Wall clock time and date at job start Tue Mar 31 2020 16:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46887 * 2 1 4 4 C 1.46506 * 120.00007 * 267.61527 * 3 2 1 5 5 C 1.53003 * 109.46913 * 269.99932 * 4 3 2 6 6 C 1.53002 * 109.46957 * 184.99759 * 5 4 3 7 7 C 1.52996 * 109.47239 * 305.00346 * 5 4 3 8 8 O 1.42902 * 109.46874 * 65.00313 * 5 4 3 9 9 C 1.34780 * 120.00089 * 87.61769 * 3 2 1 10 10 O 1.21663 * 120.00032 * 185.05663 * 9 3 2 11 11 C 1.46891 * 119.99873 * 5.05581 * 9 3 2 12 12 C 1.36126 * 125.43710 * 340.89277 * 11 9 3 13 13 C 1.41698 * 107.74792 * 180.23683 * 12 11 9 14 14 C 1.40019 * 133.35101 * 179.81283 * 13 12 11 15 15 C 1.36580 * 119.82885 * 179.97438 * 14 13 12 16 16 C 1.38850 * 120.60260 * 0.02562 * 15 14 13 17 17 C 1.37846 * 120.63430 * 359.97438 * 16 15 14 18 18 C 1.39090 * 119.81391 * 0.02562 * 17 16 15 19 19 N 1.37831 * 133.16474 * 180.02562 * 18 17 16 20 20 C 1.36890 * 125.62083 * 359.94499 * 19 18 17 21 21 H 1.07997 * 120.00017 * 226.87913 * 20 19 18 22 22 C 1.39009 * 120.00107 * 46.87945 * 20 19 18 23 23 N 1.31350 * 120.00342 * 188.08357 * 22 20 19 24 24 Si 1.86800 * 119.99896 * 7.80895 * 22 20 19 25 25 H 1.48496 * 109.47320 * 264.23046 * 24 22 20 26 26 H 1.48505 * 109.47271 * 24.22908 * 24 22 20 27 27 H 1.48504 * 109.47369 * 144.22635 * 24 22 20 28 28 H 1.08996 * 109.47162 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46779 * 300.00130 * 1 2 3 30 30 H 1.09000 * 109.47370 * 59.99800 * 1 2 3 31 31 H 1.08999 * 109.47204 * 240.00418 * 2 1 3 32 32 H 1.08992 * 109.47589 * 119.99949 * 2 1 3 33 33 H 1.08992 * 109.46827 * 29.99779 * 4 3 2 34 34 H 1.08996 * 109.46863 * 150.00446 * 4 3 2 35 35 H 1.08997 * 109.46852 * 60.00264 * 6 5 4 36 36 H 1.08994 * 109.47206 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47340 * 300.00443 * 6 5 4 38 38 H 1.08998 * 109.47608 * 60.00346 * 7 5 4 39 39 H 1.09004 * 109.47014 * 180.02562 * 7 5 4 40 40 H 1.08999 * 109.46968 * 299.99180 * 7 5 4 41 41 H 0.96703 * 114.00639 * 59.99728 * 8 5 4 42 42 H 1.08003 * 126.12383 * 0.02562 * 12 11 9 43 43 H 1.07998 * 120.08633 * 359.95009 * 14 13 12 44 44 H 1.08004 * 119.69792 * 180.02562 * 15 14 13 45 45 H 1.07999 * 119.68388 * 179.97438 * 16 15 14 46 46 H 1.07995 * 120.09389 * 180.02562 * 17 16 15 47 47 H 0.96994 * 120.00201 * 179.72698 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3122 2.0543 -1.2677 5 6 3.7734 1.8082 -1.6489 6 6 4.1149 2.6116 -2.9055 7 6 4.6816 2.2489 -0.4992 8 8 3.9708 0.4163 -1.9052 9 6 2.1972 2.0328 1.1662 10 8 2.5139 3.2075 1.1644 11 6 2.0096 1.3247 2.4394 12 6 1.3205 0.1620 2.6018 13 6 1.3719 -0.1823 3.9754 14 6 0.8510 -1.2480 4.7193 15 6 1.0739 -1.3100 6.0654 16 6 1.8132 -0.3243 6.7055 17 6 2.3363 0.7346 5.9946 18 6 2.1226 0.8194 4.6228 19 7 2.5063 1.7315 3.6634 20 6 3.2522 2.8574 3.8867 21 1 2.9443 3.8019 3.4632 22 6 4.4060 2.7849 4.6586 23 7 5.0342 3.8850 5.0057 24 14 5.0589 1.1235 5.2087 25 1 4.5687 0.8279 6.5789 26 1 4.5834 0.0710 4.2751 27 1 6.5437 1.1505 5.2092 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6617 1.6595 -2.0480 34 1 2.1406 3.1252 -1.1588 35 1 3.9642 3.6733 -2.7100 36 1 5.1556 2.4360 -3.1773 37 1 3.4678 2.2976 -3.7245 38 1 4.4384 1.6765 0.3959 39 1 5.7226 2.0740 -0.7710 40 1 4.5311 3.3106 -0.3038 41 1 3.4258 0.0674 -2.6238 42 1 0.8209 -0.3961 1.8237 43 1 0.2741 -2.0189 4.2301 44 1 0.6715 -2.1332 6.6371 45 1 1.9801 -0.3878 7.7706 46 1 2.9103 1.4962 6.5012 47 1 5.8370 3.8347 5.5477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610474074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:07 Heat of formation + Delta-G solvation = 6.529218 kcal Electronic energy + Delta-G solvation = -30203.281026 eV Core-core repulsion = 26352.992382 eV Total energy + Delta-G solvation = -3850.288643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.00438 -39.52545 -37.56671 -36.08015 -35.60060 -33.46704 -32.58168 -31.36507 -30.24389 -29.23032 -28.65906 -27.18680 -26.20945 -24.76576 -23.48435 -22.40912 -21.15327 -20.37271 -20.06134 -19.01371 -17.99915 -16.68005 -16.38584 -16.02328 -15.74709 -15.41854 -14.97786 -14.84824 -14.62309 -14.13997 -13.98439 -13.76708 -13.37568 -13.17281 -13.00426 -12.76907 -12.58136 -12.52828 -12.27790 -12.18653 -11.83430 -11.77820 -11.58673 -11.47470 -11.36804 -11.30331 -11.06194 -10.79852 -10.78115 -10.73319 -10.41499 -10.21023 -10.04615 -9.84279 -9.41028 -9.10140 -8.63422 -8.22609 -7.32230 -6.92988 -6.74941 -4.48670 1.60403 2.48683 2.83530 3.06361 3.13156 3.22266 3.28055 3.95666 4.06528 4.28210 4.37276 4.61625 4.81045 4.81909 4.91993 5.03074 5.16331 5.17837 5.39328 5.45330 5.55634 5.62506 5.65811 5.69568 5.77729 5.85131 5.88380 5.95353 5.97562 6.01692 6.13423 6.19161 6.20934 6.27558 6.33795 6.45884 6.57489 6.67945 6.69384 6.81273 6.89783 7.20716 7.31175 7.33856 7.59202 7.62563 7.70902 7.83449 7.94985 8.31258 8.75556 8.86750 9.11268 10.28771 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.005476 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.439056 B = 5112.351654 C = 6486.412303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 N -0.602 5.602 4 C 0.098 3.902 5 C 0.111 3.889 6 C -0.174 4.174 7 C -0.133 4.133 8 O -0.554 6.554 9 C 0.588 3.412 10 O -0.522 6.522 11 C -0.004 4.004 12 C -0.226 4.226 13 C -0.120 4.120 14 C -0.081 4.081 15 C -0.157 4.157 16 C -0.133 4.133 17 C -0.108 4.108 18 C 0.054 3.946 19 N -0.254 5.254 20 C -0.333 4.333 21 H 0.131 0.869 22 C 0.078 3.922 23 N -0.834 5.834 24 Si 0.874 3.126 25 H -0.249 1.249 26 H -0.252 1.252 27 H -0.285 1.285 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.366 0.634 42 H 0.161 0.839 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.120 0.880 47 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 -8.590 -10.936 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.039 4.039 3 N -0.336 5.336 4 C -0.026 4.026 5 C 0.070 3.930 6 C -0.232 4.232 7 C -0.191 4.191 8 O -0.359 6.359 9 C 0.378 3.622 10 O -0.397 6.397 11 C -0.120 4.120 12 C -0.252 4.252 13 C -0.125 4.125 14 C -0.099 4.099 15 C -0.177 4.177 16 C -0.153 4.153 17 C -0.128 4.128 18 C -0.059 4.059 19 N 0.084 4.916 20 C -0.461 4.461 21 H 0.148 0.852 22 C -0.135 4.135 23 N -0.464 5.464 24 Si 0.699 3.301 25 H -0.174 1.174 26 H -0.176 1.176 27 H -0.212 1.212 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.212 0.788 42 H 0.178 0.822 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.138 0.862 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.669 -7.373 -10.298 13.499 hybrid contribution 0.104 -0.647 -0.168 0.676 sum -4.565 -8.020 -10.465 13.953 Atomic orbital electron populations 1.22390 0.96478 1.02172 1.02800 1.22259 0.93680 0.83015 1.04955 1.47385 1.67219 1.14244 1.04737 1.22050 0.95169 0.99805 0.85550 1.21747 0.95017 0.81215 0.95054 1.22422 1.02349 1.01251 0.97192 1.21739 0.97972 1.02362 0.96983 1.86660 1.67648 1.23966 1.57597 1.17154 0.76688 0.85823 0.82498 1.90793 1.46466 1.15499 1.86961 1.19773 1.08921 0.96860 0.86495 1.21483 1.09994 0.98019 0.95695 1.18024 1.03545 0.97067 0.93820 1.20137 0.99644 0.96698 0.93465 1.20352 1.02943 0.99790 0.94570 1.20551 1.00903 0.95197 0.98674 1.20280 1.01608 0.99521 0.91349 1.18438 1.02080 0.94526 0.90850 1.40197 1.33226 1.15878 1.02311 1.19633 1.05352 0.87232 1.33884 0.85161 1.25533 0.95074 0.98421 0.94448 1.69616 1.17589 1.27928 1.31272 0.86951 0.78093 0.83479 0.81610 1.17422 1.17566 1.21201 0.91530 0.91089 0.92776 0.90754 0.87221 0.90791 0.89005 0.91281 0.91678 0.92560 0.91640 0.92845 0.90262 0.78779 0.82223 0.87235 0.87319 0.87004 0.86204 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 8.89 37.16 0.33 -1.68 16 2 C 0.08 1.09 5.40 -4.04 -0.02 1.07 16 3 N -0.60 -9.65 2.13 -175.15 -0.37 -10.02 16 4 C 0.10 1.30 4.76 -4.04 -0.02 1.28 16 5 C 0.11 1.47 1.18 -90.62 -0.11 1.36 16 6 C -0.17 -1.80 8.82 37.16 0.33 -1.47 16 7 C -0.13 -2.31 7.56 37.16 0.28 -2.03 16 8 O -0.55 -6.95 11.85 -35.23 -0.42 -7.37 16 9 C 0.59 12.49 5.68 -12.76 -0.07 12.42 16 10 O -0.52 -12.67 13.42 5.22 0.07 -12.60 16 11 C 0.00 -0.08 6.56 -82.25 -0.54 -0.62 16 12 C -0.23 -4.49 7.72 -39.02 -0.30 -4.79 16 13 C -0.12 -2.56 6.16 -106.89 -0.66 -3.22 16 14 C -0.08 -1.46 10.06 -39.51 -0.40 -1.86 16 15 C -0.16 -2.75 9.97 -39.95 -0.40 -3.15 16 16 C -0.13 -2.55 10.02 -39.50 -0.40 -2.94 16 17 C -0.11 -2.45 6.67 -39.41 -0.26 -2.71 16 18 C 0.05 1.31 4.85 -83.83 -0.41 0.91 16 19 N -0.25 -6.56 2.42 -56.08 -0.14 -6.70 16 20 C -0.33 -9.41 9.30 -15.01 -0.14 -9.55 16 21 H 0.13 4.04 7.26 -52.49 -0.38 3.66 16 22 C 0.08 2.14 5.25 -17.47 -0.09 2.05 16 23 N -0.83 -23.47 13.95 55.50 0.77 -22.70 16 24 Si 0.87 21.44 23.64 -169.99 -4.02 17.42 16 25 H -0.25 -5.71 5.67 56.52 0.32 -5.39 16 26 H -0.25 -6.51 6.74 56.52 0.38 -6.13 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.95 6.63 -51.93 -0.34 0.60 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.80 7.15 -51.93 -0.37 0.42 16 32 H 0.11 1.65 4.53 -51.93 -0.24 1.42 16 33 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.09 1.35 7.36 -51.93 -0.38 0.96 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.36 6.28 -51.93 -0.33 1.04 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.46 7.57 -51.93 -0.39 1.06 16 41 H 0.37 2.91 9.04 45.56 0.41 3.33 16 42 H 0.16 2.53 3.20 -52.48 -0.17 2.36 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 44 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 45 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 46 H 0.12 2.81 5.59 -52.49 -0.29 2.52 16 47 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -32.29 359.77 -7.50 -39.78 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.94 Total: 11.70 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -2.87 Total: -14.93 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.27 Total: -39.42 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.35 Total: -19.97 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.02 Total: 17.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.29 -7.50 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610474074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.310 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds