 -11.62971 -11.35068 -11.09488 -10.95248 -10.77966 -10.64561 -10.60287 -10.28535 -10.20944 -9.47253 -9.03859 -8.90341 -8.68553 -8.54610 -8.53466 -8.37322 -7.86986 -6.11841 -4.21458 1.62858 1.75674 2.77543 3.01908 3.22860 3.30817 3.32829 3.40608 3.97592 4.08799 4.25993 4.34651 4.49940 4.81121 4.82990 5.03027 5.05409 5.17326 5.20382 5.23371 5.27014 5.33440 5.36959 5.38077 5.44941 5.59327 5.63222 5.65211 5.77844 5.89190 5.91649 5.95562 6.29387 6.34945 6.55080 6.74082 6.81840 6.85510 6.88822 7.02475 7.12921 7.18898 7.32011 7.49629 7.57907 7.70145 7.93868 8.17177 8.41951 8.67827 8.79686 9.16179 9.46593 10.93913 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004485 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.804061 B = 6241.911385 C = 7700.346241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.269 3.731 3 H 0.045 0.955 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.523 3.477 14 O -0.522 6.522 15 C -0.113 4.113 16 C -0.054 4.054 17 C -0.087 4.087 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.096 4.096 23 C -0.126 4.126 24 C 0.107 3.893 25 N -0.634 5.634 26 C 0.101 3.899 27 C 0.538 3.462 28 O -0.481 6.481 29 H 0.088 0.912 30 H 0.018 0.982 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.386 0.614 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 -8.388 -16.803 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.167 3.833 3 H 0.063 0.937 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.357 5.357 13 C 0.305 3.695 14 O -0.397 6.397 15 C -0.121 4.121 16 C -0.092 4.092 17 C -0.087 4.087 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.114 4.114 23 C -0.164 4.164 24 C -0.016 4.016 25 N -0.371 5.371 26 C -0.041 4.041 27 C 0.323 3.677 28 O -0.352 6.352 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.218 0.782 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.543 -6.870 -16.947 18.842 hybrid contribution 0.578 -0.802 0.935 1.360 sum 5.121 -7.672 -16.012 18.479 Atomic orbital electron populations 1.22079 0.98482 0.98927 1.01055 1.18700 0.91088 0.93698 0.79765 0.93728 1.21242 1.32384 1.13169 0.90272 0.92035 1.24886 0.94833 0.94938 0.99027 1.69921 1.35830 1.22458 1.23733 0.86421 0.78594 0.79506 0.82713 1.19744 1.20956 1.20916 1.46439 1.65879 1.13249 1.10148 1.19459 0.79731 0.86958 0.83375 1.90754 1.48469 1.17356 1.83169 1.21730 0.97055 0.97203 0.96076 1.20468 0.91877 0.94869 1.01997 1.19574 0.94818 1.00460 0.93818 1.20767 0.96653 0.98711 0.95141 1.20948 0.93752 1.00207 0.99174 1.21060 0.98934 1.00310 0.93595 1.21084 0.97471 0.99027 0.95915 1.21130 0.92931 0.98070 0.99237 1.22780 0.92543 1.03388 0.97719 1.22046 0.96711 0.89637 0.93254 1.48086 1.17104 1.34939 1.36992 1.21461 0.98576 0.95806 0.88249 1.19977 0.81234 0.83877 0.82582 1.90747 1.47453 1.34168 1.62801 0.89338 0.96284 0.95601 0.92655 0.78195 0.89222 0.90116 0.87325 0.86747 0.86626 0.86284 0.85706 0.88915 0.88228 0.90296 0.91102 0.92983 0.90796 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.13 37.16 0.34 -3.28 16 2 C 0.27 6.71 2.52 -69.09 -0.17 6.54 16 3 H 0.04 1.31 7.65 -51.93 -0.40 0.92 16 4 C -0.53 -13.68 8.73 -34.44 -0.30 -13.98 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.71 -14.17 4.93 -54.94 -0.27 -14.44 16 13 C 0.52 10.58 4.79 -10.98 -0.05 10.53 16 14 O -0.52 -13.40 15.05 -13.80 -0.21 -13.61 16 15 C -0.11 -1.72 0.48 -155.67 -0.08 -1.79 16 16 C -0.05 -0.70 4.40 -27.89 -0.12 -0.82 16 17 C -0.09 -1.36 4.24 -104.63 -0.44 -1.80 16 18 C -0.09 -1.43 8.05 -39.58 -0.32 -1.75 16 19 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 20 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 21 C -0.12 -1.90 10.05 -39.58 -0.40 -2.29 16 22 C -0.10 -1.64 8.70 -39.58 -0.34 -1.98 16 23 C -0.13 -1.38 6.03 -25.10 -0.15 -1.53 16 24 C 0.11 0.97 7.35 -3.12 -0.02 0.94 16 25 N -0.63 -7.98 3.33 -180.29 -0.60 -8.58 16 26 C 0.10 1.01 10.96 59.84 0.66 1.67 16 27 C 0.54 9.10 5.81 -10.86 -0.06 9.04 16 28 O -0.48 -10.20 14.90 -13.80 -0.21 -10.41 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 30 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.39 6.52 8.21 -40.82 -0.34 6.19 16 34 H 0.09 1.01 7.87 -51.93 -0.41 0.60 16 35 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.13 2.22 7.78 -52.48 -0.41 1.81 16 41 H 0.09 1.15 7.91 -51.93 -0.41 0.74 16 42 H 0.10 0.78 7.90 -51.93 -0.41 0.37 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -35.18 383.49 -9.54 -44.72 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.28 Total: 8.60 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.36 Total: -3.24 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.24 Total: -47.10 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.41 Total: -24.01 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.18 -9.54 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602087675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.138 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds