Wall clock time and date at job start Tue Mar 31 2020 16:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46887 * 2 1 4 4 C 1.46506 * 120.00007 * 267.61527 * 3 2 1 5 5 C 1.53003 * 109.46913 * 269.99932 * 4 3 2 6 6 C 1.53002 * 109.46957 * 184.99759 * 5 4 3 7 7 C 1.52996 * 109.47239 * 305.00346 * 5 4 3 8 8 O 1.42902 * 109.46874 * 65.00313 * 5 4 3 9 9 C 1.34780 * 120.00089 * 87.61769 * 3 2 1 10 10 O 1.21663 * 120.00032 * 185.05663 * 9 3 2 11 11 C 1.46891 * 119.99873 * 5.05581 * 9 3 2 12 12 C 1.36126 * 125.43710 * 340.89277 * 11 9 3 13 13 C 1.41698 * 107.74792 * 180.23683 * 12 11 9 14 14 C 1.40019 * 133.35101 * 179.81283 * 13 12 11 15 15 C 1.36580 * 119.82885 * 179.97438 * 14 13 12 16 16 C 1.38850 * 120.60260 * 0.02562 * 15 14 13 17 17 C 1.37846 * 120.63430 * 359.97438 * 16 15 14 18 18 C 1.39090 * 119.81391 * 0.02562 * 17 16 15 19 19 N 1.37831 * 133.16474 * 180.02562 * 18 17 16 20 20 C 1.36890 * 125.62083 * 359.94499 * 19 18 17 21 21 H 1.07997 * 120.00017 * 226.87913 * 20 19 18 22 22 C 1.39009 * 120.00107 * 46.87945 * 20 19 18 23 23 N 1.31350 * 120.00342 * 188.08357 * 22 20 19 24 24 Si 1.86800 * 119.99896 * 7.80895 * 22 20 19 25 25 H 1.48496 * 109.47320 * 264.23046 * 24 22 20 26 26 H 1.48505 * 109.47271 * 24.22908 * 24 22 20 27 27 H 1.48504 * 109.47369 * 144.22635 * 24 22 20 28 28 H 1.08996 * 109.47162 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46779 * 300.00130 * 1 2 3 30 30 H 1.09000 * 109.47370 * 59.99800 * 1 2 3 31 31 H 1.08999 * 109.47204 * 240.00418 * 2 1 3 32 32 H 1.08992 * 109.47589 * 119.99949 * 2 1 3 33 33 H 1.08992 * 109.46827 * 29.99779 * 4 3 2 34 34 H 1.08996 * 109.46863 * 150.00446 * 4 3 2 35 35 H 1.08997 * 109.46852 * 60.00264 * 6 5 4 36 36 H 1.08994 * 109.47206 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47340 * 300.00443 * 6 5 4 38 38 H 1.08998 * 109.47608 * 60.00346 * 7 5 4 39 39 H 1.09004 * 109.47014 * 180.02562 * 7 5 4 40 40 H 1.08999 * 109.46968 * 299.99180 * 7 5 4 41 41 H 0.96703 * 114.00639 * 59.99728 * 8 5 4 42 42 H 1.08003 * 126.12383 * 0.02562 * 12 11 9 43 43 H 1.07998 * 120.08633 * 359.95009 * 14 13 12 44 44 H 1.08004 * 119.69792 * 180.02562 * 15 14 13 45 45 H 1.07999 * 119.68388 * 179.97438 * 16 15 14 46 46 H 1.07995 * 120.09389 * 180.02562 * 17 16 15 47 47 H 0.96994 * 120.00201 * 179.72698 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3122 2.0543 -1.2677 5 6 3.7734 1.8082 -1.6489 6 6 4.1149 2.6116 -2.9055 7 6 4.6816 2.2489 -0.4992 8 8 3.9708 0.4163 -1.9052 9 6 2.1972 2.0328 1.1662 10 8 2.5139 3.2075 1.1644 11 6 2.0096 1.3247 2.4394 12 6 1.3205 0.1620 2.6018 13 6 1.3719 -0.1823 3.9754 14 6 0.8510 -1.2480 4.7193 15 6 1.0739 -1.3100 6.0654 16 6 1.8132 -0.3243 6.7055 17 6 2.3363 0.7346 5.9946 18 6 2.1226 0.8194 4.6228 19 7 2.5063 1.7315 3.6634 20 6 3.2522 2.8574 3.8867 21 1 2.9443 3.8019 3.4632 22 6 4.4060 2.7849 4.6586 23 7 5.0342 3.8850 5.0057 24 14 5.0589 1.1235 5.2087 25 1 4.5687 0.8279 6.5789 26 1 4.5834 0.0710 4.2751 27 1 6.5437 1.1505 5.2092 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6617 1.6595 -2.0480 34 1 2.1406 3.1252 -1.1588 35 1 3.9642 3.6733 -2.7100 36 1 5.1556 2.4360 -3.1773 37 1 3.4678 2.2976 -3.7245 38 1 4.4384 1.6765 0.3959 39 1 5.7226 2.0740 -0.7710 40 1 4.5311 3.3106 -0.3038 41 1 3.4258 0.0674 -2.6238 42 1 0.8209 -0.3961 1.8237 43 1 0.2741 -2.0189 4.2301 44 1 0.6715 -2.1332 6.6371 45 1 1.9801 -0.3878 7.7706 46 1 2.9103 1.4962 6.5012 47 1 5.8370 3.8347 5.5477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610474074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:05 Heat of formation + Delta-G solvation = -16.666458 kcal Electronic energy + Delta-G solvation = -30204.286866 eV Core-core repulsion = 26352.992382 eV Total energy + Delta-G solvation = -3851.294483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.63897 -40.91732 -38.83975 -37.65478 -37.00190 -35.32746 -33.76732 -33.02885 -31.37501 -30.85666 -30.21698 -28.40196 -27.49270 -26.62247 -24.75988 -23.74437 -22.75666 -21.82034 -21.43611 -20.54232 -19.74052 -17.99447 -17.85050 -17.52125 -17.34902 -16.80590 -16.52900 -16.15319 -15.96953 -15.68864 -15.39410 -15.35367 -14.87272 -14.72658 -14.67813 -14.41230 -13.98446 -13.69911 -13.53993 -13.32832 -13.21068 -13.11896 -12.91727 -12.78092 -12.67536 -12.62885 -12.53662 -12.35835 -12.27447 -12.06376 -11.86777 -11.75509 -11.55167 -11.25733 -11.20659 -10.77473 -10.34868 -9.53072 -9.00562 -8.81051 -8.57407 -6.58341 0.01004 0.90824 1.05289 1.10306 1.24345 1.35343 1.81567 1.96290 2.37629 2.71225 2.75959 3.13844 3.32591 3.62312 3.77875 3.88092 3.99857 4.02689 4.15882 4.28552 4.35520 4.40989 4.47518 4.54756 4.62036 4.65394 4.68807 4.71053 4.78006 4.81553 4.90415 4.94686 4.99045 5.00866 5.05985 5.13839 5.23360 5.25859 5.26479 5.41845 5.46856 5.66428 5.69920 5.79068 5.84928 6.03609 6.11154 6.40348 6.42912 6.81530 6.97601 7.17661 7.31669 8.29573 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.005476 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.439056 B = 5112.351654 C = 6486.412303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.076 3.924 3 N -0.589 5.589 4 C 0.093 3.907 5 C 0.123 3.877 6 C -0.166 4.166 7 C -0.131 4.131 8 O -0.565 6.565 9 C 0.578 3.422 10 O -0.572 6.572 11 C -0.037 4.037 12 C -0.189 4.189 13 C -0.144 4.144 14 C -0.065 4.065 15 C -0.155 4.155 16 C -0.108 4.108 17 C -0.161 4.161 18 C 0.036 3.964 19 N -0.295 5.295 20 C -0.345 4.345 21 H 0.076 0.924 22 C 0.038 3.962 23 N -0.885 5.885 24 Si 0.935 3.065 25 H -0.223 1.223 26 H -0.273 1.273 27 H -0.283 1.283 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.022 0.978 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.391 0.609 42 H 0.206 0.794 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.144 0.856 46 H 0.097 0.903 47 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 -14.093 -12.626 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.045 4.045 3 N -0.321 5.321 4 C -0.030 4.030 5 C 0.081 3.919 6 C -0.224 4.224 7 C -0.188 4.188 8 O -0.373 6.373 9 C 0.369 3.631 10 O -0.452 6.452 11 C -0.151 4.151 12 C -0.214 4.214 13 C -0.148 4.148 14 C -0.084 4.084 15 C -0.174 4.174 16 C -0.128 4.128 17 C -0.181 4.181 18 C -0.076 4.076 19 N 0.039 4.961 20 C -0.473 4.473 21 H 0.094 0.906 22 C -0.169 4.169 23 N -0.518 5.518 24 Si 0.758 3.242 25 H -0.146 1.146 26 H -0.197 1.197 27 H -0.210 1.210 28 H 0.119 0.881 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.241 0.759 42 H 0.222 0.778 43 H 0.175 0.825 44 H 0.177 0.823 45 H 0.162 0.838 46 H 0.115 0.885 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.432 -12.918 -12.035 19.156 hybrid contribution 0.694 0.815 0.271 1.104 sum -6.738 -12.103 -11.764 18.174 Atomic orbital electron populations 1.22345 0.94264 1.04233 1.02431 1.22503 0.95355 0.80977 1.05695 1.47500 1.65334 1.15248 1.03983 1.22345 0.96355 0.98979 0.85290 1.21465 0.93530 0.82361 0.94550 1.22340 1.03194 1.00352 0.96504 1.21647 0.99498 1.00279 0.97395 1.86609 1.68571 1.23082 1.59066 1.17332 0.76587 0.85465 0.83761 1.90763 1.49026 1.17681 1.87742 1.20447 1.09180 0.98652 0.86824 1.22099 1.06863 0.96140 0.96335 1.18573 1.04090 0.97789 0.94397 1.20703 0.98020 0.95825 0.93825 1.20921 1.01538 1.00204 0.94701 1.21100 0.98058 0.93444 1.00174 1.20375 1.05046 1.01409 0.91285 1.19014 1.02380 0.94581 0.91644 1.40169 1.35597 1.16453 1.03868 1.19034 1.06508 0.87029 1.34737 0.90593 1.26130 0.94844 1.01301 0.94609 1.69696 1.18807 1.29552 1.33749 0.86076 0.77106 0.79116 0.81921 1.14621 1.19744 1.21013 0.88117 0.93678 0.91049 0.87096 0.89326 0.85531 0.91083 0.91959 0.91733 0.88810 0.95894 0.92529 0.92795 0.75856 0.77821 0.82464 0.82295 0.83833 0.88490 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 8.89 71.98 0.64 -2.45 16 2 C 0.08 1.73 5.40 86.38 0.47 2.20 16 3 N -0.59 -18.60 2.13 -826.29 -1.76 -20.37 16 4 C 0.09 2.33 4.76 86.38 0.41 2.74 16 5 C 0.12 3.11 1.18 -10.79 -0.01 3.09 16 6 C -0.17 -3.08 8.82 71.98 0.63 -2.45 16 7 C -0.13 -4.88 7.56 71.98 0.54 -4.33 16 8 O -0.56 -12.48 11.85 -148.98 -1.76 -14.25 16 9 C 0.58 26.18 5.68 86.51 0.49 26.67 16 10 O -0.57 -30.92 13.42 -4.23 -0.06 -30.98 16 11 C -0.04 -1.77 6.56 39.91 0.26 -1.51 16 12 C -0.19 -7.28 7.72 22.63 0.17 -7.10 16 13 C -0.14 -5.87 6.16 -21.33 -0.13 -6.00 16 14 C -0.07 -2.03 10.06 22.31 0.22 -1.81 16 15 C -0.15 -4.52 9.97 22.03 0.22 -4.30 16 16 C -0.11 -3.78 10.02 22.32 0.22 -3.56 16 17 C -0.16 -7.35 6.67 22.38 0.15 -7.20 16 18 C 0.04 1.79 4.85 39.06 0.19 1.98 16 19 N -0.30 -16.38 2.42 -331.34 -0.80 -17.19 16 20 C -0.35 -21.71 9.30 84.09 0.78 -20.92 16 21 H 0.08 5.42 7.26 -2.91 -0.02 5.40 16 22 C 0.04 2.30 5.25 84.95 0.45 2.75 16 23 N -0.88 -54.74 13.95 21.67 0.30 -54.44 16 24 Si 0.93 47.54 23.64 68.60 1.62 49.16 16 25 H -0.22 -10.20 5.67 99.48 0.56 -9.64 16 26 H -0.27 -14.53 6.74 99.48 0.67 -13.86 16 27 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.06 6.63 -2.38 -0.02 1.04 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.11 1.78 7.15 -2.39 -0.02 1.76 16 32 H 0.09 2.42 4.53 -2.39 -0.01 2.41 16 33 H 0.13 1.87 8.07 -2.39 -0.02 1.85 16 34 H 0.07 2.13 7.36 -2.39 -0.02 2.11 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.02 1.01 6.28 -2.39 -0.01 1.00 16 39 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 41 H 0.39 4.20 9.04 -74.06 -0.67 3.53 16 42 H 0.21 5.77 3.20 -2.91 -0.01 5.76 16 43 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 44 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 45 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 46 H 0.10 4.76 5.59 -2.91 -0.02 4.75 16 47 H 0.29 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -84.85 359.77 3.41 -81.44 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.15 Total: 28.81 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 5.71 Total: -22.19 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -2.26 Total: -91.99 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.82 Total: -45.23 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.62 Total: 49.16 kcal Total: -84.85 3.41 -81.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610474074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.773 kcal (2) G-P(sol) polarization free energy of solvation -84.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds