Wall clock time and date at job start Tue Mar 31 2020 15:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47283 * 2 1 4 4 C 1.50707 * 109.46885 * 240.00258 * 2 1 3 5 5 H 1.07999 * 119.99898 * 239.99543 * 4 2 1 6 6 C 1.37874 * 119.99998 * 60.00241 * 4 2 1 7 7 N 1.31519 * 119.99677 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00113 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47364 * 89.99609 * 8 6 4 10 10 H 1.48500 * 109.47464 * 210.00056 * 8 6 4 11 11 H 1.48499 * 109.47127 * 329.99594 * 8 6 4 12 12 N 1.46900 * 109.47219 * 120.00596 * 2 1 3 13 13 C 1.46903 * 110.99662 * 274.99878 * 12 2 1 14 14 H 1.08997 * 109.47405 * 35.00003 * 13 12 2 15 15 C 1.53001 * 109.46943 * 274.99872 * 13 12 2 16 16 C 1.50695 * 109.47069 * 155.00341 * 13 12 2 17 17 O 1.21288 * 120.00133 * 359.97438 * 16 13 12 18 18 N 1.34778 * 120.00106 * 179.97438 * 16 13 12 19 19 C 1.46501 * 120.00128 * 179.97438 * 18 16 13 20 20 H 1.08999 * 109.47113 * 34.99700 * 19 18 16 21 21 C 1.53001 * 109.47156 * 275.00108 * 19 18 16 22 22 C 1.50701 * 109.47279 * 154.99690 * 19 18 16 23 23 C 1.33996 * 124.92531 * 220.01434 * 22 19 18 24 24 C 1.46782 * 106.18401 * 179.97438 * 23 22 19 25 25 C 1.39410 * 134.36724 * 180.02562 * 24 23 22 26 26 C 1.36731 * 119.71327 * 179.97438 * 25 24 23 27 27 C 1.38746 * 120.42263 * 0.02562 * 26 25 24 28 28 C 1.37844 * 120.68365 * 0.02841 * 27 26 25 29 29 C 1.38945 * 119.81906 * 359.94696 * 28 27 26 30 30 O 1.34455 * 124.91793 * 39.97707 * 22 19 18 31 31 H 1.09007 * 109.47072 * 299.99734 * 1 2 3 32 32 H 1.09001 * 109.47621 * 59.99502 * 1 2 3 33 33 H 1.09001 * 109.47283 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99696 * 180.02562 * 7 6 4 35 35 H 1.00890 * 111.00539 * 38.95013 * 12 2 1 36 36 H 1.08996 * 109.47299 * 180.02562 * 15 13 12 37 37 H 1.09002 * 109.47325 * 299.99824 * 15 13 12 38 38 H 1.08997 * 109.47400 * 60.00049 * 15 13 12 39 39 H 0.96997 * 119.99922 * 359.97438 * 18 16 13 40 40 H 1.08999 * 109.46777 * 299.99798 * 21 19 18 41 41 H 1.08997 * 109.47390 * 60.00024 * 21 19 18 42 42 H 1.09004 * 109.47175 * 180.02562 * 21 19 18 43 43 H 1.07999 * 126.90751 * 359.93253 * 23 22 19 44 44 H 1.08002 * 120.14224 * 359.96668 * 25 24 23 45 45 H 1.08001 * 119.79390 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.65894 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.09356 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3211 -1.1201 -4.0080 9 1 1.3425 -2.1614 -4.4119 10 1 2.4864 -0.1412 -5.1123 11 1 3.6291 -1.7582 -3.7124 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2224 2.3469 14 1 1.2576 0.9328 2.2907 15 6 3.4111 0.9807 2.3223 16 6 1.9787 -0.5678 3.6258 17 8 1.8633 -1.7745 3.5854 18 7 2.0142 0.0663 4.8145 19 6 1.9127 -0.7020 6.0579 20 1 2.4149 -1.6614 5.9341 21 6 0.4386 -0.9374 6.3931 22 6 2.5661 0.0662 7.1777 23 6 3.3240 -0.4767 8.1402 24 6 3.7446 0.6328 9.0043 25 6 4.5284 0.7306 10.1531 26 6 4.7328 1.9523 10.7320 27 6 4.1651 3.0934 10.1838 28 6 3.3863 3.0160 9.0490 29 6 3.1664 1.7844 8.4446 30 8 2.4736 1.3957 7.3554 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 0.7081 1.1611 -3.4843 35 1 1.4496 -1.4980 1.4100 36 1 3.4580 1.6593 3.1740 37 1 4.2360 0.2704 2.3785 38 1 3.4863 1.5523 1.3973 39 1 2.1068 1.0313 4.8469 40 1 -0.0636 0.0221 6.5168 41 1 -0.0340 -1.4930 5.5831 42 1 0.3631 -1.5086 7.3184 43 1 3.5744 -1.5207 8.2571 44 1 4.9721 -0.1548 10.5839 45 1 5.3395 2.0296 11.6222 46 1 4.3343 4.0521 10.6515 47 1 2.9486 3.9103 8.6306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:54 Heat of formation + Delta-G solvation = -8.173632 kcal Electronic energy + Delta-G solvation = -27540.006004 eV Core-core repulsion = 23689.079797 eV Total energy + Delta-G solvation = -3850.926207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.83713 -39.85444 -38.26928 -36.34323 -35.41207 -33.27713 -32.91376 -31.42426 -30.76569 -30.02248 -28.80300 -26.96753 -25.17243 -24.83371 -23.45439 -23.02180 -21.88063 -21.10680 -20.28298 -19.56603 -17.87964 -17.67506 -17.02914 -16.52237 -16.07576 -16.00393 -15.34290 -15.29515 -14.66469 -14.47206 -14.27452 -14.05623 -13.90457 -13.59675 -13.38267 -13.02657 -12.70134 -12.66973 -12.49452 -12.36427 -12.17473 -11.88089 -11.80863 -11.73009 -11.48157 -11.30736 -11.28554 -10.91569 -10.71234 -10.48996 -10.46728 -10.10487 -9.94626 -9.47994 -9.22751 -8.97925 -8.95066 -8.50327 -8.33683 -7.26929 -5.96536 -3.98834 0.53208 1.00924 1.95273 2.27170 2.82154 3.11397 3.35610 3.36893 3.41586 3.47174 3.94021 4.30046 4.46913 4.58134 4.69680 4.72613 4.84415 4.90310 4.95739 5.02978 5.10263 5.17400 5.30144 5.35447 5.42953 5.49327 5.60232 5.62101 5.72878 5.80600 5.89446 5.96404 6.05315 6.07567 6.07767 6.21886 6.30191 6.38441 6.65642 6.67785 6.84395 6.85442 7.09740 7.29571 7.49010 7.76224 7.91408 8.26967 8.32273 8.56495 8.63331 9.08870 9.66224 11.10769 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.002130 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.531708 B =13141.180767 C =13465.974960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.211 3.789 3 H 0.036 0.964 4 C -0.491 4.491 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.667 5.667 13 C 0.069 3.931 14 H 0.062 0.938 15 C -0.132 4.132 16 C 0.520 3.480 17 O -0.528 6.528 18 N -0.733 5.733 19 C 0.223 3.777 20 H 0.120 0.880 21 C -0.164 4.164 22 C 0.033 3.967 23 C -0.195 4.195 24 C -0.129 4.129 25 C -0.071 4.071 26 C -0.137 4.137 27 C -0.095 4.095 28 C -0.106 4.106 29 C 0.054 3.946 30 O -0.188 6.188 31 H 0.003 0.997 32 H 0.090 0.910 33 H 0.029 0.971 34 H 0.259 0.741 35 H 0.341 0.659 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.405 0.595 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.161 0.839 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.135 0.865 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 4.171 27.851 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.530 4.530 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.301 5.301 13 C -0.045 4.045 14 H 0.080 0.920 15 C -0.190 4.190 16 C 0.308 3.692 17 O -0.402 6.402 18 N -0.387 5.387 19 C 0.118 3.882 20 H 0.137 0.863 21 C -0.222 4.222 22 C -0.015 4.015 23 C -0.214 4.214 24 C -0.130 4.130 25 C -0.089 4.089 26 C -0.155 4.155 27 C -0.113 4.113 28 C -0.124 4.124 29 C 0.007 3.993 30 O -0.090 6.090 31 H 0.022 0.978 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.161 0.839 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.240 0.760 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.179 0.821 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.153 0.847 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.372 3.644 27.318 27.904 hybrid contribution -0.628 0.130 -0.491 0.808 sum 3.744 3.774 26.827 27.349 Atomic orbital electron populations 1.22465 1.00771 0.99384 1.00381 1.19265 0.89510 0.94507 0.86349 0.94615 1.21131 1.30091 1.12385 0.89402 0.91816 1.24947 0.95404 0.95234 0.99042 1.69884 1.37426 1.23247 1.23311 0.86485 0.79275 0.79203 0.82362 1.20862 1.21436 1.19858 1.60858 1.59177 1.08379 1.01642 1.21458 0.99048 0.95179 0.88788 0.92001 1.21728 0.96145 0.99293 1.01816 1.21186 0.74328 0.88634 0.85090 1.90668 1.48163 1.14385 1.87025 1.46113 1.76666 1.11204 1.04720 1.19551 0.96245 0.93667 0.78721 0.86260 1.22241 0.94222 1.02885 1.02854 1.22462 0.99680 0.80739 0.98613 1.22240 1.02968 0.99676 0.96533 1.19941 1.01982 0.92854 0.98198 1.20306 0.96772 0.98287 0.93532 1.20793 1.01512 0.92239 1.00955 1.20947 0.96462 0.99114 0.94804 1.19986 1.01820 0.93941 0.96659 1.19644 0.96065 0.95624 0.87987 1.83924 1.60877 1.23360 1.40838 0.97838 0.89109 0.95190 0.93115 0.83908 0.93496 0.91868 0.90826 0.75984 0.91818 0.90425 0.91100 0.82131 0.85469 0.85331 0.84745 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.92 37.16 0.33 -3.81 16 2 C 0.21 5.30 2.38 -68.86 -0.16 5.14 16 3 H 0.04 0.96 7.11 -51.93 -0.37 0.59 16 4 C -0.49 -13.73 8.84 -34.44 -0.30 -14.03 16 5 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.65 11.32 55.43 0.63 -25.02 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 12 N -0.67 -14.71 5.92 -102.17 -0.60 -15.31 16 13 C 0.07 1.23 2.84 -68.86 -0.20 1.03 16 14 H 0.06 1.09 7.11 -51.93 -0.37 0.72 16 15 C -0.13 -2.10 9.29 37.16 0.35 -1.75 16 16 C 0.52 8.46 7.15 -10.99 -0.08 8.38 16 17 O -0.53 -10.12 15.31 5.55 0.08 -10.04 16 18 N -0.73 -9.16 4.96 -54.93 -0.27 -9.43 16 19 C 0.22 2.46 3.01 -69.08 -0.21 2.25 16 20 H 0.12 1.37 7.55 -51.93 -0.39 0.98 16 21 C -0.16 -1.64 9.47 37.16 0.35 -1.29 16 22 C 0.03 0.35 6.05 -35.80 -0.22 0.14 16 23 C -0.19 -1.92 10.99 -37.62 -0.41 -2.34 16 24 C -0.13 -1.32 6.40 -105.16 -0.67 -1.99 16 25 C -0.07 -0.58 10.05 -39.69 -0.40 -0.98 16 26 C -0.14 -0.94 9.98 -39.94 -0.40 -1.34 16 27 C -0.10 -0.65 10.01 -39.54 -0.40 -1.05 16 28 C -0.11 -0.90 10.07 -39.46 -0.40 -1.30 16 29 C 0.05 0.58 7.42 -38.47 -0.29 0.30 16 30 O -0.19 -2.14 10.19 3.89 0.04 -2.10 16 31 H 0.00 0.06 7.43 -51.92 -0.39 -0.33 16 32 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 33 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.34 7.73 7.19 -39.30 -0.28 7.45 16 36 H 0.05 0.59 7.56 -51.93 -0.39 0.19 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.29 7.43 -51.93 -0.39 0.90 16 39 H 0.41 4.49 7.69 -40.82 -0.31 4.17 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 46 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 47 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -31.63 388.97 -9.46 -41.09 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.98 Total: 9.46 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -3.20 Total: -11.23 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.25 Total: -49.77 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.12 Total: -12.14 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.63 -9.46 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.919 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds