Wall clock time and date at job start Tue Mar 31 2020 15:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47630 * 2 1 4 4 C 1.50703 * 109.47239 * 239.99450 * 2 1 3 5 5 H 1.07997 * 120.00135 * 239.99903 * 4 2 1 6 6 C 1.37872 * 119.99514 * 60.00284 * 4 2 1 7 7 N 1.31513 * 120.00530 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99783 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47481 * 90.00069 * 8 6 4 10 10 H 1.48500 * 109.47551 * 209.99929 * 8 6 4 11 11 H 1.48500 * 109.47361 * 329.99777 * 8 6 4 12 12 N 1.46903 * 109.46962 * 119.99633 * 2 1 3 13 13 C 1.46897 * 111.00031 * 206.03431 * 12 2 1 14 14 H 1.08994 * 109.47325 * 323.33719 * 13 12 2 15 15 C 1.53003 * 109.46934 * 83.33504 * 13 12 2 16 16 C 1.50700 * 109.47356 * 203.33345 * 13 12 2 17 17 O 1.21282 * 119.99603 * 0.02562 * 16 13 12 18 18 N 1.34779 * 120.00080 * 180.02562 * 16 13 12 19 19 C 1.46495 * 119.99807 * 180.02562 * 18 16 13 20 20 H 1.09002 * 109.47326 * 34.99735 * 19 18 16 21 21 C 1.53002 * 109.47432 * 275.00019 * 19 18 16 22 22 C 1.50707 * 109.47184 * 155.00075 * 19 18 16 23 23 C 1.33997 * 124.92286 * 220.00240 * 22 19 18 24 24 C 1.46778 * 106.18381 * 179.97438 * 23 22 19 25 25 C 1.39404 * 134.37100 * 179.97438 * 24 23 22 26 26 C 1.36738 * 119.72021 * 180.02562 * 25 24 23 27 27 C 1.38743 * 120.41316 * 0.02562 * 26 25 24 28 28 C 1.37842 * 120.68676 * 0.02562 * 27 26 25 29 29 C 1.38939 * 119.81959 * 359.97438 * 28 27 26 30 30 O 1.34448 * 124.91858 * 39.97156 * 22 19 18 31 31 H 1.09000 * 109.46762 * 54.03972 * 1 2 3 32 32 H 1.08997 * 109.47199 * 174.04229 * 1 2 3 33 33 H 1.08999 * 109.46590 * 294.04611 * 1 2 3 34 34 H 0.96999 * 120.00522 * 180.02562 * 7 6 4 35 35 H 1.00903 * 110.99700 * 82.08503 * 12 2 1 36 36 H 1.08998 * 109.47227 * 304.82121 * 15 13 12 37 37 H 1.09005 * 109.47010 * 64.82005 * 15 13 12 38 38 H 1.09000 * 109.47045 * 184.81836 * 15 13 12 39 39 H 0.96990 * 119.99907 * 0.02562 * 18 16 13 40 40 H 1.09004 * 109.46779 * 59.99875 * 21 19 18 41 41 H 1.08999 * 109.47051 * 180.02562 * 21 19 18 42 42 H 1.09002 * 109.46633 * 300.00141 * 21 19 18 43 43 H 1.07999 * 126.90617 * 359.97438 * 23 22 19 44 44 H 1.08001 * 120.13845 * 0.02562 * 25 24 23 45 45 H 1.07993 * 119.79190 * 180.02562 * 26 25 24 46 46 H 1.08005 * 119.65396 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.09314 * 179.70512 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9437 0.8301 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3428 -2.1619 -4.4118 10 1 2.4867 -0.1417 -5.1122 11 1 3.6293 -1.7586 -3.7121 12 7 2.0197 -0.6924 1.1995 13 6 3.3569 -0.2139 1.5746 14 1 3.9354 -0.0089 0.6738 15 6 3.2270 1.0678 2.3999 16 6 4.0570 -1.2689 2.3919 17 8 3.4972 -2.3164 2.6374 18 7 5.3052 -1.0482 2.8502 19 6 5.9859 -2.0740 3.6442 20 1 5.7028 -3.0620 3.2811 21 6 5.5800 -1.9349 5.1128 22 6 7.4775 -1.9003 3.5167 23 6 8.3594 -2.9025 3.4016 24 6 9.6824 -2.2742 3.3050 25 6 10.9834 -2.7568 3.1711 26 6 12.0293 -1.8782 3.1087 27 6 11.8032 -0.5111 3.1783 28 6 10.5239 -0.0155 3.3117 29 6 9.4471 -0.8910 3.3770 30 8 8.1160 -0.7172 3.5014 31 1 -0.3633 0.6035 -0.8318 32 1 -0.3633 -1.0221 -0.1067 33 1 -0.3632 0.4188 0.9385 34 1 0.7091 1.1613 -3.4844 35 1 2.0179 -1.6926 1.0657 36 1 2.6461 1.8021 1.8418 37 1 2.7231 0.8448 3.3405 38 1 4.2191 1.4696 2.6056 39 1 5.7527 -0.2103 2.6542 40 1 4.5011 -2.0606 5.2050 41 1 6.0869 -2.6979 5.7037 42 1 5.8631 -0.9470 5.4760 43 1 8.1407 -3.9600 3.3836 44 1 11.1644 -3.8202 3.1170 45 1 13.0375 -2.2508 3.0046 46 1 12.6383 0.1719 3.1274 47 1 10.3594 1.0504 3.3697 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:58 Heat of formation + Delta-G solvation = -11.406779 kcal Electronic energy + Delta-G solvation = -27723.990749 eV Core-core repulsion = 23872.924342 eV Total energy + Delta-G solvation = -3851.066407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.78680 -39.75510 -38.22004 -36.23401 -35.33241 -33.22783 -32.88283 -31.35630 -30.72044 -30.02740 -28.76486 -27.13040 -25.03538 -24.77306 -23.37687 -22.96670 -21.81230 -21.03294 -20.10675 -19.58598 -17.72851 -17.60302 -16.95340 -16.47641 -16.33141 -15.99215 -15.33203 -14.97760 -14.71852 -14.55844 -14.30076 -14.09032 -13.66982 -13.48639 -13.34086 -13.12483 -12.83326 -12.57024 -12.34412 -12.29996 -12.11981 -11.88860 -11.80837 -11.64287 -11.30105 -11.26021 -11.17244 -10.96568 -10.75898 -10.41991 -10.28859 -10.10409 -9.97574 -9.34099 -9.16078 -9.06898 -8.92669 -8.45321 -8.41380 -7.32725 -6.01196 -4.13089 0.57995 1.05505 2.00535 2.32309 2.92536 3.19767 3.27363 3.34225 3.37461 3.41503 3.99388 4.34762 4.39662 4.62376 4.74977 4.77400 4.89178 4.95267 5.00914 5.10707 5.15149 5.21540 5.29172 5.34937 5.48091 5.53858 5.66211 5.69472 5.85249 5.88732 5.93852 6.00904 6.10088 6.11516 6.12119 6.27991 6.39136 6.44949 6.63276 6.89445 6.91121 7.16784 7.30715 7.44836 7.58954 7.75516 8.06813 8.15551 8.28245 8.41808 8.65977 8.99683 9.54940 11.00365 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.002704 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.782563 B =10351.487130 C =11437.770250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.207 3.793 3 H 0.034 0.966 4 C -0.547 4.547 5 H 0.053 0.947 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.889 3.111 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.674 5.674 13 C 0.073 3.927 14 H 0.074 0.926 15 C -0.131 4.131 16 C 0.522 3.478 17 O -0.530 6.530 18 N -0.733 5.733 19 C 0.223 3.777 20 H 0.119 0.881 21 C -0.162 4.162 22 C 0.034 3.966 23 C -0.196 4.196 24 C -0.128 4.128 25 C -0.071 4.071 26 C -0.137 4.137 27 C -0.096 4.096 28 C -0.105 4.105 29 C 0.054 3.946 30 O -0.188 6.188 31 H 0.078 0.922 32 H 0.026 0.974 33 H 0.015 0.985 34 H 0.261 0.739 35 H 0.343 0.657 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.405 0.595 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.161 0.839 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.135 0.865 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.568 -2.464 14.759 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.100 3.900 3 H 0.052 0.948 4 C -0.587 4.587 5 H 0.071 0.929 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.308 5.308 13 C -0.041 4.041 14 H 0.091 0.909 15 C -0.189 4.189 16 C 0.310 3.690 17 O -0.405 6.405 18 N -0.387 5.387 19 C 0.118 3.882 20 H 0.136 0.864 21 C -0.221 4.221 22 C -0.014 4.014 23 C -0.215 4.215 24 C -0.129 4.129 25 C -0.089 4.089 26 C -0.155 4.155 27 C -0.114 4.114 28 C -0.124 4.124 29 C 0.007 3.993 30 O -0.090 6.090 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.240 0.760 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.178 0.822 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.152 0.848 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 19.588 -2.432 15.246 24.941 hybrid contribution 1.246 -0.646 -1.827 2.304 sum 20.834 -3.078 13.419 24.972 Atomic orbital electron populations 1.21653 0.97457 0.99870 0.99061 1.19225 0.92620 0.94037 0.84138 0.94776 1.21862 1.32069 1.12781 0.91952 0.92882 1.24914 0.94785 0.94800 0.98899 1.69893 1.36348 1.22664 1.23485 0.86651 0.79272 0.79541 0.82864 1.20569 1.21170 1.20098 1.60967 1.18754 1.11073 1.39988 1.21354 0.92993 0.92955 0.96790 0.90876 1.21726 1.00745 0.96274 1.00199 1.21206 0.80338 0.88729 0.78751 1.90653 1.64992 1.27269 1.57590 1.46105 1.16844 1.20151 1.55638 1.19543 0.80545 0.94926 0.93190 0.86366 1.22230 1.03309 1.02771 0.93747 1.22479 0.94616 0.82672 1.01669 1.22239 0.90009 0.99975 1.09288 1.19937 0.94397 0.92917 1.05680 1.20305 0.90101 1.00173 0.98342 1.20789 0.99121 0.93207 1.02407 1.20941 0.95548 0.95731 0.99150 1.19981 0.89107 0.99007 1.04291 1.19645 0.82305 0.94672 1.02719 1.83922 1.17280 1.31992 1.75766 0.90319 0.95461 0.96618 0.92881 0.83685 0.91040 0.92321 0.93288 0.75995 0.90369 0.91221 0.91838 0.82153 0.85485 0.85346 0.84758 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 9.20 37.16 0.34 -2.69 16 2 C 0.21 5.20 2.38 -68.86 -0.16 5.03 16 3 H 0.03 0.91 6.98 -51.93 -0.36 0.55 16 4 C -0.55 -14.95 8.31 -34.44 -0.29 -15.23 16 5 H 0.05 1.47 7.73 -52.49 -0.41 1.06 16 6 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 7 N -0.89 -25.04 11.39 55.43 0.63 -24.41 16 8 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.67 -14.87 5.91 -102.17 -0.60 -15.47 16 13 C 0.07 1.35 2.84 -68.86 -0.20 1.15 16 14 H 0.07 1.46 7.69 -51.93 -0.40 1.06 16 15 C -0.13 -2.05 9.26 37.16 0.34 -1.71 16 16 C 0.52 8.91 7.14 -10.98 -0.08 8.83 16 17 O -0.53 -10.52 15.34 5.56 0.09 -10.44 16 18 N -0.73 -9.76 4.97 -54.93 -0.27 -10.04 16 19 C 0.22 2.61 3.01 -69.08 -0.21 2.40 16 20 H 0.12 1.45 7.55 -51.93 -0.39 1.06 16 21 C -0.16 -1.67 9.47 37.16 0.35 -1.31 16 22 C 0.03 0.39 6.05 -35.80 -0.22 0.17 16 23 C -0.20 -2.09 10.99 -37.62 -0.41 -2.51 16 24 C -0.13 -1.42 6.40 -105.16 -0.67 -2.09 16 25 C -0.07 -0.63 10.05 -39.69 -0.40 -1.03 16 26 C -0.14 -1.03 9.98 -39.94 -0.40 -1.43 16 27 C -0.10 -0.72 10.01 -39.54 -0.40 -1.11 16 28 C -0.11 -0.97 10.07 -39.47 -0.40 -1.36 16 29 C 0.05 0.62 7.42 -38.47 -0.29 0.33 16 30 O -0.19 -2.28 10.19 3.89 0.04 -2.24 16 31 H 0.08 2.10 6.25 -51.93 -0.32 1.77 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.34 8.04 7.17 -39.29 -0.28 7.76 16 36 H 0.07 1.21 7.26 -51.93 -0.38 0.83 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.61 7.70 -51.93 -0.40 0.21 16 39 H 0.41 4.84 7.78 -40.82 -0.32 4.52 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 46 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 47 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -31.18 390.11 -9.48 -40.66 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.05 Total: 10.50 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -3.17 Total: -10.77 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.25 Total: -49.92 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.12 Total: -12.67 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.18 -9.48 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.251 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds