Wall clock time and date at job start Tue Mar 31 2020 17:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47008 * 2 1 4 4 C 1.36875 * 120.00043 * 279.52599 * 3 2 1 5 5 H 1.08001 * 119.99869 * 166.00370 * 4 3 2 6 6 C 1.39050 * 119.99967 * 345.99312 * 4 3 2 7 7 N 1.31366 * 119.99701 * 35.19632 * 6 4 3 8 8 Si 1.86793 * 120.00033 * 215.19402 * 6 4 3 9 9 H 1.48494 * 109.47295 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47082 * 120.00333 * 8 6 4 11 11 H 1.48503 * 109.47098 * 239.99862 * 8 6 4 12 12 C 1.34779 * 120.00005 * 99.52255 * 3 2 1 13 13 O 1.21590 * 120.00287 * 186.57933 * 12 3 2 14 14 C 1.47726 * 119.99686 * 6.58268 * 12 3 2 15 15 C 1.39648 * 120.14761 * 144.24505 * 14 12 3 16 16 C 1.37941 * 119.84701 * 180.02562 * 15 14 12 17 17 C 1.38376 * 120.14640 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.84317 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.46720 * 90.00294 * 18 17 16 20 20 C 1.45755 * 117.94686 * 90.00125 * 19 18 17 21 21 C 1.52918 * 110.49152 * 160.92265 * 20 19 18 22 22 C 1.53342 * 108.67207 * 50.75075 * 21 20 19 23 23 C 1.53069 * 108.42955 * 292.47010 * 22 21 20 24 24 C 1.33354 * 117.94993 * 269.73908 * 19 18 17 25 25 O 1.21283 * 118.24135 * 2.22036 * 24 19 18 26 26 C 1.38368 * 120.30894 * 0.24257 * 17 16 15 27 27 C 1.37937 * 120.15465 * 359.48077 * 26 17 16 28 28 H 1.09007 * 109.47223 * 315.31644 * 1 2 3 29 29 H 1.08994 * 109.47342 * 75.31381 * 1 2 3 30 30 H 1.09000 * 109.47041 * 195.31813 * 1 2 3 31 31 H 1.08997 * 109.46703 * 240.00558 * 2 1 3 32 32 H 1.08995 * 109.47230 * 119.99756 * 2 1 3 33 33 H 0.96994 * 119.99547 * 179.97438 * 7 6 4 34 34 H 1.08000 * 120.07999 * 359.97438 * 15 14 12 35 35 H 1.08001 * 119.92399 * 180.02562 * 16 15 14 36 36 H 1.08992 * 109.47100 * 210.00088 * 18 17 16 37 37 H 1.09004 * 109.46885 * 330.00810 * 18 17 16 38 38 H 1.09000 * 109.30377 * 281.23771 * 20 19 18 39 39 H 1.09003 * 109.29750 * 40.81560 * 20 19 18 40 40 H 1.08998 * 109.60533 * 170.50716 * 21 20 19 41 41 H 1.09000 * 109.60102 * 290.83477 * 21 20 19 42 42 H 1.08998 * 109.67423 * 52.20964 * 22 21 20 43 43 H 1.09003 * 109.67500 * 172.69786 * 22 21 20 44 44 H 1.08998 * 109.40025 * 169.02589 * 23 22 21 45 45 H 1.09000 * 109.40062 * 288.85837 * 23 22 21 46 46 H 1.08000 * 119.92684 * 179.72246 * 26 17 16 47 47 H 1.07995 * 120.08508 * 180.23598 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0615 2.0919 -1.1690 5 1 2.2009 3.1626 -1.1452 6 6 1.9260 1.4353 -2.3872 7 7 1.1260 0.3982 -2.4889 8 14 2.8814 2.0278 -3.8790 9 1 3.7060 3.2043 -3.5034 10 1 3.7661 0.9385 -4.3648 11 1 1.9319 2.4112 -4.9546 12 6 2.4250 1.9522 1.1511 13 8 2.7166 3.1324 1.1746 14 6 2.5165 1.1441 2.3844 15 6 3.5351 1.3872 3.3082 16 6 3.6150 0.6285 4.4575 17 6 2.6890 -0.3718 4.6956 18 6 2.7830 -1.1969 5.9532 19 7 2.0029 -0.5579 7.0159 20 6 0.5997 -0.9286 7.1504 21 6 0.0789 -0.5577 8.5395 22 6 0.4349 0.9067 8.8224 23 6 1.9557 1.0181 8.9547 24 6 2.6224 0.3226 7.8029 25 8 3.7854 0.5788 7.5733 26 6 1.6804 -0.6216 3.7819 27 6 1.5853 0.1331 2.6312 28 1 -0.3634 0.7307 0.7227 29 1 -0.3634 0.2605 -0.9940 30 1 -0.3633 -0.9912 0.2715 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.0313 -0.0596 -3.3388 34 1 4.2592 2.1668 3.1230 35 1 4.4020 0.8157 5.1730 36 1 2.3888 -2.1951 5.7632 37 1 3.8258 -1.2707 6.2622 38 1 0.0146 -0.4048 6.3946 39 1 0.4957 -2.0039 7.0052 40 1 -1.0034 -0.6834 8.5698 41 1 0.5428 -1.2005 9.2876 42 1 0.0911 1.5335 7.9996 43 1 -0.0392 1.2270 9.7503 44 1 2.2426 2.0697 8.9609 45 1 2.2734 0.5506 9.8867 46 1 0.9636 -1.4068 3.9718 47 1 0.7954 -0.0603 1.9207 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743892994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:47 Heat of formation + Delta-G solvation = -13.678160 kcal Electronic energy + Delta-G solvation = -28618.801618 eV Core-core repulsion = 24767.636717 eV Total energy + Delta-G solvation = -3851.164901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.72629 -39.49858 -37.62127 -36.60878 -35.20372 -34.52201 -32.28452 -30.92753 -30.54983 -29.85371 -29.40991 -26.91018 -25.03671 -24.47994 -22.74828 -22.35776 -22.02701 -21.40602 -19.37145 -18.71001 -17.00370 -16.85235 -16.61399 -16.36731 -16.18486 -15.43253 -14.88413 -14.63929 -14.51742 -14.26931 -14.15058 -13.92457 -13.71022 -13.52017 -13.43313 -13.31009 -12.59417 -12.38953 -12.23773 -12.06128 -11.99687 -11.69080 -11.59363 -11.36857 -11.31740 -11.25907 -11.18329 -11.02316 -10.83755 -10.44171 -10.37281 -10.23240 -9.92814 -9.75782 -8.87088 -8.72142 -8.49416 -8.45152 -8.14180 -7.90709 -6.56918 -3.76244 1.41350 1.83903 2.56715 2.91512 3.11218 3.24134 3.33483 3.79885 4.06388 4.31778 4.38922 4.41750 4.42945 4.51979 4.77802 4.93584 4.97953 5.01031 5.09501 5.13948 5.21406 5.36266 5.40092 5.42144 5.48883 5.56929 5.58704 5.64387 5.69784 5.84929 5.87361 6.02850 6.15548 6.26176 6.34079 6.45463 6.48883 6.57919 6.62811 6.79310 6.91062 7.02022 7.22989 7.34862 7.37653 7.40546 7.68629 8.07726 8.08533 8.44946 9.12158 9.36156 9.97808 10.43594 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.002787 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.371375 B =10044.771901 C =10499.013998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 N -0.424 5.424 4 C -0.315 4.315 5 H 0.108 0.892 6 C 0.045 3.955 7 N -0.841 5.841 8 Si 0.905 3.095 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.282 1.282 12 C 0.464 3.536 13 O -0.593 6.593 14 C -0.083 4.083 15 C -0.085 4.085 16 C -0.102 4.102 17 C -0.115 4.115 18 C 0.151 3.849 19 N -0.597 5.597 20 C 0.111 3.889 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.133 4.133 24 C 0.515 3.485 25 O -0.550 6.550 26 C -0.117 4.117 27 C -0.123 4.123 28 H 0.032 0.968 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.270 0.730 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 -9.041 19.369 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.032 4.032 3 N -0.140 5.140 4 C -0.441 4.441 5 H 0.126 0.874 6 C -0.161 4.161 7 N -0.478 5.478 8 Si 0.731 3.269 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.208 1.208 12 C 0.255 3.745 13 O -0.480 6.480 14 C -0.087 4.087 15 C -0.105 4.105 16 C -0.121 4.121 17 C -0.117 4.117 18 C 0.030 3.970 19 N -0.329 5.329 20 C -0.012 4.012 21 C -0.173 4.173 22 C -0.163 4.163 23 C -0.173 4.173 24 C 0.304 3.696 25 O -0.428 6.428 26 C -0.136 4.136 27 C -0.141 4.141 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.134 0.866 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.740 -8.478 19.088 21.218 hybrid contribution 0.150 0.064 -0.870 0.885 sum -3.590 -8.414 18.218 20.386 Atomic orbital electron populations 1.22198 0.96470 0.98302 1.04379 1.22242 0.94662 0.84166 1.02144 1.43741 1.51885 1.11778 1.06622 1.19665 1.48506 0.94176 0.81803 0.87409 1.25270 0.95611 0.96040 0.99181 1.70144 1.28984 1.22146 1.26518 0.86229 0.80610 0.79438 0.80660 1.18913 1.20384 1.20842 1.17785 0.86117 0.87534 0.83098 1.90598 1.56690 1.15712 1.85043 1.20328 0.96000 0.96249 0.96149 1.21196 0.97561 0.98687 0.93034 1.21045 0.99080 0.95138 0.96809 1.20064 0.96919 0.98653 0.96075 1.20415 0.97955 0.94290 0.84387 1.47370 1.11125 1.42722 1.31680 1.21451 0.81307 1.00690 0.97783 1.21880 1.01997 0.96969 0.96447 1.21664 0.94757 0.96827 1.03052 1.21645 0.95949 1.02470 0.97256 1.20137 0.86985 0.79050 0.83445 1.90707 1.17553 1.62791 1.71767 1.20858 0.98094 1.00337 0.94273 1.22135 0.99942 0.94789 0.97261 0.94876 0.88188 0.94428 0.88352 0.92293 0.91978 0.85681 0.85577 0.89938 0.88951 0.91291 0.90599 0.89750 0.91029 0.90866 0.90593 0.88221 0.88566 0.86567 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 8.37 37.16 0.31 -2.87 16 2 C 0.09 2.02 4.88 -4.04 -0.02 2.00 16 3 N -0.42 -11.00 2.65 -115.93 -0.31 -11.31 16 4 C -0.31 -8.73 9.24 -15.00 -0.14 -8.87 16 5 H 0.11 3.20 7.42 -52.49 -0.39 2.81 16 6 C 0.04 1.14 5.04 -17.45 -0.09 1.05 16 7 N -0.84 -20.70 8.42 55.50 0.47 -20.24 16 8 Si 0.91 20.09 29.67 -169.99 -5.04 15.05 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.46 12.11 7.34 -12.38 -0.09 12.02 16 13 O -0.59 -17.54 16.46 5.29 0.09 -17.45 16 14 C -0.08 -1.79 5.44 -104.97 -0.57 -2.36 16 15 C -0.09 -1.69 9.62 -39.16 -0.38 -2.07 16 16 C -0.10 -1.73 9.41 -39.64 -0.37 -2.11 16 17 C -0.12 -1.68 5.46 -104.52 -0.57 -2.25 16 18 C 0.15 1.74 5.33 -5.19 -0.03 1.71 16 19 N -0.60 -6.33 2.80 -176.34 -0.49 -6.83 16 20 C 0.11 0.82 6.38 -4.49 -0.03 0.79 16 21 C -0.14 -0.74 6.02 -26.60 -0.16 -0.90 16 22 C -0.13 -0.81 6.03 -26.52 -0.16 -0.97 16 23 C -0.13 -1.12 6.03 -28.11 -0.17 -1.29 16 24 C 0.52 6.27 7.46 -11.88 -0.09 6.18 16 25 O -0.55 -8.81 15.04 5.56 0.08 -8.72 16 26 C -0.12 -1.71 9.68 -39.64 -0.38 -2.10 16 27 C -0.12 -2.22 7.39 -39.17 -0.29 -2.51 16 28 H 0.03 0.67 7.42 -51.93 -0.39 0.29 16 29 H 0.10 2.29 6.07 -51.93 -0.32 1.98 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 2.34 5.84 -51.93 -0.30 2.04 16 32 H 0.06 1.19 4.30 -51.93 -0.22 0.96 16 33 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 34 H 0.13 2.52 8.01 -52.49 -0.42 2.10 16 35 H 0.13 2.10 7.16 -52.49 -0.38 1.73 16 36 H 0.08 0.73 7.80 -51.93 -0.41 0.32 16 37 H 0.09 1.15 7.14 -51.93 -0.37 0.78 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 42 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.15 2.67 3.32 -52.49 -0.17 2.50 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -32.74 369.33 -9.58 -42.32 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.71 Total: 6.15 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -3.22 Total: -4.54 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.33 Total: -38.37 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: 0.17 Total: -26.17 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.04 Total: 15.05 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.74 -9.58 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743892994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.639 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds