Wall clock time and date at job start Tue Mar 31 2020 15:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46790 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47548 * 120.00188 * 8 6 4 11 11 H 1.48504 * 109.47233 * 240.00380 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 13 13 C 1.46903 * 110.99807 * 275.00039 * 12 2 1 14 14 C 1.50705 * 109.46848 * 180.02562 * 13 12 2 15 15 O 1.21274 * 119.99973 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99593 * 180.02562 * 14 13 12 17 17 C 1.46501 * 120.00169 * 359.97438 * 16 14 13 18 18 C 1.46496 * 119.99571 * 180.02562 * 16 14 13 19 19 H 1.08996 * 109.47521 * 359.97438 * 18 16 14 20 20 C 1.53007 * 109.47190 * 119.99821 * 18 16 14 21 21 C 1.50700 * 109.47032 * 239.99763 * 18 16 14 22 22 C 1.33997 * 124.92409 * 139.72317 * 21 18 16 23 23 C 1.46786 * 106.18420 * 179.89644 * 22 21 18 24 24 C 1.39407 * 134.37168 * 180.11301 * 23 22 21 25 25 C 1.36729 * 119.71922 * 180.26573 * 24 23 22 26 26 C 1.38744 * 120.41846 * 0.02562 * 25 24 23 27 27 C 1.37852 * 120.68141 * 0.02562 * 26 25 24 28 28 C 1.38933 * 119.82220 * 359.97438 * 27 26 25 29 29 O 1.34454 * 124.92165 * 320.02423 * 21 18 16 30 30 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 31 31 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 34 34 H 1.00902 * 111.00121 * 38.95441 * 12 2 1 35 35 H 1.09001 * 109.47143 * 300.00154 * 13 12 2 36 36 H 1.08998 * 109.47112 * 60.00049 * 13 12 2 37 37 H 1.09003 * 109.46532 * 90.00527 * 17 16 14 38 38 H 1.09000 * 109.47128 * 210.00070 * 17 16 14 39 39 H 1.08993 * 109.47326 * 330.00736 * 17 16 14 40 40 H 1.08994 * 109.46813 * 299.99832 * 20 18 16 41 41 H 1.08996 * 109.46856 * 59.99633 * 20 18 16 42 42 H 1.09003 * 109.46889 * 179.97438 * 20 18 16 43 43 H 1.07994 * 126.90734 * 0.02562 * 22 21 18 44 44 H 1.08004 * 120.14105 * 0.29201 * 24 23 22 45 45 H 1.08004 * 119.79605 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.66073 * 179.97438 * 26 25 24 47 47 H 1.08008 * 120.08514 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1456 -2.2874 -3.6039 10 1 1.1661 -1.5865 -4.8162 11 1 3.1466 -0.1870 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5886 -0.5216 3.5557 15 8 2.8697 -1.6982 3.4696 16 7 2.7287 0.1205 4.7324 17 6 2.3896 1.5419 4.8361 18 6 3.2212 -0.6028 5.9073 19 1 3.4190 -1.6405 5.6387 20 6 4.5122 0.0508 6.4044 21 6 2.1822 -0.5560 6.9979 22 6 1.8686 -1.5802 7.8031 23 6 0.8197 -1.0864 8.7034 24 6 0.0882 -1.6483 9.7487 25 6 -0.8489 -0.8962 10.4012 26 6 -1.0759 0.4210 10.0290 27 6 -0.3630 0.9932 8.9971 28 6 0.5938 0.2465 8.3210 29 8 1.4316 0.5177 7.3003 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7094 1.1619 -3.4844 34 1 1.4496 -1.4980 1.4100 35 1 2.7589 1.0462 2.1182 36 1 1.0871 0.6162 2.5525 37 1 1.3403 1.6458 5.1125 38 1 3.0139 2.0097 5.5974 39 1 2.5621 2.0277 3.8758 40 1 5.2636 0.0169 5.6156 41 1 4.3140 1.0883 6.6731 42 1 4.8784 -0.4872 7.2789 43 1 2.3021 -2.5693 7.7931 44 1 0.2612 -2.6732 10.0422 45 1 -1.4160 -1.3301 11.2115 46 1 -1.8193 1.0038 10.5525 47 1 -0.5473 2.0195 8.7156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:31 Heat of formation + Delta-G solvation = -14.949516 kcal Electronic energy + Delta-G solvation = -27768.982742 eV Core-core repulsion = 23917.762711 eV Total energy + Delta-G solvation = -3851.220031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.52715 -41.08056 -38.89764 -37.77930 -37.05091 -34.61086 -34.14723 -32.74723 -31.36559 -30.80675 -29.56640 -27.93336 -27.32036 -26.85907 -24.87942 -23.69065 -22.71863 -22.19964 -21.85519 -20.36076 -18.67404 -18.37186 -18.22931 -17.81488 -17.30166 -17.01337 -16.72864 -16.57018 -16.31440 -15.65821 -15.18455 -14.97735 -14.90991 -14.68862 -14.31109 -14.30039 -14.09270 -13.97854 -13.59981 -13.57386 -13.36876 -13.21700 -13.05242 -12.98494 -12.87973 -12.75502 -12.69723 -12.43186 -12.37878 -12.17860 -11.96202 -11.89084 -11.18096 -11.12399 -10.78453 -10.48672 -9.89491 -9.60717 -9.16479 -9.03103 -8.10714 -6.20676 -0.10008 0.38577 1.22065 1.41908 1.43818 1.44910 1.56711 1.68103 1.89650 2.44970 2.76030 3.17789 3.21613 3.49678 3.68613 3.69924 3.93570 4.04025 4.07565 4.11769 4.17913 4.24337 4.35628 4.38448 4.40282 4.51367 4.60266 4.64744 4.69199 4.73019 4.79859 4.86569 4.87100 4.92417 5.05412 5.13623 5.22984 5.31783 5.32525 5.37722 5.44730 5.50489 5.68741 5.74104 5.79194 6.13053 6.17958 6.26609 6.59036 6.69575 6.91468 7.08752 7.48742 8.95120 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.002289 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.260513 B =12230.402205 C =12688.720536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.218 3.782 3 H 0.016 0.984 4 C -0.516 4.516 5 H 0.049 0.951 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.278 1.278 12 N -0.680 5.680 13 C 0.049 3.951 14 C 0.520 3.480 15 O -0.562 6.562 16 N -0.610 5.610 17 C 0.074 3.926 18 C 0.213 3.787 19 H 0.117 0.883 20 C -0.152 4.152 21 C 0.021 3.979 22 C -0.207 4.207 23 C -0.154 4.154 24 C -0.084 4.084 25 C -0.136 4.136 26 C -0.091 4.091 27 C -0.120 4.120 28 C 0.023 3.977 29 O -0.193 6.193 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.262 0.738 34 H 0.332 0.668 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.171 0.829 44 H 0.142 0.858 45 H 0.158 0.842 46 H 0.166 0.834 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 2.654 29.531 29.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.110 3.890 3 H 0.034 0.966 4 C -0.555 4.555 5 H 0.067 0.933 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.204 1.204 12 N -0.311 5.311 13 C -0.084 4.084 14 C 0.309 3.691 15 O -0.439 6.439 16 N -0.344 5.344 17 C -0.067 4.067 18 C 0.110 3.890 19 H 0.135 0.865 20 C -0.210 4.210 21 C -0.028 4.028 22 C -0.227 4.227 23 C -0.155 4.155 24 C -0.102 4.102 25 C -0.153 4.153 26 C -0.108 4.108 27 C -0.138 4.138 28 C -0.024 4.024 29 O -0.095 6.095 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.188 0.812 44 H 0.160 0.840 45 H 0.176 0.824 46 H 0.184 0.816 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.229 2.505 29.039 29.148 hybrid contribution -0.748 -0.399 -0.879 1.221 sum -0.977 2.106 28.161 28.256 Atomic orbital electron populations 1.22267 0.99811 0.99191 1.00485 1.18997 0.90133 0.93106 0.86752 0.96636 1.21434 1.30452 1.12431 0.91149 0.93302 1.25662 0.95451 0.95918 1.01675 1.69988 1.37891 1.24048 1.24022 0.85480 0.78099 0.78574 0.79288 1.19831 1.20481 1.20399 1.60438 1.58846 1.08995 1.02866 1.21847 1.01011 0.96334 0.89172 1.20960 0.76606 0.87026 0.84497 1.90645 1.50982 1.17599 1.84714 1.47967 1.65907 1.12187 1.08362 1.22019 1.01559 0.78818 1.04334 1.19796 0.89780 0.99680 0.79788 0.86492 1.22144 0.94190 1.02001 1.02672 1.22786 0.95691 0.85537 0.98768 1.22523 1.00867 1.00684 0.98594 1.20247 1.00353 0.94599 1.00266 1.20631 0.95009 1.00995 0.93548 1.21206 0.98489 0.94486 1.01167 1.21396 0.98602 0.95634 0.95217 1.20334 0.95365 1.00912 0.97182 1.20164 0.95668 0.95650 0.90886 1.83956 1.43572 1.37393 1.44535 0.95183 0.91447 0.95409 0.92871 0.85038 0.87606 0.91943 0.92326 0.88838 0.89602 0.90797 0.90742 0.89259 0.81157 0.84000 0.82434 0.81636 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.64 8.94 71.98 0.64 -7.00 16 2 C 0.22 11.17 2.57 44.17 0.11 11.29 16 3 H 0.02 0.85 7.80 -2.39 -0.02 0.84 16 4 C -0.52 -29.52 8.84 25.60 0.23 -29.29 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -52.73 11.32 21.45 0.24 -52.49 16 8 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 9 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.68 -30.90 5.86 -499.44 -2.92 -33.82 16 13 C 0.05 1.73 4.52 85.56 0.39 2.12 16 14 C 0.52 17.70 7.71 87.66 0.68 18.37 16 15 O -0.56 -23.24 15.53 -3.01 -0.05 -23.29 16 16 N -0.61 -15.73 2.75 -826.80 -2.28 -18.01 16 17 C 0.07 1.47 8.78 127.77 1.12 2.59 16 18 C 0.21 4.87 3.09 44.25 0.14 5.01 16 19 H 0.12 3.03 6.87 -2.39 -0.02 3.02 16 20 C -0.15 -2.53 9.15 71.98 0.66 -1.87 16 21 C 0.02 0.49 6.02 24.72 0.15 0.63 16 22 C -0.21 -4.65 10.99 23.54 0.26 -4.39 16 23 C -0.15 -3.42 6.40 -20.21 -0.13 -3.55 16 24 C -0.08 -1.42 10.05 22.20 0.22 -1.20 16 25 C -0.14 -1.74 9.98 22.04 0.22 -1.52 16 26 C -0.09 -1.14 10.01 22.30 0.22 -0.92 16 27 C -0.12 -2.04 10.07 22.34 0.23 -1.81 16 28 C 0.02 0.53 7.42 22.99 0.17 0.70 16 29 O -0.19 -4.62 8.72 -8.95 -0.08 -4.70 16 30 H 0.03 1.25 7.45 -2.39 -0.02 1.23 16 31 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 32 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 33 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.33 15.29 8.17 -89.69 -0.73 14.55 16 35 H 0.11 3.52 7.32 -2.39 -0.02 3.50 16 36 H 0.06 2.06 7.40 -2.39 -0.02 2.04 16 37 H 0.06 1.19 7.54 -2.39 -0.02 1.17 16 38 H 0.09 1.45 6.42 -2.39 -0.02 1.43 16 39 H 0.09 1.57 6.44 -2.39 -0.02 1.56 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.10 6.66 -2.39 -0.02 1.08 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 44 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 46 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 47 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -71.28 383.85 2.95 -68.33 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.25 Total: 26.84 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 5.75 Total: -9.75 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.96 Total: -104.33 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.12 Total: -27.99 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.28 2.95 -68.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.385 kcal (2) G-P(sol) polarization free energy of solvation -71.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds