Wall clock time and date at job start Tue Mar 31 2020 15:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46714 * 2 1 4 4 C 1.50702 * 109.46793 * 240.00559 * 2 1 3 5 5 H 1.07998 * 120.00103 * 245.52273 * 4 2 1 6 6 C 1.37881 * 120.00328 * 65.52714 * 4 2 1 7 7 N 1.31518 * 119.99481 * 9.65766 * 6 4 2 8 8 Si 1.86799 * 120.00117 * 189.65347 * 6 4 2 9 9 H 1.48505 * 109.46966 * 84.99574 * 8 6 4 10 10 H 1.48498 * 109.47090 * 204.99260 * 8 6 4 11 11 H 1.48501 * 109.47098 * 324.99256 * 8 6 4 12 12 N 1.46895 * 109.47391 * 120.00283 * 2 1 3 13 13 C 1.46907 * 110.99669 * 58.95388 * 12 2 1 14 14 C 1.46892 * 111.00175 * 295.00320 * 12 2 1 15 15 N 1.46498 * 109.47231 * 205.00040 * 14 12 2 16 16 C 1.33873 * 122.76419 * 90.02102 * 15 14 12 17 17 O 1.21227 * 125.39956 * 0.02562 * 16 15 14 18 18 C 1.51322 * 109.20871 * 180.02562 * 16 15 14 19 19 C 1.54228 * 103.55084 * 0.02562 * 18 16 15 20 20 C 1.53001 * 110.60446 * 118.67383 * 19 18 16 21 21 C 1.50707 * 110.60481 * 241.48262 * 19 18 16 22 22 C 1.38231 * 120.00128 * 65.19553 * 21 19 18 23 23 C 1.38237 * 120.00047 * 179.74886 * 22 21 19 24 24 C 1.38236 * 119.99770 * 0.52273 * 23 22 21 25 25 C 1.38236 * 120.00189 * 359.75481 * 24 23 22 26 26 C 1.38236 * 119.99840 * 245.46713 * 21 19 18 27 27 C 1.33879 * 122.76231 * 269.73129 * 15 14 12 28 28 O 1.21236 * 125.39132 * 359.97438 * 27 15 14 29 29 H 1.08998 * 109.47306 * 60.83531 * 1 2 3 30 30 H 1.09003 * 109.47028 * 180.83412 * 1 2 3 31 31 H 1.09001 * 109.46836 * 300.83514 * 1 2 3 32 32 H 0.97005 * 119.99116 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.46930 * 60.00006 * 13 12 2 34 34 H 1.09000 * 109.46885 * 180.02562 * 13 12 2 35 35 H 1.09000 * 109.46981 * 300.00134 * 13 12 2 36 36 H 1.09006 * 109.47048 * 324.99481 * 14 12 2 37 37 H 1.09000 * 109.47722 * 84.99328 * 14 12 2 38 38 H 1.09000 * 110.60258 * 118.51641 * 18 16 15 39 39 H 1.08997 * 110.60459 * 241.48704 * 18 16 15 40 40 H 1.08996 * 109.47076 * 60.00076 * 20 19 18 41 41 H 1.09005 * 109.46897 * 179.97438 * 20 19 18 42 42 H 1.09000 * 109.47211 * 299.99289 * 20 19 18 43 43 H 1.07998 * 119.99964 * 359.97438 * 22 21 19 44 44 H 1.07993 * 119.99846 * 180.29652 * 23 22 21 45 45 H 1.08003 * 119.99683 * 179.77139 * 24 23 22 46 46 H 1.07992 * 120.00411 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.00068 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5776 -1.6375 -1.1341 6 6 1.7957 -0.1765 -2.4796 7 7 1.3035 1.0378 -2.5932 8 14 2.1744 -1.1778 -4.0104 9 1 1.0201 -2.0579 -4.3243 10 1 2.4232 -0.2616 -5.1522 11 1 3.3809 -2.0101 -3.7715 12 7 2.0198 -0.6925 1.1993 13 6 1.5284 -2.0762 1.2457 14 6 1.6488 0.0390 2.4180 15 7 2.5926 -0.2874 3.4898 16 6 3.7149 0.4102 3.7043 17 8 4.0794 1.3696 3.0592 18 6 4.4564 -0.1886 4.8796 19 6 3.5587 -1.3661 5.3113 20 6 4.3114 -2.6920 5.1835 21 6 3.0691 -1.1700 6.7231 22 6 2.2229 -0.1184 7.0213 23 6 1.7696 0.0584 8.3153 24 6 2.1713 -0.8100 9.3130 25 6 3.0221 -1.8582 9.0159 26 6 3.4707 -2.0384 7.7208 27 6 2.4010 -1.3045 4.3391 28 8 1.4520 -2.0590 4.3283 29 1 -0.3634 0.5008 -0.8974 30 1 -0.3633 -1.0276 0.0150 31 1 -0.3633 0.5268 0.8824 32 1 1.1367 1.4132 -3.4720 33 1 1.8763 -2.6150 0.3645 34 1 1.9054 -2.5657 2.1437 35 1 0.4385 -2.0743 1.2637 36 1 1.6786 1.1108 2.2216 37 1 0.6416 -0.2470 2.7211 38 1 5.4380 -0.5481 4.5710 39 1 4.5491 0.5392 5.6858 40 1 5.1960 -2.6705 5.8200 41 1 3.6612 -3.5102 5.4931 42 1 4.6133 -2.8399 4.1466 43 1 1.9130 0.5628 6.2428 44 1 1.1047 0.8771 8.5473 45 1 1.8201 -0.6697 10.3247 46 1 3.3355 -2.5369 9.7952 47 1 4.1357 -2.8571 7.4887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763326738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:58 Heat of formation + Delta-G solvation = -20.658364 kcal Electronic energy + Delta-G solvation = -29206.966594 eV Core-core repulsion = 25355.499009 eV Total energy + Delta-G solvation = -3851.467585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.16311 -39.44330 -38.34172 -37.20410 -35.89324 -34.55655 -32.52816 -31.31372 -30.34003 -28.99715 -28.29727 -26.65330 -25.21273 -25.01488 -23.63426 -22.92005 -22.52210 -20.80974 -19.75730 -18.97674 -17.67914 -17.03876 -16.40846 -16.22313 -16.02933 -15.31384 -15.08659 -14.99318 -14.81807 -14.42077 -14.17530 -13.87304 -13.81814 -13.67337 -13.58805 -13.23358 -13.07400 -12.69389 -12.53844 -12.43888 -12.12640 -11.86222 -11.69523 -11.30850 -11.22028 -11.19697 -11.11376 -10.89590 -10.86842 -10.60330 -10.46587 -10.16139 -9.95699 -9.80728 -9.54112 -9.18863 -9.00527 -8.96905 -8.36721 -7.39017 -6.05655 -4.05473 1.00634 1.13001 1.66146 2.65212 2.90601 3.31190 3.37472 3.40578 3.45074 4.01706 4.08455 4.24935 4.36235 4.40996 4.62151 4.72811 4.80387 4.85201 4.99142 5.16948 5.24648 5.28765 5.30630 5.32007 5.43648 5.45799 5.55061 5.67667 5.70823 5.74619 5.82416 5.86209 6.18022 6.19316 6.23870 6.26249 6.34784 6.54744 6.68399 6.69465 6.80041 6.95117 7.03387 7.31026 7.48560 7.51791 7.77185 7.96382 8.01441 8.24168 8.48908 8.97952 9.57583 11.04267 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.002971 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.675604 B = 9423.392972 C = 9488.454614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.216 3.784 3 H 0.051 0.949 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.542 5.542 13 C 0.034 3.966 14 C 0.263 3.737 15 N -0.560 5.560 16 C 0.530 3.470 17 O -0.469 6.469 18 C -0.149 4.149 19 C -0.057 4.057 20 C -0.135 4.135 21 C -0.064 4.064 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.106 4.106 27 C 0.540 3.460 28 O -0.473 6.473 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.011 0.989 32 H 0.261 0.739 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.024 0.976 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 -4.526 23.807 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.110 3.890 3 H 0.069 0.931 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.267 5.267 13 C -0.114 4.114 14 C 0.052 3.948 15 N -0.304 5.304 16 C 0.318 3.682 17 O -0.339 6.339 18 C -0.189 4.189 19 C -0.060 4.060 20 C -0.192 4.192 21 C -0.065 4.065 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.124 4.124 27 C 0.327 3.673 28 O -0.344 6.344 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.135 0.865 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.628 -4.260 23.215 24.052 hybrid contribution -0.858 -0.404 -0.970 1.356 sum 3.770 -4.664 22.245 23.039 Atomic orbital electron populations 1.22415 1.00877 0.99405 1.00064 1.19350 0.89367 0.95197 0.85112 0.93120 1.21013 1.35467 1.08207 0.89566 0.91879 1.24914 0.95385 0.94683 0.98985 1.69969 1.45210 1.13812 1.23881 0.86565 0.78678 0.80010 0.82490 1.20662 1.21317 1.19911 1.62036 1.60206 1.02585 1.01910 1.22325 0.97567 0.90336 1.01214 1.22172 0.88868 0.99678 0.84038 1.46982 1.23849 1.29576 1.29971 1.20600 0.80505 0.82430 0.84708 1.90799 1.67951 1.24821 1.50309 1.22743 1.00552 0.97604 0.97973 1.20368 0.94622 0.98533 0.92497 1.21822 1.00065 0.93714 1.03577 1.19241 0.98445 0.96211 0.92553 1.21023 0.97340 0.97523 0.97122 1.21113 0.99761 0.99555 0.92730 1.21198 0.97942 0.95280 0.99296 1.21155 0.97924 0.98065 0.96478 1.21115 1.00018 0.98849 0.92414 1.20388 0.86811 0.79180 0.80936 1.90740 1.31839 1.40855 1.70927 0.90786 0.94461 0.97036 0.92889 0.90674 0.93727 0.95786 0.88291 0.91800 0.85843 0.86351 0.90366 0.90679 0.91013 0.86475 0.85817 0.85998 0.85811 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.42 37.16 0.31 -3.66 16 2 C 0.22 5.44 2.14 -68.86 -0.15 5.30 16 3 H 0.05 1.43 7.87 -51.93 -0.41 1.02 16 4 C -0.50 -13.87 7.97 -34.44 -0.27 -14.14 16 5 H 0.06 1.74 6.56 -52.49 -0.34 1.40 16 6 C 0.06 1.73 5.19 -17.82 -0.09 1.64 16 7 N -0.89 -25.61 12.17 55.43 0.67 -24.94 16 8 Si 0.89 21.47 29.55 -169.99 -5.02 16.45 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.54 -11.96 4.84 -240.19 -1.16 -13.12 16 13 C 0.03 0.70 8.61 60.07 0.52 1.21 16 14 C 0.26 5.01 4.42 -63.33 -0.28 4.73 16 15 N -0.56 -9.12 2.77 -118.62 -0.33 -9.45 16 16 C 0.53 8.17 8.08 -11.08 -0.09 8.08 16 17 O -0.47 -9.00 17.48 5.60 0.10 -8.90 16 18 C -0.15 -1.53 6.16 -26.94 -0.17 -1.69 16 19 C -0.06 -0.61 0.91 -155.87 -0.14 -0.75 16 20 C -0.13 -1.17 7.11 37.16 0.26 -0.90 16 21 C -0.06 -0.65 4.71 -104.62 -0.49 -1.14 16 22 C -0.11 -1.16 8.84 -39.58 -0.35 -1.51 16 23 C -0.11 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.11 -0.89 9.05 -39.58 -0.36 -1.25 16 27 C 0.54 8.02 5.17 -11.09 -0.06 7.96 16 28 O -0.47 -8.26 15.98 5.60 0.09 -8.17 16 29 H 0.07 1.91 6.90 -51.93 -0.36 1.55 16 30 H 0.04 0.85 6.34 -51.93 -0.33 0.52 16 31 H 0.01 0.23 7.18 -51.93 -0.37 -0.14 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.07 1.62 6.43 -51.93 -0.33 1.29 16 34 H 0.04 0.86 5.81 -51.93 -0.30 0.56 16 35 H 0.02 0.49 6.25 -51.93 -0.32 0.17 16 36 H 0.10 1.94 7.41 -51.93 -0.38 1.56 16 37 H 0.06 1.20 7.26 -51.93 -0.38 0.82 16 38 H 0.12 1.03 7.74 -51.93 -0.40 0.63 16 39 H 0.12 1.00 7.57 -51.93 -0.39 0.61 16 40 H 0.08 0.46 7.39 -51.93 -0.38 0.08 16 41 H 0.07 0.67 7.80 -51.93 -0.41 0.26 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.12 1.27 7.75 -52.49 -0.41 0.86 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.13 0.84 6.06 -52.49 -0.32 0.52 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -32.52 373.98 -9.23 -41.75 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.67 Total: 0.92 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.55 Total: -0.17 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.82 Total: -47.51 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.19 Total: -17.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.52 -9.23 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763326738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.091 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds