Wall clock time and date at job start Tue Mar 31 2020 15:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08989 * 109.47518 * 2 1 4 4 C 1.50703 * 109.47400 * 120.00158 * 2 1 3 5 5 H 1.08001 * 120.00133 * 119.99538 * 4 2 1 6 6 C 1.37874 * 120.00058 * 300.00012 * 4 2 1 7 7 N 1.31519 * 120.00371 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99813 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47355 * 89.99943 * 8 6 4 10 10 H 1.48502 * 109.47406 * 209.99971 * 8 6 4 11 11 H 1.48503 * 109.47102 * 329.99875 * 8 6 4 12 12 N 1.46505 * 109.47050 * 239.99765 * 2 1 3 13 13 C 1.34777 * 119.99553 * 85.00217 * 12 2 1 14 14 O 1.21552 * 120.00298 * 0.02562 * 13 12 2 15 15 C 1.47845 * 120.00012 * 179.97438 * 13 12 2 16 16 C 1.39571 * 120.14594 * 179.97438 * 15 13 12 17 17 C 1.37956 * 119.85308 * 180.02562 * 16 15 13 18 18 C 1.38361 * 120.14496 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.85111 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.47014 * 90.00243 * 19 18 17 21 21 C 1.45756 * 117.94504 * 89.99568 * 20 19 18 22 22 C 1.52919 * 110.48482 * 160.92521 * 21 20 19 23 23 C 1.53347 * 108.67482 * 50.75310 * 22 21 20 24 24 C 1.53069 * 108.42379 * 292.46800 * 23 22 21 25 25 C 1.33347 * 117.94542 * 269.73387 * 20 19 18 26 26 O 1.21285 * 118.24986 * 2.22756 * 25 20 19 27 27 C 1.38356 * 120.29417 * 0.23278 * 18 17 16 28 28 C 1.37960 * 120.14290 * 359.48864 * 27 18 17 29 29 H 1.09001 * 109.47077 * 299.99849 * 1 2 3 30 30 H 1.08994 * 109.47162 * 59.99878 * 1 2 3 31 31 H 1.09000 * 109.47084 * 179.97438 * 1 2 3 32 32 H 0.96993 * 119.99946 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00523 * 264.99678 * 12 2 1 34 34 H 1.08003 * 120.07690 * 0.02562 * 16 15 13 35 35 H 1.08001 * 119.92660 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.46646 * 209.99569 * 19 18 17 37 37 H 1.09000 * 109.47248 * 330.00286 * 19 18 17 38 38 H 1.09000 * 109.30024 * 281.23507 * 21 20 19 39 39 H 1.08997 * 109.29791 * 40.82390 * 21 20 19 40 40 H 1.09001 * 109.60327 * 170.51316 * 22 21 20 41 41 H 1.09008 * 109.60465 * 290.83606 * 22 21 20 42 42 H 1.09002 * 109.67182 * 52.20279 * 23 22 21 43 43 H 1.09002 * 109.67220 * 172.70128 * 23 22 21 44 44 H 1.09006 * 109.39850 * 169.03041 * 24 23 22 45 45 H 1.09001 * 109.40484 * 288.85716 * 24 23 22 46 46 H 1.07994 * 119.92715 * 179.74290 * 27 18 17 47 47 H 1.07998 * 120.07313 * 180.24959 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8597 3.5566 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8584 1.1612 -2.4116 15 6 2.6403 -0.7150 -3.5642 16 6 2.7743 -0.0218 -4.7681 17 6 3.2347 -0.6781 -5.8909 18 6 3.5628 -2.0206 -5.8253 19 6 4.0646 -2.7311 -7.0560 20 7 5.5247 -2.6278 -7.1184 21 6 6.3114 -3.6717 -6.4736 22 6 7.7404 -3.6784 -7.0182 23 6 8.2991 -2.2520 -6.9484 24 6 7.5273 -1.3810 -7.9427 25 6 6.0505 -1.5875 -7.7660 26 8 5.2957 -0.7610 -8.2332 27 6 3.4273 -2.7150 -4.6363 28 6 2.9735 -2.0692 -3.5048 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9027 -0.5285 4.4375 33 1 2.2490 -1.6318 -1.1527 34 1 2.5181 1.0261 -4.8207 35 1 3.3392 -0.1427 -6.8230 36 1 3.7763 -3.7814 -7.0121 37 1 3.6297 -2.2716 -7.9436 38 1 6.3363 -3.4922 -5.3988 39 1 5.8511 -4.6407 -6.6665 40 1 8.3585 -4.3433 -6.4149 41 1 7.7359 -4.0217 -8.0528 42 1 8.1732 -1.8576 -5.9401 43 1 9.3572 -2.2592 -7.2102 44 1 7.7720 -0.3326 -7.7715 45 1 7.8074 -1.6569 -8.9593 46 1 3.6812 -3.7637 -4.5929 47 1 2.8719 -2.6114 -2.5763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751393286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:06 Heat of formation + Delta-G solvation = -48.313105 kcal Electronic energy + Delta-G solvation = -27740.364357 eV Core-core repulsion = 23887.697572 eV Total energy + Delta-G solvation = -3852.666785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93777 -39.73785 -38.14273 -36.78365 -35.07238 -34.72796 -32.54319 -31.57761 -30.95505 -30.07126 -29.59749 -26.91006 -25.19907 -24.79022 -23.24133 -22.53708 -22.28480 -20.87688 -19.61018 -18.88783 -18.01200 -17.05425 -16.73987 -16.54363 -16.15609 -15.71976 -15.28034 -15.03542 -14.67315 -14.52093 -14.30784 -14.25300 -14.04647 -13.73772 -13.63163 -13.49532 -12.98671 -12.89301 -12.39028 -12.32569 -12.19997 -12.16385 -11.93804 -11.78055 -11.56469 -11.41653 -11.33621 -11.26972 -10.97746 -10.81885 -10.18931 -9.97919 -9.72891 -9.25774 -9.24389 -9.06752 -8.94699 -8.80000 -8.75093 -8.15203 -6.21973 -4.24609 0.89074 1.41435 2.37828 2.67050 3.23340 3.30391 3.35514 3.40681 3.90933 4.10428 4.16497 4.26412 4.28993 4.31428 4.38041 4.60689 4.69332 4.93145 4.95520 4.95868 5.00836 5.08251 5.13094 5.28143 5.29339 5.33654 5.36808 5.45160 5.45873 5.49539 5.64632 5.73032 5.84891 6.00982 6.07175 6.29553 6.31902 6.37570 6.50199 6.50501 6.56023 6.86207 6.90793 7.14508 7.19393 7.27282 7.50487 7.89073 8.13837 8.50292 8.74110 8.90151 9.38886 10.90161 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.002421 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.126639 B =11561.731460 C =12072.001092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.694 5.694 13 C 0.543 3.457 14 O -0.552 6.552 15 C -0.117 4.117 16 C -0.068 4.068 17 C -0.104 4.104 18 C -0.095 4.095 19 C 0.147 3.853 20 N -0.598 5.598 21 C 0.110 3.890 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.134 4.134 25 C 0.517 3.483 26 O -0.550 6.550 27 C -0.115 4.115 28 C -0.091 4.091 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.267 0.733 33 H 0.394 0.606 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.124 0.876 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.572 -9.736 -23.708 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.342 5.342 13 C 0.329 3.671 14 O -0.432 6.432 15 C -0.120 4.120 16 C -0.087 4.087 17 C -0.122 4.122 18 C -0.096 4.096 19 C 0.025 3.975 20 N -0.330 5.330 21 C -0.013 4.013 22 C -0.173 4.173 23 C -0.163 4.163 24 C -0.174 4.174 25 C 0.305 3.695 26 O -0.428 6.428 27 C -0.134 4.134 28 C -0.110 4.110 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.229 0.771 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.142 0.858 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.009 -8.481 -23.744 27.127 hybrid contribution -0.446 0.148 0.502 0.688 sum 9.563 -8.333 -23.242 26.478 Atomic orbital electron populations 1.22448 0.99183 1.00917 0.99396 1.19137 0.90230 0.94747 0.82642 0.93243 1.21025 1.33315 1.14441 0.88523 0.90206 1.24824 0.95476 0.96717 0.95491 1.69866 1.44902 1.40125 0.98045 0.86875 0.80525 0.83614 0.77487 1.20257 1.22124 1.18607 1.46146 1.64625 1.13810 1.09662 1.18305 0.78643 0.86742 0.83419 1.90719 1.51592 1.15671 1.85200 1.20270 1.02470 0.94387 0.94889 1.21319 0.95725 1.00526 0.91091 1.21172 0.98233 0.93970 0.98862 1.20252 0.99365 0.94696 0.95328 1.20462 0.79939 1.00390 0.96698 1.47359 1.06632 1.24815 1.54195 1.21480 0.91587 0.90615 0.97588 1.21887 0.95206 0.97803 1.02452 1.21671 1.00038 0.94606 1.00027 1.21654 0.91004 1.02920 1.01774 1.20180 0.91369 0.80567 0.77361 1.90710 1.60706 1.42046 1.49350 1.20909 1.00615 0.99729 0.92125 1.21365 0.97251 0.93626 0.98725 0.93373 0.94464 0.92772 0.92265 0.77117 0.84777 0.84933 0.89564 0.88619 0.91227 0.90486 0.89605 0.90960 0.90841 0.90459 0.88130 0.88439 0.85814 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 8.96 37.15 0.33 -3.35 16 2 C 0.24 5.75 2.15 -69.08 -0.15 5.60 16 3 H 0.05 1.33 6.63 -51.93 -0.34 0.99 16 4 C -0.54 -14.57 9.31 -34.44 -0.32 -14.89 16 5 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 8 Si 0.89 21.96 24.37 -169.99 -4.14 17.81 16 9 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 12 N -0.69 -14.35 5.02 -55.88 -0.28 -14.63 16 13 C 0.54 11.06 7.74 -12.33 -0.10 10.97 16 14 O -0.55 -13.15 16.01 5.32 0.09 -13.06 16 15 C -0.12 -1.91 5.87 -104.97 -0.62 -2.52 16 16 C -0.07 -1.04 9.60 -39.19 -0.38 -1.41 16 17 C -0.10 -1.38 9.41 -39.64 -0.37 -1.75 16 18 C -0.09 -1.06 5.46 -104.53 -0.57 -1.63 16 19 C 0.15 1.28 5.33 -5.19 -0.03 1.26 16 20 N -0.60 -4.98 2.80 -176.34 -0.49 -5.47 16 21 C 0.11 0.60 6.38 -4.48 -0.03 0.57 16 22 C -0.14 -0.55 6.02 -26.59 -0.16 -0.71 16 23 C -0.13 -0.63 6.04 -26.52 -0.16 -0.79 16 24 C -0.13 -0.91 6.03 -28.11 -0.17 -1.08 16 25 C 0.52 5.22 7.46 -11.88 -0.09 5.14 16 26 O -0.55 -7.61 15.04 5.55 0.08 -7.53 16 27 C -0.12 -1.23 9.68 -39.64 -0.38 -1.62 16 28 C -0.09 -1.20 9.54 -39.18 -0.37 -1.57 16 29 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 33 H 0.39 7.10 6.57 -40.82 -0.27 6.83 16 34 H 0.13 2.13 7.65 -52.48 -0.40 1.72 16 35 H 0.13 1.76 7.16 -52.49 -0.38 1.39 16 36 H 0.09 0.53 7.80 -51.93 -0.41 0.12 16 37 H 0.10 0.94 7.14 -51.93 -0.37 0.57 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.29 7.92 -51.93 -0.41 -0.12 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.27 8.13 -51.92 -0.42 -0.16 16 42 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.13 1.54 6.41 -52.49 -0.34 1.20 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -34.67 376.28 -8.87 -43.54 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.91 Total: 5.01 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -3.66 Total: -5.66 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.00 Total: -45.78 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.17 Total: -20.59 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.67 -8.87 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751393286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.777 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds