Wall clock time and date at job start Tue Mar 31 2020 15:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46790 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47548 * 120.00188 * 8 6 4 11 11 H 1.48504 * 109.47233 * 240.00380 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 13 13 C 1.46903 * 110.99807 * 275.00039 * 12 2 1 14 14 C 1.50705 * 109.46848 * 180.02562 * 13 12 2 15 15 O 1.21274 * 119.99973 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99593 * 180.02562 * 14 13 12 17 17 C 1.46501 * 120.00169 * 359.97438 * 16 14 13 18 18 C 1.46496 * 119.99571 * 180.02562 * 16 14 13 19 19 H 1.08996 * 109.47521 * 359.97438 * 18 16 14 20 20 C 1.53007 * 109.47190 * 119.99821 * 18 16 14 21 21 C 1.50700 * 109.47032 * 239.99763 * 18 16 14 22 22 C 1.33997 * 124.92409 * 139.72317 * 21 18 16 23 23 C 1.46786 * 106.18420 * 179.89644 * 22 21 18 24 24 C 1.39407 * 134.37168 * 180.11301 * 23 22 21 25 25 C 1.36729 * 119.71922 * 180.26573 * 24 23 22 26 26 C 1.38744 * 120.41846 * 0.02562 * 25 24 23 27 27 C 1.37852 * 120.68141 * 0.02562 * 26 25 24 28 28 C 1.38933 * 119.82220 * 359.97438 * 27 26 25 29 29 O 1.34454 * 124.92165 * 320.02423 * 21 18 16 30 30 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 31 31 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 34 34 H 1.00902 * 111.00121 * 38.95441 * 12 2 1 35 35 H 1.09001 * 109.47143 * 300.00154 * 13 12 2 36 36 H 1.08998 * 109.47112 * 60.00049 * 13 12 2 37 37 H 1.09003 * 109.46532 * 90.00527 * 17 16 14 38 38 H 1.09000 * 109.47128 * 210.00070 * 17 16 14 39 39 H 1.08993 * 109.47326 * 330.00736 * 17 16 14 40 40 H 1.08994 * 109.46813 * 299.99832 * 20 18 16 41 41 H 1.08996 * 109.46856 * 59.99633 * 20 18 16 42 42 H 1.09003 * 109.46889 * 179.97438 * 20 18 16 43 43 H 1.07994 * 126.90734 * 0.02562 * 22 21 18 44 44 H 1.08004 * 120.14105 * 0.29201 * 24 23 22 45 45 H 1.08004 * 119.79605 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.66073 * 179.97438 * 26 25 24 47 47 H 1.08008 * 120.08514 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1456 -2.2874 -3.6039 10 1 1.1661 -1.5865 -4.8162 11 1 3.1466 -0.1870 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5886 -0.5216 3.5557 15 8 2.8697 -1.6982 3.4696 16 7 2.7287 0.1205 4.7324 17 6 2.3896 1.5419 4.8361 18 6 3.2212 -0.6028 5.9073 19 1 3.4190 -1.6405 5.6387 20 6 4.5122 0.0508 6.4044 21 6 2.1822 -0.5560 6.9979 22 6 1.8686 -1.5802 7.8031 23 6 0.8197 -1.0864 8.7034 24 6 0.0882 -1.6483 9.7487 25 6 -0.8489 -0.8962 10.4012 26 6 -1.0759 0.4210 10.0290 27 6 -0.3630 0.9932 8.9971 28 6 0.5938 0.2465 8.3210 29 8 1.4316 0.5177 7.3003 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7094 1.1619 -3.4844 34 1 1.4496 -1.4980 1.4100 35 1 2.7589 1.0462 2.1182 36 1 1.0871 0.6162 2.5525 37 1 1.3403 1.6458 5.1125 38 1 3.0139 2.0097 5.5974 39 1 2.5621 2.0277 3.8758 40 1 5.2636 0.0169 5.6156 41 1 4.3140 1.0883 6.6731 42 1 4.8784 -0.4872 7.2789 43 1 2.3021 -2.5693 7.7931 44 1 0.2612 -2.6732 10.0422 45 1 -1.4160 -1.3301 11.2115 46 1 -1.8193 1.0038 10.5525 47 1 -0.5473 2.0195 8.7156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:32 Heat of formation + Delta-G solvation = 4.615500 kcal Electronic energy + Delta-G solvation = -27768.134339 eV Core-core repulsion = 23917.762711 eV Total energy + Delta-G solvation = -3850.371628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.73535 -39.84089 -38.17271 -36.35542 -35.52877 -33.43110 -32.53431 -31.75729 -30.68390 -29.12410 -28.74589 -26.96588 -25.57659 -25.03849 -23.96230 -22.93469 -21.88382 -21.03456 -20.20936 -19.21168 -17.63554 -17.25135 -17.08819 -16.43910 -16.23622 -16.10018 -15.44095 -15.24464 -14.63835 -14.49222 -14.26683 -14.09830 -13.59318 -13.45319 -13.25894 -13.24208 -12.78161 -12.69256 -12.57676 -12.48794 -12.42764 -12.25273 -12.01745 -11.63127 -11.59726 -11.50661 -11.22876 -10.93996 -10.77783 -10.52421 -10.36052 -10.14620 -9.96428 -9.52718 -8.97482 -8.89525 -8.79944 -8.41029 -8.35426 -7.25796 -5.97777 -4.00149 0.61920 1.08783 2.04851 2.38208 2.87278 2.95636 3.33994 3.41534 3.44265 3.48569 4.02347 4.38257 4.46167 4.61093 4.65193 4.79020 4.84759 4.92879 5.00511 5.01141 5.07113 5.13577 5.31993 5.34336 5.36380 5.41020 5.46539 5.56628 5.60452 5.67170 5.83425 5.84961 5.89395 5.95795 5.97822 6.13885 6.15496 6.30080 6.45807 6.65375 6.82561 6.94937 7.05674 7.22587 7.39096 7.73491 7.89846 8.24036 8.34676 8.52278 8.60564 9.08199 9.65165 11.09593 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.002289 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.260513 B =12230.402205 C =12688.720536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.492 4.492 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.669 5.669 13 C 0.047 3.953 14 C 0.518 3.482 15 O -0.521 6.521 16 N -0.620 5.620 17 C 0.079 3.921 18 C 0.214 3.786 19 H 0.132 0.868 20 C -0.161 4.161 21 C 0.035 3.965 22 C -0.201 4.201 23 C -0.128 4.128 24 C -0.072 4.072 25 C -0.138 4.138 26 C -0.097 4.097 27 C -0.106 4.106 28 C 0.050 3.950 29 O -0.183 6.183 30 H 0.004 0.996 31 H 0.091 0.909 32 H 0.029 0.971 33 H 0.259 0.741 34 H 0.335 0.665 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.159 0.841 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.134 0.866 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 2.081 27.673 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.531 4.531 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.300 5.300 13 C -0.086 4.086 14 C 0.307 3.693 15 O -0.395 6.395 16 N -0.356 5.356 17 C -0.064 4.064 18 C 0.110 3.890 19 H 0.150 0.850 20 C -0.219 4.219 21 C -0.014 4.014 22 C -0.221 4.221 23 C -0.129 4.129 24 C -0.090 4.090 25 C -0.156 4.156 26 C -0.115 4.115 27 C -0.124 4.124 28 C 0.003 3.997 29 O -0.085 6.085 30 H 0.023 0.977 31 H 0.109 0.891 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.153 0.847 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.177 0.823 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.152 0.848 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.341 1.896 27.135 27.203 hybrid contribution -0.849 -0.260 -0.474 1.006 sum -0.508 1.636 26.661 26.716 Atomic orbital electron populations 1.22460 1.00618 0.99425 1.00506 1.19231 0.89638 0.94409 0.86262 0.94760 1.21191 1.30026 1.12455 0.89382 0.91693 1.24951 0.95359 0.95247 0.99074 1.69890 1.37498 1.23278 1.23252 0.86426 0.78503 0.79700 0.82704 1.19659 1.21221 1.21157 1.60605 1.59041 1.08380 1.01986 1.21827 0.99884 0.96841 0.90037 1.21211 0.76720 0.87641 0.83697 1.90663 1.48848 1.16071 1.83904 1.47997 1.67344 1.11234 1.09053 1.21824 1.01039 0.80375 1.03136 1.19703 0.88564 1.00291 0.80476 0.85014 1.22188 0.95866 1.01539 1.02270 1.22845 0.95080 0.85144 0.98283 1.22240 1.00918 1.00281 0.98663 1.19954 0.99541 0.94229 0.99151 1.20299 0.94867 0.99904 0.93923 1.20774 0.99240 0.94504 1.01076 1.20927 0.98994 0.95390 0.96211 1.19959 0.95591 1.00098 0.96798 1.19694 0.94800 0.94823 0.90401 1.84010 1.43198 1.37256 1.43997 0.97703 0.89054 0.95163 0.93141 0.84686 0.88622 0.93355 0.92339 0.91022 0.90317 0.90558 0.91650 0.90868 0.82321 0.85562 0.85415 0.84848 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.35 2.57 -68.86 -0.18 5.18 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.52 16 4 C -0.49 -13.84 8.84 -34.44 -0.30 -14.15 16 5 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.69 11.32 55.43 0.63 -25.06 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.67 -14.97 5.86 -109.21 -0.64 -15.61 16 13 C 0.05 0.84 4.52 -4.97 -0.02 0.82 16 14 C 0.52 8.76 7.71 -10.98 -0.08 8.68 16 15 O -0.52 -10.50 15.53 5.56 0.09 -10.41 16 16 N -0.62 -8.11 2.75 -175.26 -0.48 -8.60 16 17 C 0.08 0.83 8.78 59.85 0.53 1.35 16 18 C 0.21 2.46 3.09 -69.08 -0.21 2.24 16 19 H 0.13 1.65 6.87 -51.93 -0.36 1.30 16 20 C -0.16 -1.42 9.15 37.16 0.34 -1.08 16 21 C 0.04 0.42 6.02 -35.80 -0.22 0.20 16 22 C -0.20 -2.25 10.99 -37.62 -0.41 -2.67 16 23 C -0.13 -1.45 6.40 -105.16 -0.67 -2.13 16 24 C -0.07 -0.66 10.05 -39.69 -0.40 -1.06 16 25 C -0.14 -1.07 9.98 -39.94 -0.40 -1.47 16 26 C -0.10 -0.75 10.01 -39.54 -0.40 -1.14 16 27 C -0.11 -0.99 10.07 -39.47 -0.40 -1.39 16 28 C 0.05 0.59 7.42 -38.47 -0.29 0.30 16 29 O -0.18 -2.23 8.72 3.90 0.03 -2.20 16 30 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 31 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 32 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.34 7.56 8.17 -39.29 -0.32 7.24 16 35 H 0.10 1.61 7.32 -51.93 -0.38 1.23 16 36 H 0.05 0.82 7.40 -51.93 -0.38 0.44 16 37 H 0.06 0.62 7.54 -51.93 -0.39 0.23 16 38 H 0.07 0.62 6.42 -51.93 -0.33 0.29 16 39 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.54 6.66 -51.93 -0.35 0.19 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 45 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 46 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 47 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -32.69 383.85 -9.37 -42.06 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.88 Total: 5.95 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -2.88 Total: -8.68 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.49 Total: -49.27 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.12 Total: -12.61 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.69 -9.37 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.677 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds