Wall clock time and date at job start Tue Mar 31 2020 15:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47283 * 2 1 4 4 C 1.50707 * 109.46885 * 240.00258 * 2 1 3 5 5 H 1.07999 * 119.99898 * 239.99543 * 4 2 1 6 6 C 1.37874 * 119.99998 * 60.00241 * 4 2 1 7 7 N 1.31519 * 119.99677 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00113 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47364 * 89.99609 * 8 6 4 10 10 H 1.48500 * 109.47464 * 210.00056 * 8 6 4 11 11 H 1.48499 * 109.47127 * 329.99594 * 8 6 4 12 12 N 1.46900 * 109.47219 * 120.00596 * 2 1 3 13 13 C 1.46903 * 110.99662 * 274.99878 * 12 2 1 14 14 H 1.08997 * 109.47405 * 35.00003 * 13 12 2 15 15 C 1.53001 * 109.46943 * 274.99872 * 13 12 2 16 16 C 1.50695 * 109.47069 * 155.00341 * 13 12 2 17 17 O 1.21288 * 120.00133 * 359.97438 * 16 13 12 18 18 N 1.34778 * 120.00106 * 179.97438 * 16 13 12 19 19 C 1.46501 * 120.00128 * 179.97438 * 18 16 13 20 20 H 1.08999 * 109.47113 * 34.99700 * 19 18 16 21 21 C 1.53001 * 109.47156 * 275.00108 * 19 18 16 22 22 C 1.50701 * 109.47279 * 154.99690 * 19 18 16 23 23 C 1.33996 * 124.92531 * 220.01434 * 22 19 18 24 24 C 1.46782 * 106.18401 * 179.97438 * 23 22 19 25 25 C 1.39410 * 134.36724 * 180.02562 * 24 23 22 26 26 C 1.36731 * 119.71327 * 179.97438 * 25 24 23 27 27 C 1.38746 * 120.42263 * 0.02562 * 26 25 24 28 28 C 1.37844 * 120.68365 * 0.02841 * 27 26 25 29 29 C 1.38945 * 119.81906 * 359.94696 * 28 27 26 30 30 O 1.34455 * 124.91793 * 39.97707 * 22 19 18 31 31 H 1.09007 * 109.47072 * 299.99734 * 1 2 3 32 32 H 1.09001 * 109.47621 * 59.99502 * 1 2 3 33 33 H 1.09001 * 109.47283 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99696 * 180.02562 * 7 6 4 35 35 H 1.00890 * 111.00539 * 38.95013 * 12 2 1 36 36 H 1.08996 * 109.47299 * 180.02562 * 15 13 12 37 37 H 1.09002 * 109.47325 * 299.99824 * 15 13 12 38 38 H 1.08997 * 109.47400 * 60.00049 * 15 13 12 39 39 H 0.96997 * 119.99922 * 359.97438 * 18 16 13 40 40 H 1.08999 * 109.46777 * 299.99798 * 21 19 18 41 41 H 1.08997 * 109.47390 * 60.00024 * 21 19 18 42 42 H 1.09004 * 109.47175 * 180.02562 * 21 19 18 43 43 H 1.07999 * 126.90751 * 359.93253 * 23 22 19 44 44 H 1.08002 * 120.14224 * 359.96668 * 25 24 23 45 45 H 1.08001 * 119.79390 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.65894 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.09356 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3211 -1.1201 -4.0080 9 1 1.3425 -2.1614 -4.4119 10 1 2.4864 -0.1412 -5.1123 11 1 3.6291 -1.7582 -3.7124 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2224 2.3469 14 1 1.2576 0.9328 2.2907 15 6 3.4111 0.9807 2.3223 16 6 1.9787 -0.5678 3.6258 17 8 1.8633 -1.7745 3.5854 18 7 2.0142 0.0663 4.8145 19 6 1.9127 -0.7020 6.0579 20 1 2.4149 -1.6614 5.9341 21 6 0.4386 -0.9374 6.3931 22 6 2.5661 0.0662 7.1777 23 6 3.3240 -0.4767 8.1402 24 6 3.7446 0.6328 9.0043 25 6 4.5284 0.7306 10.1531 26 6 4.7328 1.9523 10.7320 27 6 4.1651 3.0934 10.1838 28 6 3.3863 3.0160 9.0490 29 6 3.1664 1.7844 8.4446 30 8 2.4736 1.3957 7.3554 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 0.7081 1.1611 -3.4843 35 1 1.4496 -1.4980 1.4100 36 1 3.4580 1.6593 3.1740 37 1 4.2360 0.2704 2.3785 38 1 3.4863 1.5523 1.3973 39 1 2.1068 1.0313 4.8469 40 1 -0.0636 0.0221 6.5168 41 1 -0.0340 -1.4930 5.5831 42 1 0.3631 -1.5086 7.3184 43 1 3.5744 -1.5207 8.2571 44 1 4.9721 -0.1548 10.5839 45 1 5.3395 2.0296 11.6222 46 1 4.3343 4.0521 10.6515 47 1 2.9486 3.9103 8.6306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:53 Heat of formation + Delta-G solvation = -27.850857 kcal Electronic energy + Delta-G solvation = -27540.859273 eV Core-core repulsion = 23689.079797 eV Total energy + Delta-G solvation = -3851.779475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.55072 -41.14075 -38.90745 -37.89379 -36.65354 -34.91212 -33.93625 -32.76135 -31.43142 -31.35447 -29.53917 -28.67868 -27.24878 -25.88033 -24.51828 -23.78290 -22.68679 -22.07674 -21.73950 -21.02645 -19.15526 -18.35063 -18.21153 -17.76506 -17.28036 -16.95349 -16.72537 -16.58884 -16.20219 -15.54815 -15.29819 -15.00657 -14.90842 -14.63538 -14.54739 -14.23460 -14.06085 -13.73894 -13.70042 -13.33229 -13.22203 -13.19015 -13.08837 -12.91707 -12.81540 -12.77637 -12.60735 -12.52634 -12.30845 -12.10443 -11.91604 -11.88424 -11.16971 -11.07718 -10.79486 -10.47115 -10.34351 -9.61047 -9.17486 -9.04355 -8.09376 -6.19078 -0.10947 0.38835 1.21945 1.43567 1.44092 1.46892 1.55408 1.59992 2.01096 2.45571 2.76929 3.19161 3.19411 3.55816 3.67669 3.68399 3.95124 4.02576 4.06473 4.12266 4.17812 4.24133 4.30428 4.38764 4.51565 4.61503 4.67456 4.68631 4.77315 4.77988 4.86725 4.89094 4.91056 5.09661 5.10855 5.20960 5.23460 5.30170 5.32957 5.39175 5.44174 5.51890 5.69545 5.73530 5.81234 6.15124 6.23910 6.33933 6.62342 6.76261 6.93344 7.08758 7.50036 8.96369 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.002130 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.531708 B =13141.180767 C =13465.974960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.218 3.782 3 H 0.016 0.984 4 C -0.514 4.514 5 H 0.050 0.950 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.675 5.675 13 C 0.065 3.935 14 H 0.068 0.932 15 C -0.124 4.124 16 C 0.528 3.472 17 O -0.560 6.560 18 N -0.716 5.716 19 C 0.226 3.774 20 H 0.115 0.885 21 C -0.158 4.158 22 C 0.018 3.982 23 C -0.191 4.191 24 C -0.153 4.153 25 C -0.080 4.080 26 C -0.136 4.136 27 C -0.089 4.089 28 C -0.121 4.121 29 C 0.028 3.972 30 O -0.202 6.202 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.335 0.665 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.414 0.586 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.178 0.822 44 H 0.145 0.855 45 H 0.158 0.842 46 H 0.165 0.835 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 4.821 30.033 30.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.110 3.890 3 H 0.034 0.966 4 C -0.553 4.553 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.308 5.308 13 C -0.049 4.049 14 H 0.085 0.915 15 C -0.182 4.182 16 C 0.315 3.685 17 O -0.438 6.438 18 N -0.369 5.369 19 C 0.122 3.878 20 H 0.133 0.867 21 C -0.216 4.216 22 C -0.030 4.030 23 C -0.211 4.211 24 C -0.154 4.154 25 C -0.098 4.098 26 C -0.154 4.154 27 C -0.107 4.107 28 C -0.140 4.140 29 C -0.019 4.019 30 O -0.104 6.104 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.155 0.845 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.250 0.750 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.196 0.804 44 H 0.163 0.837 45 H 0.176 0.824 46 H 0.183 0.817 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.278 4.325 29.541 30.319 hybrid contribution -0.855 0.016 -0.992 1.310 sum 4.423 4.341 28.549 29.214 Atomic orbital electron populations 1.22282 1.00225 0.99032 1.00255 1.19013 0.89781 0.93241 0.86967 0.96562 1.21392 1.30421 1.12372 0.91066 0.93152 1.25671 0.95527 0.95919 1.01705 1.69991 1.37914 1.24094 1.23994 0.85530 0.78691 0.78239 0.78973 1.20319 1.20706 1.19756 1.60725 1.58752 1.08872 1.02451 1.21538 1.00204 0.94758 0.88355 0.91460 1.21676 0.94744 0.99287 1.02544 1.20780 0.74319 0.87915 0.85530 1.90658 1.50096 1.15576 1.87446 1.45935 1.74966 1.11696 1.04308 1.19581 0.96986 0.93319 0.77952 0.86691 1.22187 0.93260 1.03042 1.03118 1.22286 1.00860 0.80843 0.98994 1.22544 1.01944 1.00568 0.96023 1.20232 1.03119 0.92756 0.99310 1.20648 0.96428 0.99758 0.92990 1.21219 1.00994 0.91646 1.01493 1.21398 0.94859 1.00589 0.93808 1.20341 1.02514 0.93745 0.97370 1.20099 0.96792 0.96770 0.88254 1.83871 1.61486 1.23548 1.41504 0.95556 0.91485 0.95546 0.92952 0.84508 0.89717 0.92662 0.92640 0.74962 0.91598 0.92035 0.89180 0.80446 0.83702 0.82417 0.81721 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.78 8.92 71.98 0.64 -7.14 16 2 C 0.22 11.19 2.38 44.17 0.11 11.29 16 3 H 0.02 0.90 7.11 -2.39 -0.02 0.88 16 4 C -0.51 -29.26 8.84 25.60 0.23 -29.03 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -53.00 11.32 21.45 0.24 -52.76 16 8 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.67 -30.32 5.92 -477.15 -2.82 -33.15 16 13 C 0.06 2.30 2.84 44.17 0.13 2.43 16 14 H 0.07 2.33 7.11 -2.39 -0.02 2.32 16 15 C -0.12 -3.92 9.29 71.98 0.67 -3.25 16 16 C 0.53 17.05 7.15 87.66 0.63 17.67 16 17 O -0.56 -21.69 15.31 -3.05 -0.05 -21.73 16 18 N -0.72 -17.41 4.96 -446.09 -2.21 -19.62 16 19 C 0.23 4.84 3.01 44.25 0.13 4.98 16 20 H 0.12 2.60 7.55 -2.39 -0.02 2.58 16 21 C -0.16 -3.06 9.47 71.98 0.68 -2.38 16 22 C 0.02 0.37 6.05 24.72 0.15 0.52 16 23 C -0.19 -3.60 10.99 23.54 0.26 -3.34 16 24 C -0.15 -2.96 6.40 -20.21 -0.13 -3.09 16 25 C -0.08 -1.14 10.05 22.20 0.22 -0.92 16 26 C -0.14 -1.45 9.98 22.04 0.22 -1.23 16 27 C -0.09 -0.96 10.01 22.30 0.22 -0.74 16 28 C -0.12 -1.87 10.07 22.35 0.23 -1.65 16 29 C 0.03 0.57 7.42 22.99 0.17 0.74 16 30 O -0.20 -4.48 10.19 -9.00 -0.09 -4.57 16 31 H 0.03 1.12 7.43 -2.38 -0.02 1.10 16 32 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 33 H 0.03 1.26 8.13 -2.39 -0.02 1.24 16 34 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.34 15.56 7.19 -89.70 -0.64 14.91 16 36 H 0.08 1.99 7.56 -2.39 -0.02 1.97 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.95 7.43 -2.39 -0.02 1.93 16 39 H 0.41 8.70 7.69 -92.71 -0.71 7.98 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 45 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 46 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 47 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -69.03 388.97 1.73 -67.30 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.36 Total: 31.77 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 5.00 Total: -14.13 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -4.79 Total: -105.53 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.14 Total: -26.31 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.03 1.73 -67.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.449 kcal (2) G-P(sol) polarization free energy of solvation -69.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds