Wall clock time and date at job start Tue Mar 31 2020 15:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47630 * 2 1 4 4 C 1.50703 * 109.47239 * 239.99450 * 2 1 3 5 5 H 1.07997 * 120.00135 * 239.99903 * 4 2 1 6 6 C 1.37872 * 119.99514 * 60.00284 * 4 2 1 7 7 N 1.31513 * 120.00530 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99783 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47481 * 90.00069 * 8 6 4 10 10 H 1.48500 * 109.47551 * 209.99929 * 8 6 4 11 11 H 1.48500 * 109.47361 * 329.99777 * 8 6 4 12 12 N 1.46903 * 109.46962 * 119.99633 * 2 1 3 13 13 C 1.46897 * 111.00031 * 206.03431 * 12 2 1 14 14 H 1.08994 * 109.47325 * 323.33719 * 13 12 2 15 15 C 1.53003 * 109.46934 * 83.33504 * 13 12 2 16 16 C 1.50700 * 109.47356 * 203.33345 * 13 12 2 17 17 O 1.21282 * 119.99603 * 0.02562 * 16 13 12 18 18 N 1.34779 * 120.00080 * 180.02562 * 16 13 12 19 19 C 1.46495 * 119.99807 * 180.02562 * 18 16 13 20 20 H 1.09002 * 109.47326 * 34.99735 * 19 18 16 21 21 C 1.53002 * 109.47432 * 275.00019 * 19 18 16 22 22 C 1.50707 * 109.47184 * 155.00075 * 19 18 16 23 23 C 1.33997 * 124.92286 * 220.00240 * 22 19 18 24 24 C 1.46778 * 106.18381 * 179.97438 * 23 22 19 25 25 C 1.39404 * 134.37100 * 179.97438 * 24 23 22 26 26 C 1.36738 * 119.72021 * 180.02562 * 25 24 23 27 27 C 1.38743 * 120.41316 * 0.02562 * 26 25 24 28 28 C 1.37842 * 120.68676 * 0.02562 * 27 26 25 29 29 C 1.38939 * 119.81959 * 359.97438 * 28 27 26 30 30 O 1.34448 * 124.91858 * 39.97156 * 22 19 18 31 31 H 1.09000 * 109.46762 * 54.03972 * 1 2 3 32 32 H 1.08997 * 109.47199 * 174.04229 * 1 2 3 33 33 H 1.08999 * 109.46590 * 294.04611 * 1 2 3 34 34 H 0.96999 * 120.00522 * 180.02562 * 7 6 4 35 35 H 1.00903 * 110.99700 * 82.08503 * 12 2 1 36 36 H 1.08998 * 109.47227 * 304.82121 * 15 13 12 37 37 H 1.09005 * 109.47010 * 64.82005 * 15 13 12 38 38 H 1.09000 * 109.47045 * 184.81836 * 15 13 12 39 39 H 0.96990 * 119.99907 * 0.02562 * 18 16 13 40 40 H 1.09004 * 109.46779 * 59.99875 * 21 19 18 41 41 H 1.08999 * 109.47051 * 180.02562 * 21 19 18 42 42 H 1.09002 * 109.46633 * 300.00141 * 21 19 18 43 43 H 1.07999 * 126.90617 * 359.97438 * 23 22 19 44 44 H 1.08001 * 120.13845 * 0.02562 * 25 24 23 45 45 H 1.07993 * 119.79190 * 180.02562 * 26 25 24 46 46 H 1.08005 * 119.65396 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.09314 * 179.70512 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9437 0.8301 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3428 -2.1619 -4.4118 10 1 2.4867 -0.1417 -5.1122 11 1 3.6293 -1.7586 -3.7121 12 7 2.0197 -0.6924 1.1995 13 6 3.3569 -0.2139 1.5746 14 1 3.9354 -0.0089 0.6738 15 6 3.2270 1.0678 2.3999 16 6 4.0570 -1.2689 2.3919 17 8 3.4972 -2.3164 2.6374 18 7 5.3052 -1.0482 2.8502 19 6 5.9859 -2.0740 3.6442 20 1 5.7028 -3.0620 3.2811 21 6 5.5800 -1.9349 5.1128 22 6 7.4775 -1.9003 3.5167 23 6 8.3594 -2.9025 3.4016 24 6 9.6824 -2.2742 3.3050 25 6 10.9834 -2.7568 3.1711 26 6 12.0293 -1.8782 3.1087 27 6 11.8032 -0.5111 3.1783 28 6 10.5239 -0.0155 3.3117 29 6 9.4471 -0.8910 3.3770 30 8 8.1160 -0.7172 3.5014 31 1 -0.3633 0.6035 -0.8318 32 1 -0.3633 -1.0221 -0.1067 33 1 -0.3632 0.4188 0.9385 34 1 0.7091 1.1613 -3.4844 35 1 2.0179 -1.6926 1.0657 36 1 2.6461 1.8021 1.8418 37 1 2.7231 0.8448 3.3405 38 1 4.2191 1.4696 2.6056 39 1 5.7527 -0.2103 2.6542 40 1 4.5011 -2.0606 5.2050 41 1 6.0869 -2.6979 5.7037 42 1 5.8631 -0.9470 5.4760 43 1 8.1407 -3.9600 3.3836 44 1 11.1644 -3.8202 3.1170 45 1 13.0375 -2.2508 3.0046 46 1 12.6383 0.1719 3.1274 47 1 10.3594 1.0504 3.3697 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:57 Heat of formation + Delta-G solvation = -30.569633 kcal Electronic energy + Delta-G solvation = -27724.821713 eV Core-core repulsion = 23872.924342 eV Total energy + Delta-G solvation = -3851.897370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.56272 -41.09684 -38.91564 -37.81789 -36.63738 -34.88278 -33.93725 -32.74308 -31.47382 -31.37228 -29.54420 -28.82712 -27.16523 -25.80141 -24.46316 -23.78911 -22.64772 -22.01856 -21.74999 -21.02284 -19.02400 -18.42203 -18.33396 -17.89567 -17.28529 -16.96247 -16.72738 -16.33668 -16.32229 -15.72630 -15.28569 -15.01816 -14.83230 -14.71360 -14.50261 -14.18604 -14.07470 -13.78028 -13.53794 -13.35660 -13.24800 -13.13877 -13.05977 -12.91380 -12.79611 -12.76572 -12.58724 -12.47881 -12.26216 -12.01585 -11.94839 -11.89952 -11.17753 -11.12820 -10.78009 -10.53240 -10.33198 -9.62465 -9.19483 -9.16903 -8.10276 -6.30822 -0.12233 0.37349 1.21013 1.36338 1.38348 1.46988 1.48262 1.60935 2.03671 2.38277 2.75456 3.11816 3.18672 3.59240 3.66996 3.70783 3.94692 4.03150 4.07401 4.11099 4.23061 4.25350 4.37241 4.41569 4.50864 4.62561 4.68002 4.77485 4.79808 4.87484 4.89629 4.98058 5.11104 5.15327 5.20736 5.22715 5.25601 5.31486 5.34796 5.42661 5.46214 5.50234 5.64680 5.72324 6.01288 6.12478 6.13756 6.24922 6.39581 6.72638 6.93335 7.11015 7.40577 8.88573 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.002704 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.782563 B =10351.487130 C =11437.770250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 H 0.017 0.983 4 C -0.563 4.563 5 H 0.043 0.957 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.275 1.275 12 N -0.672 5.672 13 C 0.068 3.932 14 H 0.058 0.942 15 C -0.123 4.123 16 C 0.528 3.472 17 O -0.561 6.561 18 N -0.717 5.717 19 C 0.225 3.775 20 H 0.112 0.888 21 C -0.155 4.155 22 C 0.018 3.982 23 C -0.194 4.194 24 C -0.153 4.153 25 C -0.081 4.081 26 C -0.136 4.136 27 C -0.089 4.089 28 C -0.121 4.121 29 C 0.026 3.974 30 O -0.201 6.201 31 H 0.058 0.942 32 H 0.020 0.980 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.334 0.666 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.413 0.587 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.177 0.823 44 H 0.145 0.855 45 H 0.159 0.841 46 H 0.166 0.834 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.266 -2.665 15.211 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H 0.035 0.965 4 C -0.602 4.602 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.775 3.225 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.200 1.200 12 N -0.304 5.304 13 C -0.045 4.045 14 H 0.076 0.924 15 C -0.181 4.181 16 C 0.315 3.685 17 O -0.439 6.439 18 N -0.370 5.370 19 C 0.121 3.879 20 H 0.130 0.870 21 C -0.213 4.213 22 C -0.030 4.030 23 C -0.214 4.214 24 C -0.154 4.154 25 C -0.099 4.099 26 C -0.153 4.153 27 C -0.107 4.107 28 C -0.139 4.139 29 C -0.020 4.020 30 O -0.103 6.103 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.152 0.848 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.249 0.751 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.195 0.805 44 H 0.163 0.837 45 H 0.176 0.824 46 H 0.184 0.816 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 22.324 -2.612 15.720 27.429 hybrid contribution 0.571 -0.564 -1.933 2.093 sum 22.895 -3.176 13.787 26.914 Atomic orbital electron populations 1.21514 0.97457 0.99078 0.99047 1.19022 0.92638 0.93070 0.84710 0.96545 1.22079 1.32194 1.12696 0.93213 0.93845 1.25611 0.94963 0.95485 1.01541 1.69993 1.36940 1.23570 1.24217 0.85698 0.78634 0.78549 0.79584 1.20225 1.20366 1.20004 1.60912 1.21166 1.10169 1.38181 1.21449 0.91326 0.94730 0.97038 0.92382 1.21676 1.02697 0.94334 0.99388 1.20818 0.81234 0.87753 0.78654 1.90640 1.66047 1.28194 1.59017 1.45937 1.15532 1.20845 1.54710 1.19595 0.80837 0.93864 0.93648 0.87047 1.22163 1.02444 1.03773 0.92902 1.22331 0.94255 0.82993 1.03391 1.22548 0.90079 1.00697 1.08053 1.20231 0.95295 0.92980 1.06922 1.20650 0.89617 1.01563 0.98096 1.21225 1.00187 0.93139 1.00784 1.21404 0.95718 0.96470 0.97072 1.20351 0.89276 0.99661 1.04644 1.20120 0.82348 0.95669 1.03903 1.83868 1.17897 1.32244 1.76323 0.92276 0.96092 0.94989 0.92669 0.84752 0.92521 0.91900 0.89805 0.75059 0.91807 0.89301 0.91348 0.80528 0.83732 0.82359 0.81621 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.69 9.20 71.98 0.66 -5.02 16 2 C 0.21 10.96 2.38 44.17 0.11 11.06 16 3 H 0.02 0.90 6.98 -2.39 -0.02 0.89 16 4 C -0.56 -31.25 8.31 25.60 0.21 -31.03 16 5 H 0.04 2.44 7.73 -2.91 -0.02 2.42 16 6 C 0.02 1.36 5.30 84.65 0.45 1.81 16 7 N -0.91 -51.82 11.39 21.45 0.24 -51.58 16 8 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 N -0.67 -30.22 5.91 -477.14 -2.82 -33.05 16 13 C 0.07 2.55 2.84 44.17 0.13 2.68 16 14 H 0.06 2.37 7.69 -2.39 -0.02 2.35 16 15 C -0.12 -3.77 9.26 71.98 0.67 -3.11 16 16 C 0.53 18.11 7.14 87.66 0.63 18.74 16 17 O -0.56 -22.60 15.34 -3.04 -0.05 -22.65 16 18 N -0.72 -18.87 4.97 -446.09 -2.22 -21.09 16 19 C 0.22 5.18 3.01 44.25 0.13 5.32 16 20 H 0.11 2.75 7.55 -2.39 -0.02 2.73 16 21 C -0.15 -3.06 9.47 71.98 0.68 -2.38 16 22 C 0.02 0.41 6.05 24.72 0.15 0.56 16 23 C -0.19 -4.04 10.99 23.54 0.26 -3.78 16 24 C -0.15 -3.24 6.40 -20.22 -0.13 -3.37 16 25 C -0.08 -1.29 10.05 22.20 0.22 -1.07 16 26 C -0.14 -1.64 9.98 22.04 0.22 -1.42 16 27 C -0.09 -1.08 10.01 22.30 0.22 -0.86 16 28 C -0.12 -2.04 10.07 22.34 0.23 -1.81 16 29 C 0.03 0.59 7.42 22.99 0.17 0.76 16 30 O -0.20 -4.81 10.19 -8.98 -0.09 -4.90 16 31 H 0.06 3.20 6.25 -2.39 -0.01 3.19 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.33 16.05 7.17 -89.69 -0.64 15.41 16 36 H 0.06 1.92 7.26 -2.39 -0.02 1.90 16 37 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.08 1.96 7.70 -2.39 -0.02 1.94 16 39 H 0.41 9.60 7.78 -92.72 -0.72 8.87 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 44 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 45 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 46 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 47 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -67.78 390.11 1.72 -66.06 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.37 Total: 34.14 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 5.00 Total: -12.92 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -4.80 Total: -105.71 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.14 Total: -27.55 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.78 1.72 -66.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.493 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds