Wall clock time and date at job start Tue Mar 31 2020 17:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47008 * 2 1 4 4 C 1.36875 * 120.00043 * 279.52599 * 3 2 1 5 5 H 1.08001 * 119.99869 * 166.00370 * 4 3 2 6 6 C 1.39050 * 119.99967 * 345.99312 * 4 3 2 7 7 N 1.31366 * 119.99701 * 35.19632 * 6 4 3 8 8 Si 1.86793 * 120.00033 * 215.19402 * 6 4 3 9 9 H 1.48494 * 109.47295 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47082 * 120.00333 * 8 6 4 11 11 H 1.48503 * 109.47098 * 239.99862 * 8 6 4 12 12 C 1.34779 * 120.00005 * 99.52255 * 3 2 1 13 13 O 1.21590 * 120.00287 * 186.57933 * 12 3 2 14 14 C 1.47726 * 119.99686 * 6.58268 * 12 3 2 15 15 C 1.39648 * 120.14761 * 144.24505 * 14 12 3 16 16 C 1.37941 * 119.84701 * 180.02562 * 15 14 12 17 17 C 1.38376 * 120.14640 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.84317 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.46720 * 90.00294 * 18 17 16 20 20 C 1.45755 * 117.94686 * 90.00125 * 19 18 17 21 21 C 1.52918 * 110.49152 * 160.92265 * 20 19 18 22 22 C 1.53342 * 108.67207 * 50.75075 * 21 20 19 23 23 C 1.53069 * 108.42955 * 292.47010 * 22 21 20 24 24 C 1.33354 * 117.94993 * 269.73908 * 19 18 17 25 25 O 1.21283 * 118.24135 * 2.22036 * 24 19 18 26 26 C 1.38368 * 120.30894 * 0.24257 * 17 16 15 27 27 C 1.37937 * 120.15465 * 359.48077 * 26 17 16 28 28 H 1.09007 * 109.47223 * 315.31644 * 1 2 3 29 29 H 1.08994 * 109.47342 * 75.31381 * 1 2 3 30 30 H 1.09000 * 109.47041 * 195.31813 * 1 2 3 31 31 H 1.08997 * 109.46703 * 240.00558 * 2 1 3 32 32 H 1.08995 * 109.47230 * 119.99756 * 2 1 3 33 33 H 0.96994 * 119.99547 * 179.97438 * 7 6 4 34 34 H 1.08000 * 120.07999 * 359.97438 * 15 14 12 35 35 H 1.08001 * 119.92399 * 180.02562 * 16 15 14 36 36 H 1.08992 * 109.47100 * 210.00088 * 18 17 16 37 37 H 1.09004 * 109.46885 * 330.00810 * 18 17 16 38 38 H 1.09000 * 109.30377 * 281.23771 * 20 19 18 39 39 H 1.09003 * 109.29750 * 40.81560 * 20 19 18 40 40 H 1.08998 * 109.60533 * 170.50716 * 21 20 19 41 41 H 1.09000 * 109.60102 * 290.83477 * 21 20 19 42 42 H 1.08998 * 109.67423 * 52.20964 * 22 21 20 43 43 H 1.09003 * 109.67500 * 172.69786 * 22 21 20 44 44 H 1.08998 * 109.40025 * 169.02589 * 23 22 21 45 45 H 1.09000 * 109.40062 * 288.85837 * 23 22 21 46 46 H 1.08000 * 119.92684 * 179.72246 * 26 17 16 47 47 H 1.07995 * 120.08508 * 180.23598 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0615 2.0919 -1.1690 5 1 2.2009 3.1626 -1.1452 6 6 1.9260 1.4353 -2.3872 7 7 1.1260 0.3982 -2.4889 8 14 2.8814 2.0278 -3.8790 9 1 3.7060 3.2043 -3.5034 10 1 3.7661 0.9385 -4.3648 11 1 1.9319 2.4112 -4.9546 12 6 2.4250 1.9522 1.1511 13 8 2.7166 3.1324 1.1746 14 6 2.5165 1.1441 2.3844 15 6 3.5351 1.3872 3.3082 16 6 3.6150 0.6285 4.4575 17 6 2.6890 -0.3718 4.6956 18 6 2.7830 -1.1969 5.9532 19 7 2.0029 -0.5579 7.0159 20 6 0.5997 -0.9286 7.1504 21 6 0.0789 -0.5577 8.5395 22 6 0.4349 0.9067 8.8224 23 6 1.9557 1.0181 8.9547 24 6 2.6224 0.3226 7.8029 25 8 3.7854 0.5788 7.5733 26 6 1.6804 -0.6216 3.7819 27 6 1.5853 0.1331 2.6312 28 1 -0.3634 0.7307 0.7227 29 1 -0.3634 0.2605 -0.9940 30 1 -0.3633 -0.9912 0.2715 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.0313 -0.0596 -3.3388 34 1 4.2592 2.1668 3.1230 35 1 4.4020 0.8157 5.1730 36 1 2.3888 -2.1951 5.7632 37 1 3.8258 -1.2707 6.2622 38 1 0.0146 -0.4048 6.3946 39 1 0.4957 -2.0039 7.0052 40 1 -1.0034 -0.6834 8.5698 41 1 0.5428 -1.2005 9.2876 42 1 0.0911 1.5335 7.9996 43 1 -0.0392 1.2270 9.7503 44 1 2.2426 2.0697 8.9609 45 1 2.2734 0.5506 9.8867 46 1 0.9636 -1.4068 3.9718 47 1 0.7954 -0.0603 1.9207 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743892994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:46 Heat of formation + Delta-G solvation = -32.822718 kcal Electronic energy + Delta-G solvation = -28619.631788 eV Core-core repulsion = 24767.636717 eV Total energy + Delta-G solvation = -3851.995071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.68105 -41.08678 -39.19979 -37.41873 -37.19666 -35.42782 -34.11350 -32.27484 -32.07722 -31.11561 -30.50625 -28.21142 -26.66953 -25.25712 -24.13904 -23.72366 -23.33422 -22.60594 -21.07873 -19.43223 -18.92548 -18.20302 -17.77089 -17.40215 -17.25475 -16.85056 -16.32667 -16.21504 -16.01293 -15.61710 -15.20592 -15.11422 -14.96201 -14.74676 -14.48706 -14.23815 -14.10249 -13.96836 -13.92785 -13.27664 -13.11292 -12.98127 -12.92866 -12.71517 -12.67284 -12.58817 -12.21955 -12.15663 -12.05376 -11.85590 -11.76313 -11.73161 -11.63981 -10.69948 -10.67828 -10.46736 -10.00181 -9.78989 -9.70896 -9.60805 -8.54193 -5.84117 -0.01847 0.43921 1.29677 1.39491 1.52032 1.66411 1.92018 2.21185 2.23284 2.78385 2.91208 3.10983 3.64724 3.78068 3.87022 3.94273 3.95328 3.98803 4.00131 4.05252 4.32610 4.36966 4.50992 4.52894 4.59496 4.69368 4.72201 4.73367 4.77153 4.82165 4.92028 4.94745 4.96878 5.06473 5.10211 5.13924 5.16476 5.32284 5.37550 5.40734 5.47443 5.49382 5.54100 5.58892 5.91130 5.98014 6.03819 6.47241 6.53165 7.10431 7.21253 7.38327 7.99932 8.44827 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.002787 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.371375 B =10044.771901 C =10499.013998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.092 3.908 3 N -0.430 5.430 4 C -0.370 4.370 5 H 0.068 0.932 6 C 0.027 3.973 7 N -0.835 5.835 8 Si 0.967 3.033 9 H -0.285 1.285 10 H -0.263 1.263 11 H -0.267 1.267 12 C 0.446 3.554 13 O -0.651 6.651 14 C -0.113 4.113 15 C -0.102 4.102 16 C -0.103 4.103 17 C -0.096 4.096 18 C 0.151 3.849 19 N -0.594 5.594 20 C 0.101 3.899 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.131 4.131 24 C 0.503 3.497 25 O -0.600 6.600 26 C -0.095 4.095 27 C -0.122 4.122 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.281 0.719 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.115 0.885 46 H 0.169 0.831 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.629 -13.060 20.960 25.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 N -0.145 5.145 4 C -0.496 4.496 5 H 0.086 0.914 6 C -0.180 4.180 7 N -0.470 5.470 8 Si 0.790 3.210 9 H -0.211 1.211 10 H -0.187 1.187 11 H -0.192 1.192 12 C 0.237 3.763 13 O -0.542 6.542 14 C -0.117 4.117 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.097 4.097 18 C 0.029 3.971 19 N -0.324 5.324 20 C -0.021 4.021 21 C -0.167 4.167 22 C -0.160 4.160 23 C -0.171 4.171 24 C 0.293 3.707 25 O -0.481 6.481 26 C -0.113 4.113 27 C -0.141 4.141 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.133 0.867 46 H 0.187 0.813 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.061 -12.569 20.669 24.939 hybrid contribution 0.817 1.248 -1.293 1.974 sum -5.244 -11.321 19.377 23.046 Atomic orbital electron populations 1.22047 0.94843 1.00566 1.02738 1.22370 0.95916 0.82195 1.02519 1.43929 1.51568 1.12910 1.06067 1.19415 1.53123 0.93242 0.83826 0.91384 1.25834 0.95170 0.96379 1.00626 1.70161 1.27425 1.21644 1.27724 0.85340 0.79255 0.78629 0.77757 1.21059 1.18721 1.19172 1.18600 0.85520 0.87501 0.84632 1.90523 1.59100 1.18341 1.86279 1.20041 0.98599 0.98165 0.94887 1.21106 0.97514 0.99276 0.94294 1.21083 0.99992 0.95619 0.95481 1.20501 0.95100 0.96988 0.97150 1.20497 0.98304 0.95492 0.82856 1.47480 1.12452 1.41908 1.30589 1.21789 0.78931 1.02436 0.98931 1.21895 1.03356 0.95934 0.95517 1.21674 0.92970 0.97763 1.03609 1.21677 0.97357 1.01590 0.96463 1.20867 0.86609 0.78960 0.84263 1.90689 1.19793 1.64419 1.73248 1.21295 0.98131 0.99954 0.91947 1.22183 0.98952 0.94124 0.98829 0.95478 0.90794 0.90060 0.89943 0.89791 0.90789 0.88018 0.85771 0.85605 0.90176 0.91685 0.87690 0.87542 0.90031 0.92352 0.88484 0.89173 0.86736 0.81310 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 8.37 71.98 0.60 -5.10 16 2 C 0.09 4.07 4.88 86.38 0.42 4.49 16 3 N -0.43 -23.42 2.65 -638.94 -1.69 -25.11 16 4 C -0.37 -21.74 9.24 84.10 0.78 -20.96 16 5 H 0.07 4.44 7.42 -2.91 -0.02 4.41 16 6 C 0.03 1.41 5.04 84.96 0.43 1.84 16 7 N -0.83 -40.74 8.42 21.68 0.18 -40.55 16 8 Si 0.97 41.92 29.67 68.60 2.04 43.96 16 9 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 11 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 12 C 0.45 24.88 7.34 86.75 0.64 25.52 16 13 O -0.65 -42.12 16.46 -4.00 -0.07 -42.18 16 14 C -0.11 -5.06 5.44 -20.09 -0.11 -5.16 16 15 C -0.10 -4.30 9.62 22.54 0.22 -4.08 16 16 C -0.10 -3.53 9.41 22.23 0.21 -3.32 16 17 C -0.10 -2.54 5.46 -19.80 -0.11 -2.65 16 18 C 0.15 2.90 5.33 85.63 0.46 3.36 16 19 N -0.59 -10.64 2.80 -831.00 -2.32 -12.96 16 20 C 0.10 1.00 6.38 86.49 0.55 1.55 16 21 C -0.13 -0.83 6.02 30.68 0.18 -0.65 16 22 C -0.12 -1.21 6.03 30.73 0.19 -1.02 16 23 C -0.13 -1.99 6.03 29.70 0.18 -1.81 16 24 C 0.50 11.52 7.46 87.71 0.65 12.17 16 25 O -0.60 -19.26 15.04 -3.04 -0.05 -19.30 16 26 C -0.10 -2.40 9.68 22.23 0.22 -2.18 16 27 C -0.12 -4.23 7.39 22.54 0.17 -4.06 16 28 H 0.03 1.08 7.42 -2.38 -0.02 1.06 16 29 H 0.07 3.34 6.07 -2.39 -0.01 3.32 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.08 3.90 5.84 -2.39 -0.01 3.89 16 32 H 0.08 3.28 4.30 -2.39 -0.01 3.27 16 33 H 0.28 12.54 8.31 -92.71 -0.77 11.76 16 34 H 0.10 4.59 8.01 -2.91 -0.02 4.57 16 35 H 0.12 4.30 7.16 -2.91 -0.02 4.28 16 36 H 0.13 1.41 7.80 -2.39 -0.02 1.39 16 37 H 0.08 1.82 7.14 -2.38 -0.02 1.80 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.10 0.50 7.92 -2.39 -0.02 0.48 16 40 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.08 0.42 8.13 -2.39 -0.02 0.40 16 42 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 43 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 47 H 0.15 5.13 3.32 -2.91 -0.01 5.12 16 Total: -1.00 -79.88 369.33 4.75 -75.13 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.99 Total: 23.10 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.67 Total: -2.07 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -3.83 Total: -78.63 kcal Atomic # 8 Polarization: -61.38 SS G_CDS: -0.11 Total: -61.49 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.04 Total: 43.96 kcal Total: -79.88 4.75 -75.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743892994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.309 kcal (2) G-P(sol) polarization free energy of solvation -79.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds