Wall clock time and date at job start Tue Mar 31 2020 15:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08989 * 109.47518 * 2 1 4 4 C 1.50703 * 109.47400 * 120.00158 * 2 1 3 5 5 H 1.08001 * 120.00133 * 119.99538 * 4 2 1 6 6 C 1.37874 * 120.00058 * 300.00012 * 4 2 1 7 7 N 1.31519 * 120.00371 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99813 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47355 * 89.99943 * 8 6 4 10 10 H 1.48502 * 109.47406 * 209.99971 * 8 6 4 11 11 H 1.48503 * 109.47102 * 329.99875 * 8 6 4 12 12 N 1.46505 * 109.47050 * 239.99765 * 2 1 3 13 13 C 1.34777 * 119.99553 * 85.00217 * 12 2 1 14 14 O 1.21552 * 120.00298 * 0.02562 * 13 12 2 15 15 C 1.47845 * 120.00012 * 179.97438 * 13 12 2 16 16 C 1.39571 * 120.14594 * 179.97438 * 15 13 12 17 17 C 1.37956 * 119.85308 * 180.02562 * 16 15 13 18 18 C 1.38361 * 120.14496 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.85111 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.47014 * 90.00243 * 19 18 17 21 21 C 1.45756 * 117.94504 * 89.99568 * 20 19 18 22 22 C 1.52919 * 110.48482 * 160.92521 * 21 20 19 23 23 C 1.53347 * 108.67482 * 50.75310 * 22 21 20 24 24 C 1.53069 * 108.42379 * 292.46800 * 23 22 21 25 25 C 1.33347 * 117.94542 * 269.73387 * 20 19 18 26 26 O 1.21285 * 118.24986 * 2.22756 * 25 20 19 27 27 C 1.38356 * 120.29417 * 0.23278 * 18 17 16 28 28 C 1.37960 * 120.14290 * 359.48864 * 27 18 17 29 29 H 1.09001 * 109.47077 * 299.99849 * 1 2 3 30 30 H 1.08994 * 109.47162 * 59.99878 * 1 2 3 31 31 H 1.09000 * 109.47084 * 179.97438 * 1 2 3 32 32 H 0.96993 * 119.99946 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00523 * 264.99678 * 12 2 1 34 34 H 1.08003 * 120.07690 * 0.02562 * 16 15 13 35 35 H 1.08001 * 119.92660 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.46646 * 209.99569 * 19 18 17 37 37 H 1.09000 * 109.47248 * 330.00286 * 19 18 17 38 38 H 1.09000 * 109.30024 * 281.23507 * 21 20 19 39 39 H 1.08997 * 109.29791 * 40.82390 * 21 20 19 40 40 H 1.09001 * 109.60327 * 170.51316 * 22 21 20 41 41 H 1.09008 * 109.60465 * 290.83606 * 22 21 20 42 42 H 1.09002 * 109.67182 * 52.20279 * 23 22 21 43 43 H 1.09002 * 109.67220 * 172.70128 * 23 22 21 44 44 H 1.09006 * 109.39850 * 169.03041 * 24 23 22 45 45 H 1.09001 * 109.40484 * 288.85716 * 24 23 22 46 46 H 1.07994 * 119.92715 * 179.74290 * 27 18 17 47 47 H 1.07998 * 120.07313 * 180.24959 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8597 3.5566 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8584 1.1612 -2.4116 15 6 2.6403 -0.7150 -3.5642 16 6 2.7743 -0.0218 -4.7681 17 6 3.2347 -0.6781 -5.8909 18 6 3.5628 -2.0206 -5.8253 19 6 4.0646 -2.7311 -7.0560 20 7 5.5247 -2.6278 -7.1184 21 6 6.3114 -3.6717 -6.4736 22 6 7.7404 -3.6784 -7.0182 23 6 8.2991 -2.2520 -6.9484 24 6 7.5273 -1.3810 -7.9427 25 6 6.0505 -1.5875 -7.7660 26 8 5.2957 -0.7610 -8.2332 27 6 3.4273 -2.7150 -4.6363 28 6 2.9735 -2.0692 -3.5048 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9027 -0.5285 4.4375 33 1 2.2490 -1.6318 -1.1527 34 1 2.5181 1.0261 -4.8207 35 1 3.3392 -0.1427 -6.8230 36 1 3.7763 -3.7814 -7.0121 37 1 3.6297 -2.2716 -7.9436 38 1 6.3363 -3.4922 -5.3988 39 1 5.8511 -4.6407 -6.6665 40 1 8.3585 -4.3433 -6.4149 41 1 7.7359 -4.0217 -8.0528 42 1 8.1732 -1.8576 -5.9401 43 1 9.3572 -2.2592 -7.2102 44 1 7.7720 -0.3326 -7.7715 45 1 7.8074 -1.6569 -8.9593 46 1 3.6812 -3.7637 -4.5929 47 1 2.8719 -2.6114 -2.5763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751393286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:05 Heat of formation + Delta-G solvation = -71.231995 kcal Electronic energy + Delta-G solvation = -27741.358195 eV Core-core repulsion = 23887.697572 eV Total energy + Delta-G solvation = -3853.660623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69376 -41.08187 -39.43881 -37.44475 -36.91995 -35.45037 -34.49020 -32.83609 -32.03856 -31.27235 -30.50398 -27.82912 -27.24309 -25.35294 -24.39147 -23.57369 -23.10560 -22.30962 -21.23216 -19.64148 -19.41252 -18.27094 -17.67341 -17.57841 -17.28959 -17.11484 -16.61748 -16.08641 -15.97663 -15.68828 -15.50109 -15.15765 -14.97951 -14.88333 -14.55550 -14.47053 -14.30479 -14.17301 -14.14853 -13.72380 -13.45132 -13.16956 -13.00191 -12.90950 -12.81057 -12.65239 -12.18503 -12.09697 -11.99198 -11.80289 -11.74862 -11.65462 -11.32225 -10.96025 -10.88239 -10.72708 -10.09220 -9.99414 -9.80297 -9.68884 -8.40492 -6.46453 -0.24781 0.37370 1.25431 1.34065 1.43556 1.62479 1.76782 2.20158 2.24235 2.32243 2.88551 2.96170 3.61373 3.64784 3.80262 3.88967 3.91872 3.94527 3.97017 3.99193 4.24860 4.37938 4.41166 4.50927 4.51680 4.55066 4.62708 4.65746 4.69609 4.69996 4.82248 4.91273 4.94517 4.95335 5.02049 5.13059 5.15797 5.25428 5.26034 5.37826 5.38964 5.40053 5.46115 5.52091 5.55929 5.87703 6.10811 6.49292 6.53691 6.76943 7.14890 7.17983 7.32868 8.74512 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.002421 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.126639 B =11561.731460 C =12072.001092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.021 0.979 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.033 3.967 7 N -0.930 5.930 8 Si 0.935 3.065 9 H -0.257 1.257 10 H -0.290 1.290 11 H -0.266 1.266 12 N -0.691 5.691 13 C 0.542 3.458 14 O -0.595 6.595 15 C -0.142 4.142 16 C -0.081 4.081 17 C -0.110 4.110 18 C -0.080 4.080 19 C 0.146 3.854 20 N -0.594 5.594 21 C 0.101 3.899 22 C -0.131 4.131 23 C -0.123 4.123 24 C -0.132 4.132 25 C 0.505 3.495 26 O -0.598 6.598 27 C -0.099 4.099 28 C -0.086 4.086 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.271 0.729 33 H 0.408 0.592 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.170 0.830 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.279 -12.644 -25.017 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.136 3.864 3 H 0.039 0.961 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.168 4.168 7 N -0.569 5.569 8 Si 0.763 3.237 9 H -0.183 1.183 10 H -0.218 1.218 11 H -0.191 1.191 12 N -0.340 5.340 13 C 0.331 3.669 14 O -0.478 6.478 15 C -0.145 4.145 16 C -0.100 4.100 17 C -0.129 4.129 18 C -0.081 4.081 19 C 0.023 3.977 20 N -0.324 5.324 21 C -0.020 4.020 22 C -0.169 4.169 23 C -0.160 4.160 24 C -0.172 4.172 25 C 0.295 3.705 26 O -0.480 6.480 27 C -0.117 4.117 28 C -0.105 4.105 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.245 0.755 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.131 0.869 46 H 0.187 0.813 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.734 -11.450 -25.052 29.562 hybrid contribution -0.555 0.973 0.802 1.377 sum 10.179 -10.478 -24.249 28.310 Atomic orbital electron populations 1.22347 0.97638 1.01919 0.99449 1.18823 0.91387 0.93171 0.83053 0.96135 1.21203 1.32559 1.13721 0.89672 0.92109 1.25499 0.96744 0.99181 0.95332 1.69957 1.46485 1.41798 0.98643 0.86056 0.80007 0.80484 0.77163 1.18293 1.21758 1.19133 1.45938 1.64828 1.14375 1.08866 1.18900 0.77503 0.86307 0.84192 1.90683 1.53497 1.17690 1.85957 1.19961 1.05542 0.95887 0.93121 1.21226 0.96931 0.99982 0.91834 1.21169 0.98678 0.95272 0.97763 1.20606 0.97141 0.93655 0.96735 1.20561 0.80319 1.02119 0.94669 1.47468 1.06676 1.24889 1.53415 1.21786 0.92297 0.90689 0.97235 1.21901 0.94499 0.97181 1.03293 1.21673 1.00831 0.94952 0.98582 1.21682 0.89161 1.02999 1.03338 1.20819 0.92465 0.80333 0.76881 1.90690 1.61977 1.43834 1.51490 1.21314 0.98406 1.01542 0.90449 1.21576 0.96399 0.92122 1.00380 0.93825 0.93844 0.91265 0.91931 0.75529 0.86693 0.85605 0.85567 0.90033 0.91377 0.87744 0.87678 0.90181 0.92136 0.88716 0.89054 0.86911 0.81263 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.98 8.96 71.98 0.65 -6.34 16 2 C 0.24 11.81 2.15 44.24 0.10 11.90 16 3 H 0.02 1.14 6.63 -2.39 -0.02 1.13 16 4 C -0.53 -29.28 9.31 25.60 0.24 -29.04 16 5 H 0.06 3.50 7.98 -2.91 -0.02 3.47 16 6 C 0.03 1.85 5.45 84.65 0.46 2.31 16 7 N -0.93 -55.49 13.96 21.45 0.30 -55.19 16 8 Si 0.94 45.18 24.37 68.60 1.67 46.85 16 9 H -0.26 -11.62 6.87 99.48 0.68 -10.93 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.27 -13.01 6.53 99.48 0.65 -12.36 16 12 N -0.69 -28.66 5.02 -448.98 -2.25 -30.91 16 13 C 0.54 22.58 7.74 86.79 0.67 23.25 16 14 O -0.60 -29.54 16.01 -3.88 -0.06 -29.61 16 15 C -0.14 -4.64 5.87 -20.09 -0.12 -4.76 16 16 C -0.08 -2.57 9.60 22.52 0.22 -2.35 16 17 C -0.11 -2.93 9.41 22.23 0.21 -2.72 16 18 C -0.08 -1.59 5.46 -19.80 -0.11 -1.70 16 19 C 0.15 2.10 5.33 85.63 0.46 2.56 16 20 N -0.59 -8.28 2.80 -830.99 -2.32 -10.60 16 21 C 0.10 0.68 6.38 86.49 0.55 1.23 16 22 C -0.13 -0.55 6.02 30.68 0.18 -0.37 16 23 C -0.12 -0.92 6.04 30.73 0.19 -0.74 16 24 C -0.13 -1.64 6.03 29.70 0.18 -1.46 16 25 C 0.51 9.71 7.46 87.71 0.65 10.36 16 26 O -0.60 -16.81 15.04 -3.04 -0.05 -16.86 16 27 C -0.10 -1.74 9.68 22.23 0.22 -1.52 16 28 C -0.09 -2.08 9.54 22.53 0.21 -1.86 16 29 H 0.04 1.98 3.27 -2.39 -0.01 1.97 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.41 14.41 6.57 -92.71 -0.61 13.81 16 34 H 0.11 3.98 7.65 -2.91 -0.02 3.96 16 35 H 0.13 3.51 7.16 -2.91 -0.02 3.49 16 36 H 0.13 0.86 7.80 -2.39 -0.02 0.84 16 37 H 0.08 1.48 7.14 -2.39 -0.02 1.46 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.10 0.19 7.92 -2.39 -0.02 0.17 16 40 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.08 0.26 8.13 -2.38 -0.02 0.24 16 42 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 43 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.14 3.02 6.41 -2.91 -0.02 3.00 16 Total: -1.00 -78.46 376.28 2.54 -75.93 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.30 Total: 21.62 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 4.95 Total: -1.23 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -4.28 Total: -96.70 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -0.11 Total: -46.46 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.85 kcal Total: -78.46 2.54 -75.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751393286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.694 kcal (2) G-P(sol) polarization free energy of solvation -78.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds