Wall clock time and date at job start Tue Mar 31 2020 15:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46916 * 2 1 4 4 C 1.50698 * 109.47225 * 119.99313 * 2 1 3 5 5 H 1.08008 * 119.99858 * 120.00034 * 4 2 1 6 6 C 1.37877 * 120.00228 * 300.00275 * 4 2 1 7 7 N 1.31516 * 119.99981 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99977 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47040 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46839 * 119.99739 * 8 6 4 11 11 H 1.48501 * 109.47178 * 239.99825 * 8 6 4 12 12 N 1.46492 * 109.46980 * 239.99705 * 2 1 3 13 13 C 1.34775 * 120.00288 * 85.00309 * 12 2 1 14 14 O 1.21279 * 119.99861 * 354.97370 * 13 12 2 15 15 C 1.50705 * 120.00102 * 174.98188 * 13 12 2 16 16 C 1.52995 * 110.43413 * 66.00033 * 15 13 12 17 17 C 1.50690 * 109.47739 * 61.95626 * 16 15 13 18 18 C 1.38230 * 120.00319 * 93.00571 * 17 16 15 19 19 C 1.38240 * 120.00204 * 180.27931 * 18 17 16 20 20 C 1.38232 * 119.99939 * 359.46881 * 19 18 17 21 21 C 1.38237 * 119.99803 * 0.55964 * 20 19 18 22 22 C 1.38231 * 119.99934 * 359.69158 * 21 20 19 23 23 C 1.54626 * 110.48322 * 303.45453 * 15 13 12 24 24 C 1.54484 * 101.76101 * 216.39376 * 23 15 13 25 25 N 1.46762 * 105.47704 * 25.41884 * 24 23 15 26 26 C 1.46493 * 124.35125 * 162.98158 * 25 24 23 27 27 C 1.34425 * 111.29877 * 342.98367 * 25 24 23 28 28 O 1.21277 * 124.93828 * 180.44793 * 27 25 24 29 29 H 1.09001 * 109.47025 * 300.00223 * 1 2 3 30 30 H 1.08999 * 109.47384 * 60.00419 * 1 2 3 31 31 H 1.09002 * 109.46926 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99952 * 180.02562 * 7 6 4 33 33 H 0.96999 * 120.00189 * 264.99536 * 12 2 1 34 34 H 1.09005 * 109.47235 * 301.95073 * 16 15 13 35 35 H 1.09004 * 109.47159 * 181.95883 * 16 15 13 36 36 H 1.07998 * 120.00287 * 0.02562 * 18 17 16 37 37 H 1.07996 * 120.00200 * 179.73168 * 19 18 17 38 38 H 1.08001 * 120.00659 * 180.27835 * 20 19 18 39 39 H 1.08002 * 120.00028 * 179.71862 * 21 20 19 40 40 H 1.08007 * 119.99996 * 180.02562 * 22 21 20 41 41 H 1.09000 * 110.96910 * 334.50992 * 23 15 13 42 42 H 1.08999 * 110.96856 * 98.27608 * 23 15 13 43 43 H 1.09002 * 110.24424 * 144.42290 * 24 23 15 44 44 H 1.09003 * 110.24644 * 266.41387 * 24 23 15 45 45 H 1.09004 * 109.46972 * 90.00064 * 26 25 24 46 46 H 1.08999 * 109.47489 * 210.00196 * 26 25 24 47 47 H 1.09002 * 109.47468 * 330.00415 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2391 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3214 -1.1200 4.0081 9 1 3.1465 -2.2866 3.6040 10 1 3.1467 -0.1869 4.8164 11 1 1.1661 -1.5863 4.8163 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.7736 1.1328 -2.4359 15 6 2.7549 -0.6972 -3.5575 16 6 1.8542 -1.8357 -4.0404 17 6 0.5216 -1.2759 -4.4663 18 6 0.3061 -0.9339 -5.7882 19 6 -0.9146 -0.4150 -6.1778 20 6 -1.9234 -0.2483 -5.2475 21 6 -1.7077 -0.5897 -3.9255 22 6 -0.4854 -1.1038 -3.5349 23 6 4.1669 -1.2298 -3.2205 24 6 4.9202 -0.9861 -4.5470 25 7 4.2114 0.1193 -5.2025 26 6 4.7637 0.9223 -6.2962 27 6 2.9903 0.3002 -4.6703 28 8 2.1932 1.1402 -5.0306 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7087 1.1615 3.4843 33 1 2.2490 -1.6318 -1.1525 34 1 1.7061 -2.5503 -3.2307 35 1 2.3246 -2.3374 -4.8861 36 1 1.0927 -1.0683 -6.5159 37 1 -1.0815 -0.1438 -7.2097 38 1 -2.8785 0.1529 -5.5527 39 1 -2.4944 -0.4553 -3.1978 40 1 -0.3170 -1.3710 -2.5021 41 1 4.6151 -0.6594 -2.4069 42 1 4.1357 -2.2923 -2.9792 43 1 5.9544 -0.7054 -4.3474 44 1 4.8848 -1.8794 -5.1706 45 1 4.5054 0.4631 -7.2505 46 1 4.3484 1.9292 -6.2534 47 1 5.8482 0.9722 -6.1988 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602087675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:07 Heat of formation + Delta-G solvation = -63.309200 kcal Electronic energy + Delta-G solvation = -29949.097209 eV Core-core repulsion = 26095.780145 eV Total energy + Delta-G solvation = -3853.317064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.34938 -39.93356 -39.76709 -37.47932 -36.65351 -35.43563 -34.15338 -32.57080 -31.74729 -30.86280 -29.19365 -27.79155 -27.32887 -26.34432 -24.03011 -23.41777 -22.64522 -22.30956 -21.22782 -20.27111 -18.84726 -17.89811 -17.67235 -17.21475 -17.12365 -16.79681 -16.40641 -16.05694 -15.99839 -15.76822 -15.33869 -14.86932 -14.77528 -14.48915 -14.33097 -14.27039 -13.95497 -13.69170 -13.51148 -13.50340 -13.31558 -13.14339 -12.98225 -12.96209 -12.87389 -12.79712 -12.64673 -12.31000 -12.24334 -12.08576 -11.86146 -11.69004 -11.08086 -10.71515 -10.62971 -10.48023 -9.77475 -9.70675 -9.67608 -9.49038 -8.14833 -6.32728 0.46258 0.55232 1.46485 1.46886 1.54004 1.59736 1.86042 2.06344 2.39082 2.67671 2.87345 3.15965 3.18954 3.46423 3.85625 3.86982 3.95842 3.97732 4.14525 4.18703 4.25613 4.40739 4.43910 4.47452 4.62324 4.66519 4.71983 4.74686 4.78596 4.83373 4.87948 4.94946 4.99846 5.09255 5.12507 5.16894 5.19569 5.45308 5.57717 5.62669 5.64259 5.67054 5.69739 5.70322 5.93615 6.10999 6.11920 6.16728 6.76093 6.98850 7.27193 7.35710 7.61292 8.91762 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004485 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.804061 B = 6241.911385 C = 7700.346241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.278 3.722 3 H -0.013 1.013 4 C -0.539 4.539 5 H 0.081 0.919 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.973 3.027 9 H -0.253 1.253 10 H -0.287 1.287 11 H -0.282 1.282 12 N -0.696 5.696 13 C 0.521 3.479 14 O -0.585 6.585 15 C -0.107 4.107 16 C -0.053 4.053 17 C -0.096 4.096 18 C -0.102 4.102 19 C -0.130 4.130 20 C -0.129 4.129 21 C -0.140 4.140 22 C -0.122 4.122 23 C -0.124 4.124 24 C 0.105 3.895 25 N -0.629 5.629 26 C 0.095 3.905 27 C 0.524 3.476 28 O -0.540 6.540 29 H 0.061 0.939 30 H 0.005 0.995 31 H 0.041 0.959 32 H 0.263 0.737 33 H 0.405 0.595 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.142 0.858 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.045 0.955 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -11.908 -18.185 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.175 3.825 3 H 0.005 0.995 4 C -0.577 4.577 5 H 0.099 0.901 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.798 3.202 9 H -0.176 1.176 10 H -0.213 1.213 11 H -0.208 1.208 12 N -0.346 5.346 13 C 0.307 3.693 14 O -0.465 6.465 15 C -0.114 4.114 16 C -0.090 4.090 17 C -0.096 4.096 18 C -0.120 4.120 19 C -0.148 4.148 20 C -0.147 4.147 21 C -0.159 4.159 22 C -0.140 4.140 23 C -0.161 4.161 24 C -0.016 4.016 25 N -0.364 5.364 26 C -0.046 4.046 27 C 0.309 3.691 28 O -0.416 6.416 29 H 0.080 0.920 30 H 0.024 0.976 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.241 0.759 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.138 0.862 40 H 0.127 0.873 41 H 0.092 0.908 42 H 0.160 0.840 43 H 0.122 0.878 44 H 0.130 0.870 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.365 -10.473 -18.354 22.379 hybrid contribution -0.262 0.381 1.305 1.385 sum 7.103 -10.092 -17.049 21.047 Atomic orbital electron populations 1.21856 0.98666 0.99197 0.99006 1.18243 0.90849 0.91403 0.82013 0.99460 1.21575 1.32302 1.13491 0.90339 0.90106 1.25841 0.94902 0.95540 1.02494 1.70094 1.37261 1.24237 1.24403 0.85279 0.78000 0.78623 0.78309 1.17631 1.21335 1.20818 1.46082 1.65569 1.13932 1.09025 1.20369 0.78304 0.86226 0.84443 1.90727 1.50991 1.20460 1.84325 1.21667 0.99580 0.97255 0.92888 1.20646 0.90113 0.94151 1.04130 1.19904 0.95689 1.00144 0.93837 1.21058 0.97250 0.98309 0.95348 1.21360 0.93586 0.99436 1.00435 1.21356 1.00259 1.00055 0.93032 1.21305 0.97690 0.99856 0.97004 1.21180 0.94152 0.99730 0.98950 1.22946 0.89235 1.05413 0.98522 1.22414 0.97050 0.89890 0.92247 1.48267 1.15805 1.35470 1.36837 1.21662 1.00250 0.94300 0.88372 1.20354 0.82135 0.83561 0.83036 1.90709 1.49645 1.36537 1.64693 0.91981 0.97628 0.93947 0.92761 0.75927 0.87396 0.86110 0.85594 0.84214 0.84355 0.86216 0.87341 0.90822 0.83973 0.87762 0.86997 0.91018 0.93593 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.69 9.13 71.98 0.66 -6.03 16 2 C 0.28 14.48 2.52 44.25 0.11 14.59 16 3 H -0.01 -0.79 7.65 -2.39 -0.02 -0.81 16 4 C -0.54 -27.77 8.73 25.60 0.22 -27.54 16 5 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 8 Si 0.97 41.28 29.54 68.60 2.03 43.30 16 9 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 10 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.70 -28.21 4.93 -446.12 -2.20 -30.41 16 13 C 0.52 21.62 4.79 87.66 0.42 22.04 16 14 O -0.59 -32.04 15.05 15.49 0.23 -31.80 16 15 C -0.11 -3.07 0.48 -52.93 -0.03 -3.09 16 16 C -0.05 -1.22 4.40 29.84 0.13 -1.09 16 17 C -0.10 -2.95 4.24 -19.87 -0.08 -3.03 16 18 C -0.10 -2.97 8.05 22.27 0.18 -2.79 16 19 C -0.13 -3.72 10.05 22.27 0.22 -3.49 16 20 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 21 C -0.14 -4.78 10.05 22.27 0.22 -4.56 16 22 C -0.12 -4.32 8.70 22.27 0.19 -4.12 16 23 C -0.12 -2.23 6.03 31.65 0.19 -2.04 16 24 C 0.11 1.36 7.35 86.83 0.64 2.00 16 25 N -0.63 -14.01 3.33 -842.89 -2.81 -16.82 16 26 C 0.10 1.66 10.96 127.77 1.40 3.06 16 27 C 0.52 17.27 5.81 87.90 0.51 17.78 16 28 O -0.54 -23.60 14.90 15.49 0.23 -23.37 16 29 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 30 H 0.00 0.25 8.10 -2.39 -0.02 0.23 16 31 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.41 13.12 8.21 -92.71 -0.76 12.36 16 34 H 0.11 2.07 7.87 -2.38 -0.02 2.05 16 35 H 0.12 1.84 8.07 -2.39 -0.02 1.82 16 36 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 37 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 39 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 40 H 0.11 4.05 7.78 -2.91 -0.02 4.03 16 41 H 0.07 1.64 7.91 -2.39 -0.02 1.63 16 42 H 0.14 1.36 7.90 -2.39 -0.02 1.35 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 46 H 0.05 1.07 7.93 -2.39 -0.02 1.05 16 47 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -84.98 383.49 3.60 -81.38 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.21 Total: 31.78 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.67 Total: -0.88 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -4.77 Total: -100.42 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: 0.46 Total: -55.17 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -84.98 3.60 -81.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602087675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.072 kcal (2) G-P(sol) polarization free energy of solvation -84.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds